Rorug02G0336800

Potassium transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004541
Physical Location & Seq
Reverse (-)
41873059 .. 41873425
367 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0336800.1

Sequence Viewer

Length: 318 bp
ATGGTGAACGTTCCCAAGACTCAGAAGACCTACTGCAAGAACAAGGCGTGCAAGAAGCACACCTTGCACAAGGTTACACAGTACAAGAAGGGCAATGATAGTCTTGCTGCTCAGGGAAAGCGTCGTTATGATCGCAAGCAATCTGGTTATGGAGGTCAGACCAAGCCAGTCTTTCACAAGAAGGCCAAGACTACCAAGAAGATTGTTCTAAAGCTCCAATGCCAGGGATGCAAGCATGTTTCTCAGCATCCAATCAAGAGGTGCAAGCACTTTGAGATTGGTGGAGACAAGAAGGGAAAGGGAACATCGCTTTTATAA

Protein Analysis

105

Amino Acids

11.89

Weight (kDa)

10.27

Isoelectric Point (pI)

34.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L44 PF00935 19 - 94 6.1e-33 Ribosomal protein L44
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 316
AclI AACGTT 1 cut(s) 9
AfaI GTAC 1 cut(s) 83
AfiI CCNNNNNNNGG 1 cut(s) 223
AjnI CCWGG 1 cut(s) 222
AluBI AGCT 1 cut(s) 214
AluI AGCT 1 cut(s) 214
Alw26I GTCTC 1 cut(s) 279
AoxI GGCC 1 cut(s) 183
ApeKI GCWGC 1 cut(s) 107
AsuHPI GGTGA 1 cut(s) 16
BbsI GAAGAC 1 cut(s) 32
BbvI GCAGC 1 cut(s) 94
BciT130I CCWGG 1 cut(s) 224
BcoDI GTCTC 1 cut(s) 279
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
Bme1390I CCNGG 1 cut(s) 224
BmrFI CCNGG 1 cut(s) 224
BmsI GCATC 2 cut(s) 218, 256
BpiI GAAGAC 1 cut(s) 32
Bpu10I CCTNAGC 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 223
Bsc4I CCNNNNNNNGG 1 cut(s) 223
Bse1I ACTGG 1 cut(s) 167
Bse3DI GCAATG 1 cut(s) 100
BseBI CCWGG 1 cut(s) 224
BseDI CCNNGG 1 cut(s) 223
BseGI GGATG 2 cut(s) 233, 247
BseLI CCNNNNNNNGG 1 cut(s) 223
BseMI GCAATG 1 cut(s) 100
BseMII CTCAG 3 cut(s) 35, 125, 257
BseNI ACTGG 1 cut(s) 167
BseXI GCAGC 1 cut(s) 94
BshFI GGCC 1 cut(s) 185
BslI CCNNNNNNNGG 1 cut(s) 223
BsmAI GTCTC 1 cut(s) 279
BsnI GGCC 1 cut(s) 185
Bsp143I GATC 1 cut(s) 130
BspANI GGCC 1 cut(s) 185
BspCNI CTCAG 3 cut(s) 34, 124, 256
BsrDI GCAATG 1 cut(s) 100
BsrI ACTGG 1 cut(s) 167
BssECI CCNNGG 1 cut(s) 223
BssMI GATC 1 cut(s) 130
Bst2UI CCWGG 1 cut(s) 224
Bst4CI ACNGT 1 cut(s) 81
BstAPI GCANNNNNTGC 1 cut(s) 64
BstC8I GCNNGC 4 cut(s) 49, 137, 233, 266
BstDEI CTNAG 3 cut(s) 21, 111, 243
BstF5I GGATG 2 cut(s) 233, 247
BstKTI GATC 1 cut(s) 133
BstMAI GTCTC 1 cut(s) 279
BstMBI GATC 1 cut(s) 130
BstMWI GCNNNNNNNGC 2 cut(s) 64, 228
BstNI CCWGG 1 cut(s) 224
BstNSI RCATGY 1 cut(s) 239
BstSCI CCNGG 1 cut(s) 222
BstV1I GCAGC 1 cut(s) 94
BstV2I GAAGAC 1 cut(s) 32
BsuRI GGCC 1 cut(s) 185
BtgZI GCGATG 1 cut(s) 291
BtsCI GGATG 2 cut(s) 233, 247
Cac8I GCNNGC 4 cut(s) 49, 137, 233, 266
CseI GACGC 1 cut(s) 110
Csp6I GTAC 1 cut(s) 82
CviAII CATG 1 cut(s) 236
CviJI RGCY 3 cut(s) 166, 185, 214
CviKI_1 RGCY 3 cut(s) 166, 185, 214
CviQI GTAC 1 cut(s) 82
DdeI CTNAG 3 cut(s) 21, 111, 243
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
EcoRII CCWGG 1 cut(s) 222
FaeI CATG 1 cut(s) 239
FaiI YATR 4 cut(s) 129, 150, 237, 316
FalI AAGNNNNNCTT 4 cut(s) 47, 79, 155, 187
FatI CATG 1 cut(s) 235
Fnu4HI GCNGC 1 cut(s) 108
FokI GGATG 2 cut(s) 234, 240
Fsp4HI GCNGC 1 cut(s) 108
GluI GCNGC 1 cut(s) 108
HaeIII GGCC 1 cut(s) 185
HgaI GACGC 1 cut(s) 110
Hin1II CATG 1 cut(s) 239
HinfI GANTC 1 cut(s) 19
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 7
Hpy188I TCNGA 2 cut(s) 24, 159
Hpy188III TCNNGA 1 cut(s) 256
Hpy8I GTNNAC 1 cut(s) 7
Hpy99I CGWCG 1 cut(s) 126
HpyAV CCTTC 3 cut(s) 82, 175, 286
HpyCH4III ACNGT 1 cut(s) 81
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 5 cut(s) 36, 51, 67, 231, 264
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 228
HpyF3I CTNAG 3 cut(s) 21, 111, 243
HpySE526I ACGT 1 cut(s) 9
Hsp92II CATG 1 cut(s) 239
Kzo9I GATC 1 cut(s) 130
LmnI GCTCC 1 cut(s) 219
LpnPI CCDG 5 cut(s) 98, 129, 180, 209, 236
Lsp1109I GCAGC 1 cut(s) 94
LweI GCATC 2 cut(s) 218, 256
MaeII ACGT 1 cut(s) 9
MaeIII GTNAC 1 cut(s) 73
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MboII GAAGA 2 cut(s) 37, 211
MlyI GAGTC 1 cut(s) 13
MnlI CCTC 2 cut(s) 146, 252
MspR9I CCNGG 1 cut(s) 224
MvaI CCWGG 1 cut(s) 224
MwoI GCNNNNNNNGC 2 cut(s) 64, 228
NdeII GATC 1 cut(s) 130
NlaIII CATG 1 cut(s) 239
NspI RCATGY 1 cut(s) 239
PkrI GCNGC 1 cut(s) 109
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PsiI TTATAA 1 cut(s) 316
Psp1406I AACGTT 1 cut(s) 9
Psp6I CCWGG 1 cut(s) 222
PspGI CCWGG 1 cut(s) 222
RsaI GTAC 1 cut(s) 83
RsaNI GTAC 1 cut(s) 82
SatI GCNGC 1 cut(s) 108
Sau3AI GATC 1 cut(s) 130
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 1 cut(s) 224
SetI ASST 7 cut(s) 12, 32, 65, 75, 157, 216, 263
SfaNI GCATC 2 cut(s) 218, 256
StyD4I CCNGG 1 cut(s) 222
TaaI ACNGT 1 cut(s) 81
TaiI ACGT 1 cut(s) 12
TatI WGTACW 1 cut(s) 81
TseI GCWGC 1 cut(s) 107
XceI RCATGY 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.