Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004541

Physical Location & Seq

Genomic Coordinates Forward (+)

53447362 .. 53448089

Gene Structure 728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0361800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGAAGAGGCAGAGACGTGTAGATCATGGTGGTGGTGCTACCGCGGAAGCTCCAAAGCTTGACGCTGCAACAATGTCAATGCCGCGCAAGAAGCCCAAGATCAGAGCCGCTGCCAAGGTGAAAGAAGAGGCGGCCATCAAAGTGGAAAATGTGAGTCTTGATGGTGGAAACGATCAAATGGTGGCGGCTCAGGTTGCGATGGCGGCGGCGGAGGAGGAGAATTACTCGTGTAGTGATGGGTCAGTTTGGTTGGATGAGCAAATGTCATGGGGGTCAGTTTGGTCACCATTGTGGGATGTGGAGTTCATGGGTGAAGCACACTATGGATTGTTTAGTGATCATGTGGTTTGGGATGATGATATTTGGGGATTAAGGACCACCAGCAAGGAGATTCCAATTTCGAACCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015318 GO:0015672 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0071804 GO:0071805 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K_trans

Protein Analysis

136

Amino Acids

15.05

Weight (kDa)

5.04

Isoelectric Point (pI)

43.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004541)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35910 FvH4_4g35910 FvH4_4g35910 FvH4_4g35910 FvH4_6g30570 FvH4_6g30570
malus_domestica	MD13G1014000.v1.1
prunus_persica	Prupe.1G339400_v2.0.a1 Prupe.1G339400_v2.0.a1
pyrus_communis	pycom13g01190
rosa_chinensis	RchiOBHm_Chr2g0136991 RchiOBHm_Chr4g0445501
rosa_laevigata	RLG00000005736
rosa_multiflora	Rmu_co8256761.1_g000001 Rmu_co8447799.1_g000001 Rmu_sc0001374.1_g000059 Rmu_sc0001509.1_g000011 Rmu_sc0003556.1_g000028 Rmu_sc0010466.1_g000002
rosa_roxburghii	Rroxscaffold_2G00107790 Rroxscaffold_5G00385980
rosa_rugosa	Rorug02G0336800 Rorug04G0361800
rosa_samantha	Rh2AG385900 Rh2BG392800 Rh2CG373300 Rh2DG409000 Rh4AG423200 Rh4BG435200 Rh4DG431500
rosa_wichuraiana	Rw2G031580 Rw4G036300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	44, 85
AciI	CCGC	9 cut(s)	42, 44, 83, 108, 131, 185, 203, 206, 209
AcoI	YGGCCR	1 cut(s)	132
AflIII	ACRYGT	1 cut(s)	16
AjiI	CACGTC	1 cut(s)	17
AleI	CACNNNNGTG	1 cut(s)	289
AloI	GAACNNNNNNTCC	2 cut(s)	287, 319
AluBI	AGCT	2 cut(s)	50, 58
AluI	AGCT	2 cut(s)	50, 58
Alw26I	GTCTC	1 cut(s)	7
AoxI	GGCC	1 cut(s)	132
ApeKI	GCWGC	2 cut(s)	65, 110
AspLEI	GCGC	1 cut(s)	87
AspS9I	GGNCC	1 cut(s)	375
AsuHPI	GGTGA	3 cut(s)	130, 276, 323
AsuII	TTCGAA	1 cut(s)	401
AvaII	GGWCC	1 cut(s)	375
BauI	CACGAG	1 cut(s)	226
BbvI	GCAGC	2 cut(s)	52, 97
BccI	CCATC	4 cut(s)	143, 155, 193, 230
BclI	TGATCA	1 cut(s)	337
BcoDI	GTCTC	1 cut(s)	7
BisI	GCNGC	8 cut(s)	66, 83, 108, 111, 132, 186, 204, 207
BlsI	GCNGC	8 cut(s)	67, 84, 109, 112, 133, 187, 205, 208
Bme18I	GGWCC	1 cut(s)	375
BmgBI	CACGTC	1 cut(s)	17
BmgT120I	GGNCC	1 cut(s)	375
BplI	GAGNNNNNCTC	2 cut(s)	209, 241
Bpu10I	CCTNAGC	1 cut(s)	189
Bpu14I	TTCGAA	1 cut(s)	401
BsaJI	CCNNGG	2 cut(s)	42, 114
BseDI	CCNNGG	2 cut(s)	42, 114
BseGI	GGATG	3 cut(s)	259, 301, 358
BseMII	CTCAG	1 cut(s)	203
BseRI	GAGGAG	2 cut(s)	227, 230
BseXI	GCAGC	2 cut(s)	52, 97
Bsh1236I	CGCG	2 cut(s)	44, 85
BshFI	GGCC	1 cut(s)	134
BsmAI	GTCTC	1 cut(s)	7
BsmBI	CGTCTC	1 cut(s)	7
BsnI	GGCC	1 cut(s)	134
Bsp119I	TTCGAA	1 cut(s)	401
Bsp143I	GATC	4 cut(s)	22, 99, 172, 337
BspACI	CCGC	9 cut(s)	42, 44, 83, 108, 131, 185, 203, 206, 209
BspANI	GGCC	1 cut(s)	134
BspCNI	CTCAG	1 cut(s)	202
BspFNI	CGCG	2 cut(s)	44, 85
BspT104I	TTCGAA	1 cut(s)	401
BssECI	CCNNGG	2 cut(s)	42, 114
BssMI	GATC	4 cut(s)	22, 99, 172, 337
BssSI	CACGAG	1 cut(s)	226
BssT1I	CCWWGG	1 cut(s)	114
Bst2BI	CACGAG	1 cut(s)	226
Bst6I	CTCTTC	1 cut(s)	120
BstBI	TTCGAA	1 cut(s)	401
BstDEI	CTNAG	1 cut(s)	189
BstDSI	CCRYGG	1 cut(s)	42
BstEII	GGTNACC	1 cut(s)	282
BstF5I	GGATG	3 cut(s)	259, 301, 358
BstFNI	CGCG	2 cut(s)	44, 85
BstHHI	GCGC	1 cut(s)	87
BstKTI	GATC	4 cut(s)	25, 102, 175, 340
BstMAI	GTCTC	1 cut(s)	7
BstMBI	GATC	4 cut(s)	22, 99, 172, 337
BstMWI	GCNNNNNNNGC	3 cut(s)	91, 194, 203
BstPI	GGTNACC	1 cut(s)	282
BstUI	CGCG	2 cut(s)	44, 85
BstV1I	GCAGC	2 cut(s)	52, 97
BstXI	CCANNNNNNTGG	1 cut(s)	142
BsuRI	GGCC	1 cut(s)	134
BtgI	CCRYGG	1 cut(s)	42
BtgZI	GCGATG	1 cut(s)	212
BtrI	CACGTC	1 cut(s)	17
BtsCI	GGATG	3 cut(s)	259, 301, 358
CfoI	GCGC	1 cut(s)	87
Cfr13I	GGNCC	1 cut(s)	375
Cfr42I	CCGCGG	1 cut(s)	45
CseI	GACGC	1 cut(s)	71
CviAII	CATG	4 cut(s)	26, 267, 307, 341
CviJI	RGCY	6 cut(s)	50, 58, 94, 107, 134, 188
CviKI_1	RGCY	6 cut(s)	50, 58, 94, 107, 134, 188
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	4 cut(s)	24, 101, 174, 339
DpnII	GATC	4 cut(s)	22, 99, 172, 337
EaeI	YGGCCR	1 cut(s)	132
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
EciI	GGCGGA	1 cut(s)	224
Eco130I	CCWWGG	1 cut(s)	114
Eco47I	GGWCC	1 cut(s)	375
Eco91I	GGTNACC	1 cut(s)	282
EcoO65I	GGTNACC	1 cut(s)	282
EcoT14I	CCWWGG	1 cut(s)	114
ErhI	CCWWGG	1 cut(s)	114
Esp3I	CGTCTC	1 cut(s)	7
FaeI	CATG	4 cut(s)	29, 270, 310, 344
FaiI	YATR	5 cut(s)	27, 268, 308, 324, 342
FatI	CATG	4 cut(s)	25, 266, 306, 340
FbaI	TGATCA	1 cut(s)	337
Fnu4HI	GCNGC	8 cut(s)	66, 83, 108, 111, 132, 186, 204, 207
FokI	GGATG	3 cut(s)	266, 308, 365
Fsp4HI	GCNGC	8 cut(s)	66, 83, 108, 111, 132, 186, 204, 207
GlaI	GCGC	1 cut(s)	86
GluI	GCNGC	8 cut(s)	66, 83, 108, 111, 132, 186, 204, 207
HaeIII	GGCC	1 cut(s)	134
HgaI	GACGC	1 cut(s)	71
HhaI	GCGC	1 cut(s)	87
Hin1II	CATG	4 cut(s)	29, 270, 310, 344
Hin6I	GCGC	1 cut(s)	85
HinP1I	GCGC	1 cut(s)	85
HindIII	AAGCTT	1 cut(s)	56
HinfI	GANTC	2 cut(s)	154, 391
HphI	GGTGA	3 cut(s)	130, 276, 323
Hpy188I	TCNGA	1 cut(s)	104
Hpy188III	TCNNGA	1 cut(s)	158
HpyCH4IV	ACGT	1 cut(s)	16
HpyCH4V	TGCA	1 cut(s)	68
HpyF10VI	GCNNNNNNNGC	3 cut(s)	91, 194, 203
HpyF3I	CTNAG	1 cut(s)	189
HpySE526I	ACGT	1 cut(s)	16
Hsp92II	CATG	4 cut(s)	29, 270, 310, 344
HspAI	GCGC	1 cut(s)	85
Ksp22I	TGATCA	1 cut(s)	337
KspI	CCGCGG	1 cut(s)	45
Kzo9I	GATC	4 cut(s)	22, 99, 172, 337
LmnI	GCTCC	1 cut(s)	55
LpnPI	CCDG	2 cut(s)	176, 394
Lsp1109I	GCAGC	2 cut(s)	52, 97
MaeII	ACGT	1 cut(s)	16
MaeIII	GTNAC	1 cut(s)	282
MalI	GATC	4 cut(s)	24, 101, 174, 339
MboI	GATC	4 cut(s)	22, 99, 172, 337
MboII	GAAGA	2 cut(s)	16, 137
MluCI	AATT	2 cut(s)	220, 396
MlyI	GAGTC	1 cut(s)	163
MmeI	TCCRAC	1 cut(s)	231
MnlI	CCTC	3 cut(s)	121, 205, 208
MseI	TTAA	1 cut(s)	371
MslI	CAYNNNNRTG	3 cut(s)	30, 140, 289
MspA1I	CMGCKG	2 cut(s)	44, 110
MvnI	CGCG	2 cut(s)	44, 85
MwoI	GCNNNNNNNGC	3 cut(s)	91, 194, 203
NdeII	GATC	4 cut(s)	22, 99, 172, 337
NlaIII	CATG	4 cut(s)	29, 270, 310, 344
NmuCI	GTSAC	1 cut(s)	282
NspV	TTCGAA	1 cut(s)	401
OliI	CACNNNNGTG	1 cut(s)	289
PfeI	GAWTC	1 cut(s)	391
PkrI	GCNGC	8 cut(s)	67, 84, 109, 112, 133, 187, 205, 208
PleI	GAGTC	1 cut(s)	162
PpsI	GAGTC	1 cut(s)	162
PspEI	GGTNACC	1 cut(s)	282
PspPI	GGNCC	1 cut(s)	375
RseI	CAYNNNNRTG	3 cut(s)	30, 140, 289
SacII	CCGCGG	1 cut(s)	45
SaqAI	TTAA	1 cut(s)	371
SatI	GCNGC	8 cut(s)	66, 83, 108, 111, 132, 186, 204, 207
Sau3AI	GATC	4 cut(s)	22, 99, 172, 337
Sau96I	GGNCC	1 cut(s)	375
SchI	GAGTC	1 cut(s)	163
SetI	ASST	5 cut(s)	19, 52, 60, 120, 195
Sfr303I	CCGCGG	1 cut(s)	45
SfuI	TTCGAA	1 cut(s)	401
SgrBI	CCGCGG	1 cut(s)	45
SinI	GGWCC	1 cut(s)	375
SmiMI	CAYNNNNRTG	3 cut(s)	30, 140, 289
Sse9I	AATT	2 cut(s)	220, 396
SsiI	CCGC	9 cut(s)	42, 44, 83, 108, 131, 185, 203, 206, 209
StyI	CCWWGG	1 cut(s)	114
TaiI	ACGT	1 cut(s)	19
TaqI	TCGA	1 cut(s)	401
TasI	AATT	2 cut(s)	220, 396
TauI	GCSGC	6 cut(s)	85, 110, 134, 188, 206, 209
TfiI	GAWTC	1 cut(s)	391
Tru1I	TTAA	1 cut(s)	371
Tru9I	TTAA	1 cut(s)	371
TseFI	GTSAC	1 cut(s)	282
TseI	GCWGC	2 cut(s)	65, 110
Tsp45I	GTSAC	1 cut(s)	282
TspDTI	ATGAA	2 cut(s)	17, 295
VpaK11BI	GGWCC	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.