Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8256761.1

Orthogroup ID

OG0004541

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 714

Gene Structure 714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8256761.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 244 bp

atgccgatccattccagtcagggaaaaggtagaagggagaatttgctacttgcatacaagacactgggagtagtgtttggaggacttgttacatccccactgtatgtgtacccttccatgccactcaagtctccgaccgaagatgactatttgggcatttacagcattatgttttggactcttaccctcattggggttgtcaaatatgctggcattgctctcaaagccgatgatcaaggcgaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015318 GO:0015672 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0071804 GO:0071805 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K_trans

Protein Analysis

81

Amino Acids

8.9

Weight (kDa)

6.55

Isoelectric Point (pI)

45.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004541)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35910 FvH4_4g35910 FvH4_4g35910 FvH4_4g35910 FvH4_6g30570 FvH4_6g30570
malus_domestica	MD13G1014000.v1.1
prunus_persica	Prupe.1G339400_v2.0.a1 Prupe.1G339400_v2.0.a1
pyrus_communis	pycom13g01190
rosa_chinensis	RchiOBHm_Chr2g0136991 RchiOBHm_Chr4g0445501
rosa_laevigata	RLG00000005736
rosa_multiflora	Rmu_co8256761.1_g000001 Rmu_co8447799.1_g000001 Rmu_sc0001374.1_g000059 Rmu_sc0001509.1_g000011 Rmu_sc0003556.1_g000028 Rmu_sc0010466.1_g000002
rosa_roxburghii	Rroxscaffold_2G00107790 Rroxscaffold_5G00385980
rosa_rugosa	Rorug02G0336800 Rorug04G0361800
rosa_samantha	Rh2AG385900 Rh2BG392800 Rh2CG373300 Rh2DG409000 Rh4AG423200 Rh4BG435200 Rh4DG431500
rosa_wichuraiana	Rw2G031580 Rw4G036300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	40
AfaI	GTAC	1 cut(s)	110
AfiI	CCNNNNNNNGG	2 cut(s)	192, 193
Alw26I	GTCTC	1 cut(s)	135
ApoI	RAATTY	1 cut(s)	40
BclI	TGATCA	1 cut(s)	232
BcoDI	GTCTC	1 cut(s)	135
BmrI	ACTGGG	1 cut(s)	74
BmuI	ACTGGG	1 cut(s)	74
BpuEI	CTTGAG	1 cut(s)	110
BsaXI	ACNNNNNCTCC	2 cut(s)	72, 102
Bsc4I	CCNNNNNNNGG	2 cut(s)	192, 193
Bse1I	ACTGG	2 cut(s)	15, 69
Bse3DI	GCAATG	1 cut(s)	213
BseGI	GGATG	1 cut(s)	92
BseLI	CCNNNNNNNGG	2 cut(s)	192, 193
BseMI	GCAATG	1 cut(s)	213
BseNI	ACTGG	2 cut(s)	15, 69
Bsh1285I	CGRYCG	1 cut(s)	138
BsiEI	CGRYCG	1 cut(s)	138
BslI	CCNNNNNNNGG	2 cut(s)	192, 193
BsmAI	GTCTC	1 cut(s)	135
Bsp143I	GATC	2 cut(s)	6, 232
BsrDI	GCAATG	1 cut(s)	213
BsrI	ACTGG	2 cut(s)	15, 69
BssMI	GATC	2 cut(s)	6, 232
Bst4CI	ACNGT	1 cut(s)	102
BstC8I	GCNNGC	1 cut(s)	211
BstF5I	GGATG	1 cut(s)	92
BstKTI	GATC	2 cut(s)	9, 235
BstMAI	GTCTC	1 cut(s)	135
BstMBI	GATC	2 cut(s)	6, 232
BstMCI	CGRYCG	1 cut(s)	138
BstMWI	GCNNNNNNNGC	3 cut(s)	162, 215, 224
BtsCI	GGATG	1 cut(s)	92
BtsIMutI	CAGTG	2 cut(s)	62, 98
Cac8I	GCNNGC	1 cut(s)	211
Csp6I	GTAC	1 cut(s)	109
CviAII	CATG	1 cut(s)	118
CviJI	RGCY	1 cut(s)	227
CviKI_1	RGCY	1 cut(s)	227
CviQI	GTAC	1 cut(s)	109
DpnI	GATC	2 cut(s)	8, 234
DpnII	GATC	2 cut(s)	6, 232
FaeI	CATG	1 cut(s)	121
FaiI	YATR	5 cut(s)	55, 105, 119, 170, 207
FatI	CATG	1 cut(s)	117
FbaI	TGATCA	1 cut(s)	232
FokI	GGATG	1 cut(s)	79
Hin1II	CATG	1 cut(s)	121
HinfI	GANTC	1 cut(s)	178
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188I	TCNGA	1 cut(s)	135
Hpy8I	GTNNAC	1 cut(s)	109
HpyAV	CCTTC	2 cut(s)	27, 123
HpyCH4III	ACNGT	1 cut(s)	102
HpyCH4V	TGCA	1 cut(s)	53
HpyF10VI	GCNNNNNNNGC	3 cut(s)	162, 215, 224
Hsp92II	CATG	1 cut(s)	121
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	2 cut(s)	6, 232
LpnPI	CCDG	4 cut(s)	5, 28, 50, 195
MaeIII	GTNAC	1 cut(s)	88
MalI	GATC	2 cut(s)	8, 234
MboI	GATC	2 cut(s)	6, 232
MboII	GAAGA	1 cut(s)	152
MluCI	AATT	1 cut(s)	40
MlyI	GAGTC	1 cut(s)	172
MmeI	TCCRAC	1 cut(s)	158
MnlI	CCTC	2 cut(s)	74, 197
MwoI	GCNNNNNNNGC	3 cut(s)	162, 215, 224
NdeII	GATC	2 cut(s)	6, 232
NlaIII	CATG	1 cut(s)	121
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
RsaI	GTAC	1 cut(s)	110
RsaNI	GTAC	1 cut(s)	109
Sau3AI	GATC	2 cut(s)	6, 232
SchI	GAGTC	1 cut(s)	172
SetI	ASST	1 cut(s)	31
SgeI	CNNG	9 cut(s)	27, 32, 62, 70, 77, 98, 130, 139, 222
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	1 cut(s)	40
TaaI	ACNGT	1 cut(s)	102
TaqII	GACCGA	1 cut(s)	152
TasI	AATT	1 cut(s)	40
TscAI	CASTG	2 cut(s)	69, 105
TspRI	CASTG	2 cut(s)	69, 105
XapI	RAATTY	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.