Rroxscaffold_2G00156000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0012415
Physical Location & Seq
Reverse (-)
92521678 .. 92524062
2385 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00156000.1

Sequence Viewer

Length: 1962 bp
ATGAACCGATCGTTGTCGTCAAAGGCGGCGAATAAGAAGAAGCCCTCTCCGGCGCCGGCGAATAAGAAGAAGAAGGAGCAGAGCCTTCGAAACCCGTTACAGGATCTCAATGTCATCAGCACCACTACTAGCACTAGCAACCATGGGAGCGAGGCTTCTTCTTCTTCTTCAATGTCCACGGAAGCCCCACGAGGTTGCCTCAGGTTCTTTCTCTCTCACTCCTCTTCCTCTAATTTAAGAACCCCTATACGCACACGCACCAGGCCTAAAACTCTCTCCAAAACCCCTAAATCAGCTCCTCTTGTGAGGCCTAAGGAGAACCCCTCCAAATGCAATGTTTCCAAACACAACCCACAGAAATCAAAATTCAAGACTAGTTCTTCTTGCTTGTATCACTGGCAGCCCGGGAACCTACCTAGTTGTAGGAATGGGCTCAAGTTGAAAGCTTGTCCAGCTTTGAACTCGAAAGGCAATTCCTTTGAACAAGGTGTTGTCAGGGTAGTTGATGATGTAGGTCAACCCAATGAGCTTAAATCAGGTTCTAGTGATGGAACTTTTACTCCCTTATGTAAGATACCTACCGGGTTGGGTTTGGACCGCAAAGTCGATAAGGCTGAGGATGTGCAACAGAATTCTAACGAGAGTAATAGTAATAGTAATAGTACAACTCCTCCTGTTCAGGCCTCTGTGTCTCCAGAGATACAATTTGGATCGTCTGCCGTGTCATCAGCCTCGCTGGCTTGTTATGCTGCAGGCCATGTTCTTTCGGGGATCGCTGACAAGAGGAAGTGCAGACCTAGGGGAATTCTCAATGTAGGCGAGAATGATTCAGGCTTTGGGAAAGGGAAGGCTTTATGCAGTTTTGAGGAAGTGGTGGAGGATGACCATGCAACTGGCAAAGCAATGGTTGGAGGTCCTGGTGCTTCTATGGTTCCCTTACCTACTGAAGCTTCAATGCATTGGATTTTATCACCATGTAATGAGGAAGATGAGGATCACAAGGAGCATTCTGAATCTAGTTTTCAGAATCCTGCAGGGTCCCCCAATAGTGGTCGTGAATTCTCTTCAGATGTATGCTGCGATAACAACTATGAAAGCACTACTTGCCGTAGCAGCAGGAATACTTCCATTTCTCCTAGTGGAGTTCCTAAGTTTCTAGAATTGTTGGAGCCCTTAAATGAGCATGTGCCTGTTTTGTCTTCTCCGCATTCTACACCTGGTTGTGAGGCTCTACCCTTGAAAGATGAAAGACAATACATTTATGAGTTTGATGCAGAGAATTCTCCGTTTTCTCTGGCTTCACTGAGTAGTGGGAATGTTATTCTTACACCTCAATCAGACTCAAGTGCAGATAGACATGCTGGCCTGTCATGGTCTAATACAGACAACCATAGGAAACACTATGATTCTGAACTCAATTCAGTGGCTGAAGCTATTCGGATGGCAAGCTTGTCTCCAAACTGTCATGAACTGATTGAGGATCAGATTGATTCAAGTTTCCAATTTGATTGTCTAACTACAACTTGTAATTCGATCAGTCAAATCCAGAAAATGTTGGATGATCAGGCTCCCTGGCATTCCAACTCCACTTTAGAGAATGTGTCACAATCCCAGCTGAGGATATCATGGAGAGAAGGGTTAATGAGCCGTATGCATGACATGGATGAATATGATTGCTGCAGATGTTTATCAGACGAAGAGGAAGATATCAATGGCTGCAGCAATGACCTTCCCAAAAAGTCCTGTCTAAGTCCTGAAATCACCAACAATGTTGAGGCAGACCAGATTTTAACTGATACTTCCTGGTCTGCTGATATACTGGATGATGAACCAGGAGTTGCGGGAAAAGTTAAAGAAGACTTTCCTCCTCAATCATGTGCCGAGTCCATAAGCACTGATGGAGGCGGCCTGCTTGCTTCAGGGGATTCAGACTGGAGTCTCTGCTACAAGAATGAGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

653

Amino Acids

70.73

Weight (kDa)

5.38

Isoelectric Point (pI)

59.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012415)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43990
fragaria_vesca FvH4_1g00220
malus_domestica MD00G1086900.v1.1 MD15G1142800.v1.1
prunus_persica Prupe.7G270200_v2.0.a1 Prupe.7G270200_v2.0.a1
pyrus_communis pycom15g12890 pycom290g00170
rosa_chinensis RchiOBHm_Chr2g0084511
rosa_laevigata RLG00000015623
rosa_multiflora Rmu_co8107158.1_g000001 Rmu_sc0009647.1_g000004
rosa_roxburghii Rroxscaffold_2G00156000
rosa_rugosa Rorug01G0454600
rosa_samantha Rh2AG002700 Rh2BG002300 Rh2CG002800 Rh2DG002800
rosa_wichuraiana Rw2G000240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 602
AccB1I GGYRCC 1 cut(s) 52
AciI CCGC 5 cut(s) 26, 598, 1205, 1841, 1905
AclWI GGATC 5 cut(s) 111, 718, 779, 1002, 1488
AcsI RAATTY 5 cut(s) 365, 631, 804, 1058, 1279
AcuI CTGAAG 4 cut(s) 966, 1050, 1449, 1902
AcyI GRCGYC 1 cut(s) 53
AfaI GTAC 1 cut(s) 664
AfiI CCNNNNNNNGG 3 cut(s) 100, 1049, 1617
AgsI TTSAA 8 cut(s) 171, 370, 442, 460, 482, 954, 1240, 1494
AhlI ACTAGT 1 cut(s) 374
AjnI CCWGG 6 cut(s) 260, 916, 1216, 1571, 1802, 1831
AloI GAACNNNNNNTCC 2 cut(s) 544, 576
AluBI AGCT 9 cut(s) 296, 446, 455, 529, 950, 1433, 1449, 1615, 1957
AluI AGCT 9 cut(s) 296, 446, 455, 529, 950, 1433, 1449, 1615, 1957
Alw26I GTCTC 3 cut(s) 696, 1458, 1943
AlwI GGATC 5 cut(s) 111, 718, 779, 1002, 1488
AlwNI CAGNNNCTG 1 cut(s) 1427
Ama87I CYCGRG 1 cut(s) 404
AoxI GGCC 6 cut(s) 263, 308, 681, 754, 1363, 1906
ApeKI GCWGC 7 cut(s) 400, 749, 1077, 1113, 1677, 1716, 1719
ApoI RAATTY 5 cut(s) 365, 631, 804, 1058, 1279
Asp700I GAANNNNTTC 2 cut(s) 1434, 1860
AspA2I CCTAGG 1 cut(s) 797
AspLEI GCGC 1 cut(s) 55
AspS9I GGNCC 3 cut(s) 595, 914, 1038
AsuC2I CCSGG 3 cut(s) 405, 406, 583
AsuHPI GGTGA 2 cut(s) 963, 1753
AsuII TTCGAA 1 cut(s) 88
AvaI CYCGRG 1 cut(s) 404
AvaII GGWCC 3 cut(s) 595, 914, 1038
AvrII CCTAGG 1 cut(s) 797
AxyI CCTNAGG 2 cut(s) 200, 312
BanI GGYRCC 1 cut(s) 52
BanII GRGCYC 2 cut(s) 435, 1173
BauI CACGAG 1 cut(s) 189
BbsI GAAGAC 2 cut(s) 1191, 1863
BbvCI CCTCAGC 2 cut(s) 615, 1616
BbvI GCAGC 7 cut(s) 412, 736, 1064, 1125, 1664, 1703, 1731
BccI CCATC 3 cut(s) 542, 1435, 1892
BceAI ACGGC 3 cut(s) 704, 1092, 1632
BcgI CGANNNNNNTGC 2 cut(s) 68, 102
BciT130I CCWGG 6 cut(s) 262, 918, 1218, 1573, 1804, 1833
BclI TGATCA 1 cut(s) 1561
BcnI CCSGG 3 cut(s) 405, 406, 583
BcoDI GTCTC 3 cut(s) 696, 1458, 1943
BcuI ACTAGT 1 cut(s) 374
BfaI CTAG 9 cut(s) 129, 135, 375, 417, 543, 798, 1017, 1137, 1157
BfmI CTRYAG 4 cut(s) 750, 1032, 1678, 1717
BfoI RGCGCY 1 cut(s) 56
BglI GCCNNNNNGGC 1 cut(s) 737
BisI GCNGC 9 cut(s) 27, 401, 750, 1078, 1114, 1678, 1717, 1720, 1906
BlnI CCTAGG 1 cut(s) 797
BlsI GCNGC 9 cut(s) 28, 402, 751, 1079, 1115, 1679, 1718, 1721, 1907
Bme1390I CCNGG 9 cut(s) 262, 405, 406, 583, 918, 1218, 1573, 1804, 1833
Bme18I GGWCC 3 cut(s) 595, 914, 1038
BmeT110I CYCGRG 1 cut(s) 404
BmgT120I GGNCC 3 cut(s) 595, 914, 1038
BmiI GGNNCC 7 cut(s) 54, 410, 933, 1039, 1040, 1170, 1569
BmrFI CCNGG 9 cut(s) 262, 405, 406, 583, 918, 1218, 1573, 1804, 1833
BmsI GCATC 1 cut(s) 1261
BoxI GACNNNNGTC 1 cut(s) 1935
BpiI GAAGAC 2 cut(s) 1191, 1863
BplI GAGNNNNNCTC 4 cut(s) 183, 215, 308, 340
BpmI CTGGAG 2 cut(s) 678, 1954
Bpu10I CCTNAGC 2 cut(s) 615, 1616
Bpu14I TTCGAA 1 cut(s) 88
BpuEI CTTGAG 2 cut(s) 419, 1327
BpuMI CCSGG 3 cut(s) 405, 406, 583
BsaBI GATNNNNATC 2 cut(s) 993, 1687
BsaHI GRCGYC 1 cut(s) 53
BsaJI CCNNGG 5 cut(s) 142, 177, 404, 797, 1571
BsaXI ACNNNNNCTCC 4 cut(s) 544, 574, 655, 685
Bsc4I CCNNNNNNNGG 3 cut(s) 100, 1049, 1617
Bse118I RCCGGY 1 cut(s) 55
Bse1I ACTGG 4 cut(s) 401, 898, 1824, 1937
Bse21I CCTNAGG 2 cut(s) 200, 312
Bse3DI GCAATG 3 cut(s) 340, 909, 1729
Bse8I GATNNNNATC 2 cut(s) 993, 1687
BseBI CCWGG 6 cut(s) 262, 918, 1218, 1573, 1804, 1833
BseDI CCNNGG 5 cut(s) 142, 177, 404, 797, 1571
BseGI GGATG 6 cut(s) 625, 886, 1446, 1564, 1669, 1828
BseJI GATNNNNATC 2 cut(s) 993, 1687
BseLI CCNNNNNNNGG 3 cut(s) 100, 1049, 1617
BseMI GCAATG 3 cut(s) 340, 909, 1729
BseMII CTCAG 4 cut(s) 214, 606, 1295, 1607
BseNI ACTGG 4 cut(s) 401, 898, 1824, 1937
BseRI GAGGAG 4 cut(s) 211, 288, 660, 1857
BseXI GCAGC 7 cut(s) 412, 736, 1064, 1125, 1664, 1703, 1731
BseYI CCCAGC 1 cut(s) 1611
BsgI GTGCAG 2 cut(s) 811, 1368
Bsh1285I CGRYCG 1 cut(s) 11
BshFI GGCC 6 cut(s) 265, 310, 683, 756, 1365, 1908
BshNI GGYRCC 1 cut(s) 52
BsiEI CGRYCG 1 cut(s) 11
BsiHKCI CYCGRG 1 cut(s) 404
BsiSI CCGG 4 cut(s) 50, 56, 405, 582
BslFI GGGAC 1 cut(s) 1024
BslI CCNNNNNNNGG 3 cut(s) 100, 1049, 1617
BsmAI GTCTC 3 cut(s) 696, 1458, 1943
BsmFI GGGAC 1 cut(s) 1024
BsmI GAATGC 3 cut(s) 1006, 1207, 1576
BsnI GGCC 6 cut(s) 265, 310, 683, 756, 1365, 1908
BsoBI CYCGRG 1 cut(s) 404
Bsp119I TTCGAA 1 cut(s) 88
Bsp1286I GDGCHC 2 cut(s) 435, 1173
Bsp143I GATC 8 cut(s) 8, 103, 710, 771, 994, 1480, 1533, 1561
Bsp19I CCATGG 1 cut(s) 142
BspACI CCGC 5 cut(s) 26, 598, 1205, 1841, 1905
BspANI GGCC 6 cut(s) 265, 310, 683, 756, 1365, 1908
BspCNI CTCAG 4 cut(s) 213, 607, 1296, 1608
BspHI TCATGA 1 cut(s) 1465
BspLI GGNNCC 7 cut(s) 54, 410, 933, 1039, 1040, 1170, 1569
BspMAI CTGCAG 4 cut(s) 754, 1036, 1682, 1721
BspPI GGATC 5 cut(s) 111, 718, 779, 1002, 1488
BspT104I TTCGAA 1 cut(s) 88
BspT107I GGYRCC 1 cut(s) 52
BsrDI GCAATG 3 cut(s) 340, 909, 1729
BsrFI RCCGGY 1 cut(s) 55
BsrI ACTGG 4 cut(s) 401, 898, 1824, 1937
BssAI RCCGGY 1 cut(s) 55
BssECI CCNNGG 5 cut(s) 142, 177, 404, 797, 1571
BssMI GATC 8 cut(s) 8, 103, 710, 771, 994, 1480, 1533, 1561
BssNI GRCGYC 1 cut(s) 53
BssSI CACGAG 1 cut(s) 189
BssT1I CCWWGG 2 cut(s) 142, 797
Bst2BI CACGAG 1 cut(s) 189
Bst2UI CCWGG 6 cut(s) 262, 918, 1218, 1573, 1804, 1833
Bst4CI ACNGT 1 cut(s) 1463
Bst6I CTCTTC 3 cut(s) 229, 1069, 1692
BstACI GRCGYC 1 cut(s) 53
BstAPI GCANNNNNTGC 1 cut(s) 1104
BstBI TTCGAA 1 cut(s) 88
BstC8I GCNNGC 7 cut(s) 57, 738, 754, 1363, 1447, 1910, 1914
BstDEI CTNAG 7 cut(s) 200, 312, 615, 1149, 1304, 1616, 1748
BstDSI CCRYGG 2 cut(s) 142, 177
BstF5I GGATG 6 cut(s) 625, 886, 1446, 1564, 1669, 1828
BstH2I RGCGCY 1 cut(s) 56
BstHHI GCGC 1 cut(s) 55
BstKTI GATC 8 cut(s) 11, 106, 713, 774, 997, 1483, 1536, 1564
BstMAI GTCTC 3 cut(s) 696, 1458, 1943
BstMBI GATC 8 cut(s) 8, 103, 710, 771, 994, 1480, 1533, 1561
BstMCI CGRYCG 1 cut(s) 11
BstMWI GCNNNNNNNGC 5 cut(s) 452, 737, 746, 1104, 1113
BstNI CCWGG 6 cut(s) 262, 918, 1218, 1573, 1804, 1833
BstNSI RCATGY 2 cut(s) 1187, 1361
BstPAI GACNNNNGTC 1 cut(s) 1935
BstSCI CCNGG 9 cut(s) 260, 403, 404, 581, 916, 1216, 1571, 1802, 1831
BstSFI CTRYAG 4 cut(s) 750, 1032, 1678, 1717
BstV1I GCAGC 7 cut(s) 412, 736, 1064, 1125, 1664, 1703, 1731
BstV2I GAAGAC 2 cut(s) 1191, 1863
BstX2I RGATCY 1 cut(s) 103
BstXI CCANNNNNNTGG 1 cut(s) 893
BstYI RGATCY 1 cut(s) 103
Bsu36I CCTNAGG 2 cut(s) 200, 312
BsuRI GGCC 6 cut(s) 265, 310, 683, 756, 1365, 1908
BtgI CCRYGG 2 cut(s) 142, 177
BtsCI GGATG 6 cut(s) 625, 886, 1446, 1564, 1669, 1828
BtsIMutI CAGTG 4 cut(s) 394, 1301, 1428, 1893
Cac8I GCNNGC 7 cut(s) 57, 738, 754, 1363, 1447, 1910, 1914
CaiI CAGNNNCTG 1 cut(s) 1427
CciI TCATGA 1 cut(s) 1465
CfoI GCGC 1 cut(s) 55
Cfr10I RCCGGY 1 cut(s) 55
Cfr13I GGNCC 3 cut(s) 595, 914, 1038
Cfr9I CCCGGG 1 cut(s) 404
CsiI ACCWGGT 1 cut(s) 1216
Csp6I GTAC 1 cut(s) 663
CviQI GTAC 1 cut(s) 663
DdeI CTNAG 7 cut(s) 200, 312, 615, 1149, 1304, 1616, 1748
DinI GGCGCC 1 cut(s) 54
DpnI GATC 8 cut(s) 10, 105, 712, 773, 996, 1482, 1535, 1563
DpnII GATC 8 cut(s) 8, 103, 710, 771, 994, 1480, 1533, 1561
DrdI GACNNNNNNGTC 1 cut(s) 602
DseDI GACNNNNNNGTC 1 cut(s) 602
Eam1104I CTCTTC 3 cut(s) 229, 1069, 1692
EarI CTCTTC 3 cut(s) 229, 1069, 1692
Eco130I CCWWGG 2 cut(s) 142, 797
Eco147I AGGCCT 3 cut(s) 265, 310, 683
Eco24I GRGCYC 2 cut(s) 435, 1173
Eco32I GATATC 2 cut(s) 1623, 1708
Eco47I GGWCC 3 cut(s) 595, 914, 1038
Eco57I CTGAAG 4 cut(s) 966, 1050, 1449, 1902
Eco81I CCTNAGG 2 cut(s) 200, 312
Eco88I CYCGRG 1 cut(s) 404
EcoO109I RGGNCCY 2 cut(s) 914, 1038
EcoRI GAATTC 4 cut(s) 631, 804, 1058, 1279
EcoRII CCWGG 6 cut(s) 260, 916, 1216, 1571, 1802, 1831
EcoRV GATATC 2 cut(s) 1623, 1708
EcoT14I CCWWGG 2 cut(s) 142, 797
EcoT22I ATGCAT 2 cut(s) 960, 1656
EcoT38I GRGCYC 2 cut(s) 435, 1173
EgeI GGCGCC 1 cut(s) 54
EheI GGCGCC 1 cut(s) 54
ErhI CCWWGG 2 cut(s) 142, 797
FalI AAGNNNNNCTT 2 cut(s) 1087, 1119
FaqI GGGAC 1 cut(s) 1024
FauI CCCGC 1 cut(s) 1834
FbaI TGATCA 1 cut(s) 1561
Fnu4HI GCNGC 9 cut(s) 27, 401, 750, 1078, 1114, 1678, 1717, 1720, 1906
FokI GGATG 6 cut(s) 632, 893, 1453, 1571, 1676, 1835
FriOI GRGCYC 2 cut(s) 435, 1173
Fsp4HI GCNGC 9 cut(s) 27, 401, 750, 1078, 1114, 1678, 1717, 1720, 1906
FspBI CTAG 9 cut(s) 129, 135, 375, 417, 543, 798, 1017, 1137, 1157
GlaI GCGC 1 cut(s) 54
GluI GCNGC 9 cut(s) 27, 401, 750, 1078, 1114, 1678, 1717, 1720, 1906
GsaI CCCAGC 1 cut(s) 1615
GsuI CTGGAG 2 cut(s) 678, 1954
HaeII RGCGCY 1 cut(s) 56
HaeIII GGCC 6 cut(s) 265, 310, 683, 756, 1365, 1908
HapII CCGG 4 cut(s) 50, 56, 405, 582
HhaI GCGC 1 cut(s) 55
Hin1I GRCGYC 1 cut(s) 53
Hin6I GCGC 1 cut(s) 53
HinP1I GCGC 1 cut(s) 53
HincII GTYRAC 1 cut(s) 518
HindII GTYRAC 1 cut(s) 518
HindIII AAGCTT 3 cut(s) 444, 948, 1447
HinfI GANTC 9 cut(s) 827, 1013, 1027, 1340, 1406, 1490, 1883, 1925, 1936
HpaII CCGG 4 cut(s) 50, 56, 405, 582
HphI GGTGA 2 cut(s) 963, 1753
Hpy166II GTNNAC 2 cut(s) 177, 518
Hpy188I TCNGA 9 cut(s) 1012, 1026, 1069, 1339, 1411, 1440, 1485, 1693, 1930
Hpy188III TCNNGA 7 cut(s) 370, 695, 1055, 1157, 1466, 1546, 1754
Hpy8I GTNNAC 2 cut(s) 177, 518
HpyAV CCTTC 5 cut(s) 67, 95, 841, 1628, 1739
HpyCH4III ACNGT 1 cut(s) 1463
HpyF10VI GCNNNNNNNGC 5 cut(s) 452, 737, 746, 1104, 1113
HpyF3I CTNAG 7 cut(s) 200, 312, 615, 1149, 1304, 1616, 1748
Hsp92I GRCGYC 1 cut(s) 53
HspAI GCGC 1 cut(s) 53
KasI GGCGCC 1 cut(s) 52
KflI GGGWCCC 1 cut(s) 1038
KroI GCCGGC 1 cut(s) 55
KroNI GCCGGC 1 cut(s) 57
Ksp22I TGATCA 1 cut(s) 1561
Kzo9I GATC 8 cut(s) 8, 103, 710, 771, 994, 1480, 1533, 1561
LmnI GCTCC 6 cut(s) 76, 147, 301, 1003, 1168, 1573
Lsp1109I GCAGC 7 cut(s) 412, 736, 1064, 1125, 1664, 1703, 1731
LweI GCATC 1 cut(s) 1261
MabI ACCWGGT 1 cut(s) 1216
MaeI CTAG 9 cut(s) 129, 135, 375, 417, 543, 798, 1017, 1137, 1157
MaeIII GTNAC 2 cut(s) 96, 1602
MalI GATC 8 cut(s) 10, 105, 712, 773, 996, 1482, 1535, 1563
MboI GATC 8 cut(s) 8, 103, 710, 771, 994, 1480, 1533, 1561
MflI RGATCY 1 cut(s) 103
MhlI GDGCHC 2 cut(s) 435, 1173
Mly113I GGCGCC 1 cut(s) 53
MlyI GAGTC 3 cut(s) 1334, 1892, 1945
MmeI TCCRAC 4 cut(s) 889, 1146, 1536, 1605
Mph1103I ATGCAT 2 cut(s) 960, 1656
MreI CGCCGGCG 1 cut(s) 55
MroNI GCCGGC 1 cut(s) 55
MroXI GAANNNNTTC 2 cut(s) 1434, 1860
MseI TTAA 7 cut(s) 236, 531, 1175, 1640, 1790, 1851, 1960
MspA1I CMGCKG 1 cut(s) 1615
MspI CCGG 4 cut(s) 50, 56, 405, 582
MspR9I CCNGG 9 cut(s) 262, 405, 406, 583, 918, 1218, 1573, 1804, 1833
Mva1269I GAATGC 3 cut(s) 1006, 1207, 1576
MvaI CCWGG 6 cut(s) 262, 918, 1218, 1573, 1804, 1833
MwoI GCNNNNNNNGC 5 cut(s) 452, 737, 746, 1104, 1113
NaeI GCCGGC 1 cut(s) 57
NarI GGCGCC 1 cut(s) 53
NciI CCSGG 3 cut(s) 405, 406, 583
NcoI CCATGG 1 cut(s) 142
NdeII GATC 8 cut(s) 8, 103, 710, 771, 994, 1480, 1533, 1561
NgoMIV GCCGGC 1 cut(s) 55
NlaIV GGNNCC 7 cut(s) 54, 410, 933, 1039, 1040, 1170, 1569
NmeAIII GCCGAG 1 cut(s) 1906
NmuCI GTSAC 1 cut(s) 1602
NsiI ATGCAT 2 cut(s) 960, 1656
NspI RCATGY 2 cut(s) 1187, 1361
NspV TTCGAA 1 cut(s) 88
PagI TCATGA 1 cut(s) 1465
PceI AGGCCT 3 cut(s) 265, 310, 683
PctI GAATGC 3 cut(s) 1006, 1207, 1576
PdiI GCCGGC 1 cut(s) 57
PdmI GAANNNNTTC 2 cut(s) 1434, 1860
PfeI GAWTC 6 cut(s) 827, 1013, 1027, 1406, 1490, 1925
PkrI GCNGC 9 cut(s) 28, 402, 751, 1079, 1115, 1679, 1718, 1721, 1907
Ple19I CGATCG 1 cut(s) 11
PleI GAGTC 3 cut(s) 1334, 1891, 1944
PluTI GGCGCC 1 cut(s) 56
PpsI GAGTC 3 cut(s) 1334, 1891, 1944
PpuMI RGGWCCY 2 cut(s) 914, 1038
PshAI GACNNNNGTC 1 cut(s) 1935
Psp5II RGGWCCY 2 cut(s) 914, 1038
Psp6I CCWGG 6 cut(s) 260, 916, 1216, 1571, 1802, 1831
PspFI CCCAGC 1 cut(s) 1611
PspGI CCWGG 6 cut(s) 260, 916, 1216, 1571, 1802, 1831
PspN4I GGNNCC 7 cut(s) 54, 410, 933, 1039, 1040, 1170, 1569
PspPI GGNCC 3 cut(s) 595, 914, 1038
PspPPI RGGWCCY 2 cut(s) 914, 1038
PstI CTGCAG 4 cut(s) 754, 1036, 1682, 1721
PstNI CAGNNNCTG 1 cut(s) 1427
PsuI RGATCY 1 cut(s) 103
PvuI CGATCG 1 cut(s) 11
PvuII CAGCTG 1 cut(s) 1615
RsaI GTAC 1 cut(s) 664
RsaNI GTAC 1 cut(s) 663
SaqAI TTAA 7 cut(s) 236, 531, 1175, 1640, 1790, 1851, 1960
SatI GCNGC 9 cut(s) 27, 401, 750, 1078, 1114, 1678, 1717, 1720, 1906
Sau3AI GATC 8 cut(s) 8, 103, 710, 771, 994, 1480, 1533, 1561
Sau96I GGNCC 3 cut(s) 595, 914, 1038
SbfI CCTGCAGG 1 cut(s) 1036
SchI GAGTC 3 cut(s) 1334, 1892, 1945
ScrFI CCNGG 9 cut(s) 262, 405, 406, 583, 918, 1218, 1573, 1804, 1833
SdaI CCTGCAGG 1 cut(s) 1036
SduI GDGCHC 2 cut(s) 435, 1173
SexAI ACCWGGT 1 cut(s) 1216
SfaNI GCATC 1 cut(s) 1261
SfcI CTRYAG 4 cut(s) 750, 1032, 1678, 1717
SfoI GGCGCC 1 cut(s) 54
SfuI TTCGAA 1 cut(s) 88
SgrAI CRCCGGYG 1 cut(s) 55
SinI GGWCC 3 cut(s) 595, 914, 1038
SmaI CCCGGG 1 cut(s) 406
SmlI CTYRAG 2 cut(s) 434, 1342
SmoI CTYRAG 2 cut(s) 434, 1342
SpeI ACTAGT 1 cut(s) 374
Sse8387I CCTGCAGG 1 cut(s) 1036
SseBI AGGCCT 3 cut(s) 265, 310, 683
SsiI CCGC 5 cut(s) 26, 598, 1205, 1841, 1905
SspDI GGCGCC 1 cut(s) 52
SspMI CTAG 9 cut(s) 129, 135, 375, 417, 543, 798, 1017, 1137, 1157
StuI AGGCCT 3 cut(s) 265, 310, 683
StyD4I CCNGG 9 cut(s) 260, 403, 404, 581, 916, 1216, 1571, 1802, 1831
StyI CCWWGG 2 cut(s) 142, 797
TaaI ACNGT 1 cut(s) 1463
TaqI TCGA 4 cut(s) 88, 464, 606, 1532
TatI WGTACW 1 cut(s) 662
TauI GCSGC 2 cut(s) 29, 1908
TfiI GAWTC 6 cut(s) 827, 1013, 1027, 1406, 1490, 1925
Tru1I TTAA 7 cut(s) 236, 531, 1175, 1640, 1790, 1851, 1960
Tru9I TTAA 7 cut(s) 236, 531, 1175, 1640, 1790, 1851, 1960
TscAI CASTG 4 cut(s) 401, 1308, 1428, 1900
TseFI GTSAC 1 cut(s) 1602
TseI GCWGC 7 cut(s) 400, 749, 1077, 1113, 1677, 1716, 1719
Tsp45I GTSAC 1 cut(s) 1602
TspDTI ATGAA 6 cut(s) 17, 1107, 1260, 1482, 1680, 1842
TspGWI ACGGA 2 cut(s) 194, 1275
TspMI CCCGGG 1 cut(s) 404
TspRI CASTG 4 cut(s) 401, 1308, 1428, 1900
VpaK11BI GGWCC 3 cut(s) 595, 914, 1038
XapI RAATTY 5 cut(s) 365, 631, 804, 1058, 1279
XbaI TCTAGA 1 cut(s) 1156
XceI RCATGY 2 cut(s) 1187, 1361
XmaI CCCGGG 1 cut(s) 404
XmaJI CCTAGG 1 cut(s) 797
XmnI GAANNNNTTC 2 cut(s) 1434, 1860
XspI CTAG 9 cut(s) 129, 135, 375, 417, 543, 798, 1017, 1137, 1157
Zsp2I ATGCAT 2 cut(s) 960, 1656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.