Rmu_co8107158.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8107158.1
OG0012415
Physical Location & Seq
Forward (+)
1 .. 607
607 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8107158.1_g000001.1.cds

Sequence Viewer

Length: 607 bp
atgagcatgtgcctgttttgtcttctccgcgttctacacctggttgtgaggctctacccttgaaagatgaaagacaatacatttatgagtttgatgcagagaattctccgttttctctggcttcactgagtagtgggaatgtcattcttacacctcaatcagactcaagtgcagatagacatgctggcctgtcatggtctaatacagacaaccagaggaaacactatgattctgaactcagttcagtggctgaagctattcggatggcaagcttgtctccaaaccgtcatgaactgattgaggatcagattgattcaagtttccaatttgattgtctaactacaacttgtaattcgatcagtcgaatccagaaaatgttggatgatcaggctccctggcattccaactccactttagagaatgtgtcacaatcccagctgaggatatcatggagagaagggttaatgagccgtatgcatgacatggatgaatatgattgctgcagatgtttatcagacgaagaggaagatatcaatggctgcagcaatgaccttcccaaaaagtcctgtctaagtcctgaaatcaccaacaatgttgaggcagatca
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

22.6

Weight (kDa)

4.5

Isoelectric Point (pI)

70.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012415)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43990
fragaria_vesca FvH4_1g00220
malus_domestica MD00G1086900.v1.1 MD15G1142800.v1.1
prunus_persica Prupe.7G270200_v2.0.a1 Prupe.7G270200_v2.0.a1
pyrus_communis pycom15g12890 pycom290g00170
rosa_chinensis RchiOBHm_Chr2g0084511
rosa_laevigata RLG00000015623
rosa_multiflora Rmu_co8107158.1_g000001 Rmu_sc0009647.1_g000004
rosa_roxburghii Rroxscaffold_2G00156000
rosa_rugosa Rorug01G0454600
rosa_samantha Rh2AG002700 Rh2BG002300 Rh2CG002800 Rh2DG002800
rosa_wichuraiana Rw2G000240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 30
AciI CCGC 1 cut(s) 28
AclWI GGATC 1 cut(s) 311
AcsI RAATTY 1 cut(s) 102
AcuI CTGAAG 1 cut(s) 272
AfiI CCNNNNNNNGG 1 cut(s) 440
AgsI TTSAA 2 cut(s) 63, 317
AjnI CCWGG 2 cut(s) 39, 394
AluBI AGCT 3 cut(s) 256, 272, 438
AluI AGCT 3 cut(s) 256, 272, 438
Alw26I GTCTC 1 cut(s) 281
AlwI GGATC 1 cut(s) 311
AlwNI CAGNNNCTG 1 cut(s) 250
AoxI GGCC 1 cut(s) 186
ApeKI GCWGC 3 cut(s) 500, 539, 542
ApoI RAATTY 1 cut(s) 102
Asp700I GAANNNNTTC 1 cut(s) 257
AsuHPI GGTGA 1 cut(s) 576
BbsI GAAGAC 1 cut(s) 14
BbvCI CCTCAGC 1 cut(s) 439
BbvI GCAGC 3 cut(s) 487, 526, 554
BccI CCATC 1 cut(s) 258
BceAI ACGGC 1 cut(s) 455
BciT130I CCWGG 2 cut(s) 41, 396
BclI TGATCA 1 cut(s) 384
BcoDI GTCTC 1 cut(s) 281
BfmI CTRYAG 2 cut(s) 501, 540
BisI GCNGC 3 cut(s) 501, 540, 543
BlsI GCNGC 3 cut(s) 502, 541, 544
Bme1390I CCNGG 2 cut(s) 41, 396
BmiI GGNNCC 1 cut(s) 392
BmrFI CCNGG 2 cut(s) 41, 396
BmsI GCATC 1 cut(s) 84
BpiI GAAGAC 1 cut(s) 14
Bpu10I CCTNAGC 1 cut(s) 439
BpuEI CTTGAG 1 cut(s) 150
BsaBI GATNNNNATC 1 cut(s) 510
BsaJI CCNNGG 1 cut(s) 394
Bsc4I CCNNNNNNNGG 1 cut(s) 440
Bse3DI GCAATG 1 cut(s) 552
Bse8I GATNNNNATC 1 cut(s) 510
BseBI CCWGG 2 cut(s) 41, 396
BseDI CCNNGG 1 cut(s) 394
BseGI GGATG 3 cut(s) 269, 387, 492
BseJI GATNNNNATC 1 cut(s) 510
BseLI CCNNNNNNNGG 1 cut(s) 440
BseMI GCAATG 1 cut(s) 552
BseMII CTCAG 3 cut(s) 118, 252, 430
BseXI GCAGC 3 cut(s) 487, 526, 554
BseYI CCCAGC 1 cut(s) 434
BsgI GTGCAG 1 cut(s) 191
Bsh1236I CGCG 1 cut(s) 30
BshFI GGCC 1 cut(s) 188
BslI CCNNNNNNNGG 1 cut(s) 440
BsmAI GTCTC 1 cut(s) 281
BsmI GAATGC 1 cut(s) 399
BsnI GGCC 1 cut(s) 188
Bsp143I GATC 4 cut(s) 303, 356, 384, 603
BspACI CCGC 1 cut(s) 28
BspANI GGCC 1 cut(s) 188
BspCNI CTCAG 3 cut(s) 119, 251, 431
BspFNI CGCG 1 cut(s) 30
BspHI TCATGA 1 cut(s) 288
BspLI GGNNCC 1 cut(s) 392
BspMAI CTGCAG 2 cut(s) 505, 544
BspPI GGATC 1 cut(s) 311
BsrDI GCAATG 1 cut(s) 552
BssECI CCNNGG 1 cut(s) 394
BssMI GATC 4 cut(s) 303, 356, 384, 603
Bst2UI CCWGG 2 cut(s) 41, 396
Bst4CI ACNGT 1 cut(s) 286
Bst6I CTCTTC 1 cut(s) 515
BstC8I GCNNGC 2 cut(s) 186, 270
BstDEI CTNAG 4 cut(s) 127, 238, 439, 571
BstF5I GGATG 3 cut(s) 269, 387, 492
BstFNI CGCG 1 cut(s) 30
BstKTI GATC 4 cut(s) 306, 359, 387, 606
BstMAI GTCTC 1 cut(s) 281
BstMBI GATC 4 cut(s) 303, 356, 384, 603
BstNI CCWGG 2 cut(s) 41, 396
BstNSI RCATGY 2 cut(s) 10, 184
BstSCI CCNGG 2 cut(s) 39, 394
BstSFI CTRYAG 2 cut(s) 501, 540
BstUI CGCG 1 cut(s) 30
BstV1I GCAGC 3 cut(s) 487, 526, 554
BstV2I GAAGAC 1 cut(s) 14
BsuRI GGCC 1 cut(s) 188
BtsCI GGATG 3 cut(s) 269, 387, 492
BtsIMutI CAGTG 2 cut(s) 124, 251
Cac8I GCNNGC 2 cut(s) 186, 270
CaiI CAGNNNCTG 1 cut(s) 250
CciI TCATGA 1 cut(s) 288
CsiI ACCWGGT 1 cut(s) 39
CviAII CATG 7 cut(s) 7, 181, 194, 289, 449, 478, 483
DdeI CTNAG 4 cut(s) 127, 238, 439, 571
DpnI GATC 4 cut(s) 305, 358, 386, 605
DpnII GATC 4 cut(s) 303, 356, 384, 603
Eam1104I CTCTTC 1 cut(s) 515
EarI CTCTTC 1 cut(s) 515
Eco32I GATATC 2 cut(s) 446, 531
Eco57I CTGAAG 1 cut(s) 272
EcoRI GAATTC 1 cut(s) 102
EcoRII CCWGG 2 cut(s) 39, 394
EcoRV GATATC 2 cut(s) 446, 531
EcoT22I ATGCAT 1 cut(s) 479
FaeI CATG 7 cut(s) 10, 184, 197, 292, 452, 481, 486
FatI CATG 7 cut(s) 6, 180, 193, 288, 448, 477, 482
FbaI TGATCA 1 cut(s) 384
Fnu4HI GCNGC 3 cut(s) 501, 540, 543
FokI GGATG 3 cut(s) 276, 394, 499
Fsp4HI GCNGC 3 cut(s) 501, 540, 543
GluI GCNGC 3 cut(s) 501, 540, 543
GsaI CCCAGC 1 cut(s) 438
HaeIII GGCC 1 cut(s) 188
Hin1II CATG 7 cut(s) 10, 184, 197, 292, 452, 481, 486
HindIII AAGCTT 1 cut(s) 270
HinfI GANTC 4 cut(s) 163, 229, 313, 365
HphI GGTGA 1 cut(s) 576
Hpy188I TCNGA 5 cut(s) 162, 234, 263, 308, 516
Hpy188III TCNNGA 3 cut(s) 289, 369, 577
HpyAV CCTTC 2 cut(s) 451, 562
HpyCH4III ACNGT 1 cut(s) 286
HpyCH4V TGCA 5 cut(s) 97, 172, 477, 503, 542
HpyF3I CTNAG 4 cut(s) 127, 238, 439, 571
Hsp92II CATG 7 cut(s) 10, 184, 197, 292, 452, 481, 486
Ksp22I TGATCA 1 cut(s) 384
Kzo9I GATC 4 cut(s) 303, 356, 384, 603
LmnI GCTCC 1 cut(s) 396
Lsp1109I GCAGC 3 cut(s) 487, 526, 554
LweI GCATC 1 cut(s) 84
MabI ACCWGGT 1 cut(s) 39
MaeIII GTNAC 1 cut(s) 425
MalI GATC 4 cut(s) 305, 358, 386, 605
MboI GATC 4 cut(s) 303, 356, 384, 603
MboII GAAGA 3 cut(s) 14, 532, 538
MluCI AATT 3 cut(s) 102, 325, 351
MlyI GAGTC 1 cut(s) 157
MmeI TCCRAC 2 cut(s) 359, 428
MnlI CCTC 7 cut(s) 42, 164, 209, 294, 434, 516, 591
Mph1103I ATGCAT 1 cut(s) 479
MroXI GAANNNNTTC 1 cut(s) 257
MseI TTAA 1 cut(s) 463
MspA1I CMGCKG 1 cut(s) 438
MspR9I CCNGG 2 cut(s) 41, 396
Mva1269I GAATGC 1 cut(s) 399
MvaI CCWGG 2 cut(s) 41, 396
MvnI CGCG 1 cut(s) 30
NdeII GATC 4 cut(s) 303, 356, 384, 603
NlaIII CATG 7 cut(s) 10, 184, 197, 292, 452, 481, 486
NlaIV GGNNCC 1 cut(s) 392
NmuCI GTSAC 1 cut(s) 425
NsiI ATGCAT 1 cut(s) 479
NspI RCATGY 2 cut(s) 10, 184
PagI TCATGA 1 cut(s) 288
PctI GAATGC 1 cut(s) 399
PdmI GAANNNNTTC 1 cut(s) 257
PfeI GAWTC 3 cut(s) 229, 313, 365
PkrI GCNGC 3 cut(s) 502, 541, 544
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
Psp6I CCWGG 2 cut(s) 39, 394
PspFI CCCAGC 1 cut(s) 434
PspGI CCWGG 2 cut(s) 39, 394
PspN4I GGNNCC 1 cut(s) 392
PstI CTGCAG 2 cut(s) 505, 544
PstNI CAGNNNCTG 1 cut(s) 250
PvuII CAGCTG 1 cut(s) 438
SaqAI TTAA 1 cut(s) 463
SatI GCNGC 3 cut(s) 501, 540, 543
Sau3AI GATC 4 cut(s) 303, 356, 384, 603
SchI GAGTC 1 cut(s) 157
ScrFI CCNGG 2 cut(s) 41, 396
SetI ASST 6 cut(s) 42, 156, 258, 274, 440, 554
SexAI ACCWGGT 1 cut(s) 39
SfaNI GCATC 1 cut(s) 84
SfcI CTRYAG 2 cut(s) 501, 540
SmlI CTYRAG 1 cut(s) 165
SmoI CTYRAG 1 cut(s) 165
Sse9I AATT 3 cut(s) 102, 325, 351
SsiI CCGC 1 cut(s) 28
StyD4I CCNGG 2 cut(s) 39, 394
TaaI ACNGT 1 cut(s) 286
TaqI TCGA 2 cut(s) 355, 363
TasI AATT 3 cut(s) 102, 325, 351
TfiI GAWTC 3 cut(s) 229, 313, 365
Tru1I TTAA 1 cut(s) 463
Tru9I TTAA 1 cut(s) 463
TscAI CASTG 2 cut(s) 131, 251
TseFI GTSAC 1 cut(s) 425
TseI GCWGC 3 cut(s) 500, 539, 542
Tsp45I GTSAC 1 cut(s) 425
TspDTI ATGAA 3 cut(s) 83, 305, 503
TspGWI ACGGA 1 cut(s) 98
TspRI CASTG 2 cut(s) 131, 251
XapI RAATTY 1 cut(s) 102
XceI RCATGY 2 cut(s) 10, 184
XmnI GAANNNNTTC 1 cut(s) 257
Zsp2I ATGCAT 1 cut(s) 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.