Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8255623.1

Orthogroup ID

OG0011973

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 785

Gene Structure 785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8255623.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 326 bp

aggactacacggaagagcaagccgtggctcacattcgaagactggttgacatcgtcgcctgcacgacgtcgtttggctcgtcgtctacttcacccagaacccccggttctgcttcggttccggctccggttcggtcgagttctaaagagtccggtttagacgagggcgacgagcacaatgcggttccgaagaccaaagtttcgagtccgattccgatcgccggcgagaaaggcggcgagtcggcaatgtatcctccgccgaggctcggccagttttacgacttcttctccttgtctcaccttactcctccactccactgtaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0033993 GO:0042221 GO:0050896 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLU CLU_N TPR_12 eIF3_p135

Protein Analysis

107

Amino Acids

11.37

Weight (kDa)

6.06

Isoelectric Point (pI)

73.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28080
fragaria_vesca	FvH4_3g24640 FvH4_3g24640 FvH4_3g24640
malus_domestica	MD16G1258600.v1.1
prunus_persica	Prupe.1G101800_v2.0.a1
pyrus_communis	pycom16g22600
rosa_chinensis	RchiOBHm_Chr4g0405441
rosa_laevigata	RLG00000008842
rosa_multiflora	Rmu_co8255623.1_g000001 Rmu_sc0000575.1_g000017 Rmu_sc0000575.1_g000018
rosa_roxburghii	Rroxscaffold_5G00349900
rosa_rugosa	Rorug04G0060200
rosa_samantha	Rh4AG131900 Rh4BG126800 Rh4CG139300 Rh4DG125900
rosa_wichuraiana	Rw4G010680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	70
AccI	GTMKAC	1 cut(s)	85
AciI	CCGC	3 cut(s)	181, 233, 256
AcoI	YGGCCR	1 cut(s)	267
AcyI	GRCGYC	1 cut(s)	67
AfiI	CCNNNNNNNGG	2 cut(s)	220, 265
Alw21I	GWGCWC	1 cut(s)	176
Alw26I	GTCTC	1 cut(s)	299
AoxI	GGCC	1 cut(s)	267
ArsI	GACNNNNNNTTYG	2 cut(s)	183, 215
AsuC2I	CCSGG	1 cut(s)	104
AsuHPI	GGTGA	2 cut(s)	83, 289
AsuII	TTCGAA	1 cut(s)	36
BbsI	GAAGAC	2 cut(s)	45, 196
Bbv12I	GWGCWC	1 cut(s)	176
BceAI	ACGGC	1 cut(s)	7
BcgI	CGANNNNNNTGC	2 cut(s)	160, 194
BciVI	GTATCC	1 cut(s)	260
BcnI	CCSGG	1 cut(s)	104
BcoDI	GTCTC	1 cut(s)	299
BfuI	GTATCC	1 cut(s)	260
BisI	GCNGC	1 cut(s)	234
BlsI	GCNGC	1 cut(s)	235
Bme1390I	CCNGG	1 cut(s)	104
BmiI	GGNNCC	3 cut(s)	119, 125, 185
BmrFI	CCNGG	1 cut(s)	104
BpiI	GAAGAC	2 cut(s)	45, 196
Bpu14I	TTCGAA	1 cut(s)	36
BpuMI	CCSGG	1 cut(s)	104
BsaBI	GATNNNNATC	1 cut(s)	214
BsaHI	GRCGYC	1 cut(s)	67
BsaJI	CCNNGG	3 cut(s)	23, 102, 259
BsaWI	WCCGGW	2 cut(s)	126, 151
BsaXI	ACNNNNNCTCC	2 cut(s)	271, 301
Bsc4I	CCNNNNNNNGG	2 cut(s)	220, 265
Bse118I	RCCGGY	1 cut(s)	220
Bse1I	ACTGG	2 cut(s)	47, 270
Bse3DI	GCAATG	1 cut(s)	251
Bse8I	GATNNNNATC	1 cut(s)	214
BseDI	CCNNGG	3 cut(s)	23, 102, 259
BseJI	GATNNNNATC	1 cut(s)	214
BseLI	CCNNNNNNNGG	2 cut(s)	220, 265
BseMI	GCAATG	1 cut(s)	251
BseNI	ACTGG	2 cut(s)	47, 270
BseRI	GAGGAG	1 cut(s)	296
BsgI	GTGCAG	1 cut(s)	45
Bsh1285I	CGRYCG	2 cut(s)	136, 218
BshFI	GGCC	1 cut(s)	269
BsiEI	CGRYCG	2 cut(s)	136, 218
BsiHKAI	GWGCWC	1 cut(s)	176
BsiSI	CCGG	5 cut(s)	104, 121, 127, 152, 221
BslI	CCNNNNNNNGG	2 cut(s)	220, 265
BsmAI	GTCTC	1 cut(s)	299
BsnI	GGCC	1 cut(s)	269
Bsp119I	TTCGAA	1 cut(s)	36
Bsp1286I	GDGCHC	1 cut(s)	176
Bsp143I	GATC	1 cut(s)	215
BspACI	CCGC	3 cut(s)	181, 233, 256
BspANI	GGCC	1 cut(s)	269
BspLI	GGNNCC	3 cut(s)	119, 125, 185
BspQI	GCTCTTC	1 cut(s)	8
BspT104I	TTCGAA	1 cut(s)	36
BsrDI	GCAATG	1 cut(s)	251
BsrFI	RCCGGY	1 cut(s)	220
BsrI	ACTGG	2 cut(s)	47, 270
BssAI	RCCGGY	1 cut(s)	220
BssECI	CCNNGG	3 cut(s)	23, 102, 259
BssMI	GATC	1 cut(s)	215
BssNI	GRCGYC	1 cut(s)	67
Bst4CI	ACNGT	1 cut(s)	319
Bst6I	CTCTTC	1 cut(s)	8
BstACI	GRCGYC	1 cut(s)	67
BstBI	TTCGAA	1 cut(s)	36
BstC8I	GCNNGC	3 cut(s)	20, 60, 222
BstDSI	CCRYGG	1 cut(s)	23
BstKTI	GATC	1 cut(s)	218
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	1 cut(s)	215
BstMCI	CGRYCG	2 cut(s)	136, 218
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstSCI	CCNGG	1 cut(s)	102
BstV2I	GAAGAC	2 cut(s)	45, 196
BsuI	GTATCC	1 cut(s)	260
BsuRI	GGCC	1 cut(s)	269
BtgI	CCRYGG	1 cut(s)	23
BtsIMutI	CAGTG	1 cut(s)	315
Cac8I	GCNNGC	3 cut(s)	20, 60, 222
Cfr10I	RCCGGY	1 cut(s)	220
CviJI	RGCY	6 cut(s)	22, 28, 77, 124, 264, 269
CviKI_1	RGCY	6 cut(s)	22, 28, 77, 124, 264, 269
DpnI	GATC	1 cut(s)	217
DpnII	GATC	1 cut(s)	215
EaeI	YGGCCR	1 cut(s)	267
Eam1104I	CTCTTC	1 cut(s)	8
EarI	CTCTTC	1 cut(s)	8
EciI	GGCGGA	1 cut(s)	245
FblI	GTMKAC	1 cut(s)	85
Fnu4HI	GCNGC	1 cut(s)	234
Fsp4HI	GCNGC	1 cut(s)	234
GluI	GCNGC	1 cut(s)	234
HaeIII	GGCC	1 cut(s)	269
HapII	CCGG	5 cut(s)	104, 121, 127, 152, 221
Hin1I	GRCGYC	1 cut(s)	67
HincII	GTYRAC	1 cut(s)	48
HindII	GTYRAC	1 cut(s)	48
HinfI	GANTC	4 cut(s)	148, 204, 210, 238
HpaII	CCGG	5 cut(s)	104, 121, 127, 152, 221
HphI	GGTGA	2 cut(s)	83, 289
Hpy166II	GTNNAC	2 cut(s)	48, 86
Hpy188I	TCNGA	3 cut(s)	188, 209, 215
Hpy8I	GTNNAC	2 cut(s)	48, 86
Hpy99I	CGWCG	5 cut(s)	58, 69, 72, 84, 172
HpyCH4III	ACNGT	1 cut(s)	319
HpyCH4IV	ACGT	1 cut(s)	67
HpyCH4V	TGCA	1 cut(s)	62
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpySE526I	ACGT	1 cut(s)	67
Hsp92I	GRCGYC	1 cut(s)	67
KroI	GCCGGC	1 cut(s)	220
KroNI	GCCGGC	1 cut(s)	222
Kzo9I	GATC	1 cut(s)	215
LguI	GCTCTTC	1 cut(s)	8
LmnI	GCTCC	1 cut(s)	129
LpnPI	CCDG	9 cut(s)	28, 72, 108, 117, 134, 140, 165, 234, 283
MaeII	ACGT	1 cut(s)	67
MalI	GATC	1 cut(s)	217
MboI	GATC	1 cut(s)	215
MboII	GAAGA	4 cut(s)	25, 50, 201, 276
MhlI	GDGCHC	1 cut(s)	176
MlyI	GAGTC	3 cut(s)	157, 213, 247
MnlI	CCTC	4 cut(s)	156, 254, 263, 317
MreI	CGCCGGCG	1 cut(s)	220
MroNI	GCCGGC	1 cut(s)	220
MspI	CCGG	5 cut(s)	104, 121, 127, 152, 221
MspR9I	CCNGG	1 cut(s)	104
MwoI	GCNNNNNNNGC	1 cut(s)	230
NaeI	GCCGGC	1 cut(s)	222
NciI	CCSGG	1 cut(s)	104
NdeII	GATC	1 cut(s)	215
NgoMIV	GCCGGC	1 cut(s)	220
NlaIV	GGNNCC	3 cut(s)	119, 125, 185
NmeAIII	GCCGAG	2 cut(s)	245, 284
NspV	TTCGAA	1 cut(s)	36
PciSI	GCTCTTC	1 cut(s)	8
PcsI	WCGNNNNNNNCGW	2 cut(s)	76, 167
PdiI	GCCGGC	1 cut(s)	222
PfeI	GAWTC	1 cut(s)	210
PflFI	GACNNNGTC	1 cut(s)	52
PkrI	GCNGC	1 cut(s)	235
Ple19I	CGATCG	1 cut(s)	218
PleI	GAGTC	3 cut(s)	156, 212, 246
PpsI	GAGTC	3 cut(s)	156, 212, 246
PspN4I	GGNNCC	3 cut(s)	119, 125, 185
PsyI	GACNNNGTC	1 cut(s)	52
PvuI	CGATCG	1 cut(s)	218
SapI	GCTCTTC	1 cut(s)	8
SatI	GCNGC	1 cut(s)	234
Sau3AI	GATC	1 cut(s)	215
SchI	GAGTC	3 cut(s)	157, 213, 247
ScrFI	CCNGG	1 cut(s)	104
SduI	GDGCHC	1 cut(s)	176
SetI	ASST	2 cut(s)	70, 302
SfuI	TTCGAA	1 cut(s)	36
SgrAI	CRCCGGYG	1 cut(s)	220
SsiI	CCGC	3 cut(s)	181, 233, 256
StyD4I	CCNGG	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	319
TaiI	ACGT	1 cut(s)	70
TaqI	TCGA	3 cut(s)	36, 136, 202
TaqII	GACCGA	1 cut(s)	122
TauI	GCSGC	1 cut(s)	236
TfiI	GAWTC	1 cut(s)	210
TscAI	CASTG	1 cut(s)	322
TspGWI	ACGGA	1 cut(s)	25
TspRI	CASTG	1 cut(s)	322
Tth111I	GACNNNGTC	1 cut(s)	52
XmiI	GTMKAC	1 cut(s)	85
ZraI	GACGTC	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.