Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8447799.1

Orthogroup ID

OG0004541

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1552

Gene Structure 1552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8447799.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

atgatcatgcagatactatttcatatagctttcttgtttaccatctatccttctctggttctgacatatgcggggcagacagcatacctgatcaagaatccaaatgatcataatgatggattctataagtttataccaactactatctactggcctatctttatcatatctacattagctgcaatagttgcaagccagtctctgatatcagccacgttttcggtaatcaagcaatctgtagtacttgattatttccctcgagtgaaggttgtgcacacatcccctagcaaagaaggcgaggtttactcccctgaagtcaattacattctcatggttctctgtgttgctgtcatacttatatttggggatggaaaagacataggaaatgcatttggtgttgttgtcagcttagtcatgctcatcaccacaatattactaacactggtaatggtcataatatggagaacaccaccggtgctggtggctctctacttctctatcttctttgtgatggaaggcgtttatgtgagtgcagtgttcaccaagatcactgaaggtggatggattccttttgccatatcttttatccttgccttcattatgttcggttggtaccatggaagacaaaggaagatagagtacgagttgactcacaaaataaccctagacaaacttggactgctattatctgatcccagtgttcaaagggttcctggattctgcttgttttactccaacattcaagacgggcttactccgattctcggacactatattaaaaacatgaaatcccttcaccaggtcaccatgttcactactcttcgatacttattggttcctaaggttgctcctcatgagaggattgttatcagcaaacttggcctgaaaggggtttatgggtgtgttattcagtatggctacgcagatcccctaaacctcgaaggagaagattttgtcagccaagttacaaatggtttgctggcacacatacaggacagctcgggctgtcggccatctgatcctgcagagatccaacaagagatgtctaatttggaagaagcaatgagtgctggaatagttcatattcgaggaaagacaaggttttatattggcaagagttgtggctggtttgataaaattatgctcgcattttatgaagttctgcacagtaactgtaggtctgctctgcctgctcttggggtgccactgcctcagcgtatcgag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015318 GO:0015672 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0071804 GO:0071805 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K_trans

Protein Analysis

408

Amino Acids

45.75

Weight (kDa)

7.65

Isoelectric Point (pI)

42.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004541)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35910 FvH4_4g35910 FvH4_4g35910 FvH4_4g35910 FvH4_6g30570 FvH4_6g30570
malus_domestica	MD13G1014000.v1.1
prunus_persica	Prupe.1G339400_v2.0.a1 Prupe.1G339400_v2.0.a1
pyrus_communis	pycom13g01190
rosa_chinensis	RchiOBHm_Chr2g0136991 RchiOBHm_Chr4g0445501
rosa_laevigata	RLG00000005736
rosa_multiflora	Rmu_co8256761.1_g000001 Rmu_co8447799.1_g000001 Rmu_sc0001374.1_g000059 Rmu_sc0001509.1_g000011 Rmu_sc0003556.1_g000028 Rmu_sc0010466.1_g000002
rosa_roxburghii	Rroxscaffold_2G00107790 Rroxscaffold_5G00385980
rosa_rugosa	Rorug02G0336800 Rorug04G0361800
rosa_samantha	Rh2AG385900 Rh2BG392800 Rh2CG373300 Rh2DG409000 Rh4AG423200 Rh4BG435200 Rh4DG431500
rosa_wichuraiana	Rw2G031580 Rw4G036300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	612
AccB1I	GGYRCC	2 cut(s)	612, 1201
AciI	CCGC	1 cut(s)	71
AclWI	GGATC	4 cut(s)	686, 920, 1013, 1024
AcoI	YGGCCR	1 cut(s)	1010
AcuI	CTGAAG	2 cut(s)	333, 573
AfaI	GTAC	3 cut(s)	243, 614, 641
AfiI	CCNNNNNNNGG	4 cut(s)	764, 799, 889, 1196
AgeI	ACCGGT	1 cut(s)	472
AgsI	TTSAA	2 cut(s)	704, 743
AjnI	CCWGG	2 cut(s)	712, 798
AluBI	AGCT	4 cut(s)	29, 179, 408, 999
AluI	AGCT	4 cut(s)	29, 179, 408, 999
Alw21I	GWGCWC	1 cut(s)	276
Alw26I	GTCTC	1 cut(s)	204
Alw44I	GTGCAC	1 cut(s)	272
AlwI	GGATC	4 cut(s)	686, 920, 1013, 1024
AlwNI	CAGNNNCTG	2 cut(s)	202, 1173
Ama87I	CYCGRG	2 cut(s)	258, 1000
AoxI	GGCC	3 cut(s)	152, 880, 1010
ApaLI	GTGCAC	1 cut(s)	272
ApeKI	GCWGC	1 cut(s)	179
AsiGI	ACCGGT	1 cut(s)	472
Asp718I	GGTACC	1 cut(s)	612
AsuHPI	GGTGA	4 cut(s)	415, 532, 788, 796
AvaI	CYCGRG	2 cut(s)	258, 1000
AxyI	CCTNAGG	1 cut(s)	840
BaeGI	GKGCMC	1 cut(s)	276
BanI	GGYRCC	2 cut(s)	612, 1201
BarI	GAAGNNNNNNTAC	2 cut(s)	623, 655
BbsI	GAAGAC	1 cut(s)	628
Bbv12I	GWGCWC	1 cut(s)	276
BbvCI	CCTCAGC	1 cut(s)	1212
BbvI	GCAGC	1 cut(s)	166
BccI	CCATC	6 cut(s)	50, 110, 362, 505, 555, 1021
BciT130I	CCWGG	2 cut(s)	714, 800
BclI	TGATCA	3 cut(s)	3, 90, 106
BcoDI	GTCTC	1 cut(s)	204
BfaI	CTAG	2 cut(s)	285, 665
BfmI	CTRYAG	3 cut(s)	237, 1023, 1174
BisI	GCNGC	1 cut(s)	180
BlsI	GCNGC	1 cut(s)	181
BmcAI	AGTACT	1 cut(s)	243
Bme1390I	CCNGG	2 cut(s)	714, 800
BmeT110I	CYCGRG	2 cut(s)	258, 1000
BmiI	GGNNCC	4 cut(s)	614, 711, 837, 1203
BmrFI	CCNGG	2 cut(s)	714, 800
BmrI	ACTGGG	1 cut(s)	690
BmuI	ACTGGG	1 cut(s)	690
BpiI	GAAGAC	1 cut(s)	628
BplI	GAGNNNNNCTC	2 cut(s)	290, 322
Bpu10I	CCTNAGC	1 cut(s)	1212
BsaBI	GATNNNNATC	1 cut(s)	866
BsaJI	CCNNGG	1 cut(s)	616
BsaWI	WCCGGW	1 cut(s)	472
Bsc4I	CCNNNNNNNGG	4 cut(s)	764, 799, 889, 1196
Bse118I	RCCGGY	1 cut(s)	472
Bse1I	ACTGG	4 cut(s)	155, 196, 447, 696
Bse21I	CCTNAGG	1 cut(s)	840
Bse3DI	GCAATG	1 cut(s)	1068
Bse8I	GATNNNNATC	1 cut(s)	866
BseBI	CCWGG	2 cut(s)	714, 800
BseDI	CCNNGG	1 cut(s)	616
BseGI	GGATG	3 cut(s)	278, 373, 566
BseJI	GATNNNNATC	1 cut(s)	866
BseLI	CCNNNNNNNGG	4 cut(s)	764, 799, 889, 1196
BseMI	GCAATG	1 cut(s)	1068
BseNI	ACTGG	4 cut(s)	155, 196, 447, 696
BseRI	GAGGAG	1 cut(s)	840
BseSI	GKGCMC	1 cut(s)	276
BseXI	GCAGC	1 cut(s)	166
BsgI	GTGCAG	2 cut(s)	552, 1148
BshFI	GGCC	3 cut(s)	154, 882, 1012
BshNI	GGYRCC	2 cut(s)	612, 1201
BshTI	ACCGGT	1 cut(s)	472
BsiHKAI	GWGCWC	1 cut(s)	276
BsiHKCI	CYCGRG	2 cut(s)	258, 1000
BsiSI	CCGG	1 cut(s)	473
BslI	CCNNNNNNNGG	4 cut(s)	764, 799, 889, 1196
BsmAI	GTCTC	1 cut(s)	204
BsnI	GGCC	3 cut(s)	154, 882, 1012
BsoBI	CYCGRG	2 cut(s)	258, 1000
Bsp1286I	GDGCHC	1 cut(s)	276
Bsp143I	GATC	8 cut(s)	3, 90, 106, 546, 691, 925, 1018, 1029
Bsp19I	CCATGG	1 cut(s)	616
BspACI	CCGC	1 cut(s)	71
BspANI	GGCC	3 cut(s)	154, 882, 1012
BspHI	TCATGA	1 cut(s)	853
BspLI	GGNNCC	4 cut(s)	614, 711, 837, 1203
BspMAI	CTGCAG	1 cut(s)	1027
BspPI	GGATC	4 cut(s)	686, 920, 1013, 1024
BspT107I	GGYRCC	2 cut(s)	612, 1201
BsrDI	GCAATG	1 cut(s)	1068
BsrFI	RCCGGY	1 cut(s)	472
BsrI	ACTGG	4 cut(s)	155, 196, 447, 696
BssAI	RCCGGY	1 cut(s)	472
BssECI	CCNNGG	1 cut(s)	616
BssMI	GATC	8 cut(s)	3, 90, 106, 546, 691, 925, 1018, 1029
BssT1I	CCWWGG	1 cut(s)	616
Bst2UI	CCWGG	2 cut(s)	714, 800
Bst4CI	ACNGT	2 cut(s)	1169, 1175
Bst6I	CTCTTC	1 cut(s)	825
BstAPI	GCANNNNNTGC	2 cut(s)	188, 1067
BstC8I	GCNNGC	4 cut(s)	193, 981, 1146, 1191
BstDEI	CTNAG	3 cut(s)	409, 840, 1212
BstDSI	CCRYGG	1 cut(s)	616
BstEII	GGTNACC	1 cut(s)	802
BstENI	CCTNNNNNAGG	1 cut(s)	797
BstF5I	GGATG	3 cut(s)	278, 373, 566
BstKTI	GATC	8 cut(s)	6, 93, 109, 549, 694, 928, 1021, 1032
BstMAI	GTCTC	1 cut(s)	204
BstMBI	GATC	8 cut(s)	3, 90, 106, 546, 691, 925, 1018, 1029
BstMWI	GCNNNNNNNGC	5 cut(s)	188, 294, 879, 1067, 1190
BstNI	CCWGG	2 cut(s)	714, 800
BstPI	GGTNACC	1 cut(s)	802
BstSCI	CCNGG	2 cut(s)	712, 798
BstSFI	CTRYAG	3 cut(s)	237, 1023, 1174
BstSLI	GKGCMC	1 cut(s)	276
BstV1I	GCAGC	1 cut(s)	166
BstV2I	GAAGAC	1 cut(s)	628
BstX2I	RGATCY	2 cut(s)	925, 1029
BstYI	RGATCY	2 cut(s)	925, 1029
Bsu36I	CCTNAGG	1 cut(s)	840
BsuRI	GGCC	3 cut(s)	154, 882, 1012
BtgI	CCRYGG	1 cut(s)	616
BtsCI	GGATG	3 cut(s)	278, 373, 566
BtsI	GCAGTG	2 cut(s)	540, 1205
BtsIMutI	CAGTG	5 cut(s)	440, 540, 549, 703, 1205
Cac8I	GCNNGC	4 cut(s)	193, 981, 1146, 1191
CaiI	CAGNNNCTG	2 cut(s)	202, 1173
CciI	TCATGA	1 cut(s)	853
Cfr10I	RCCGGY	1 cut(s)	472
CsiI	ACCWGGT	1 cut(s)	798
Csp6I	GTAC	3 cut(s)	242, 613, 640
CspAI	ACCGGT	1 cut(s)	472
CspCI	CAANNNNNGTGG	2 cut(s)	1102, 1137
CviAII	CATG	7 cut(s)	7, 331, 415, 617, 784, 808, 854
CviQI	GTAC	3 cut(s)	242, 613, 640
DdeI	CTNAG	3 cut(s)	409, 840, 1212
DpnI	GATC	8 cut(s)	5, 92, 108, 548, 693, 927, 1020, 1031
DpnII	GATC	8 cut(s)	3, 90, 106, 546, 691, 925, 1018, 1029
EaeI	YGGCCR	1 cut(s)	1010
Eam1104I	CTCTTC	1 cut(s)	825
EarI	CTCTTC	1 cut(s)	825
Eco130I	CCWWGG	1 cut(s)	616
Eco32I	GATATC	1 cut(s)	207
Eco57I	CTGAAG	2 cut(s)	333, 573
Eco81I	CCTNAGG	1 cut(s)	840
Eco88I	CYCGRG	2 cut(s)	258, 1000
Eco91I	GGTNACC	1 cut(s)	802
EcoNI	CCTNNNNNAGG	1 cut(s)	797
EcoO65I	GGTNACC	1 cut(s)	802
EcoRII	CCWGG	2 cut(s)	712, 798
EcoRV	GATATC	1 cut(s)	207
EcoT14I	CCWWGG	1 cut(s)	616
EcoT22I	ATGCAT	1 cut(s)	391
ErhI	CCWWGG	1 cut(s)	616
FaeI	CATG	7 cut(s)	10, 334, 418, 620, 787, 811, 857
FalI	AAGNNNNNCTT	2 cut(s)	735, 767
FatI	CATG	7 cut(s)	6, 330, 414, 616, 783, 807, 853
FauI	CCCGC	1 cut(s)	64
FauNDI	CATATG	1 cut(s)	67
FbaI	TGATCA	3 cut(s)	3, 90, 106
Fnu4HI	GCNGC	1 cut(s)	180
FokI	GGATG	3 cut(s)	265, 380, 573
Fsp4HI	GCNGC	1 cut(s)	180
FspBI	CTAG	2 cut(s)	285, 665
GluI	GCNGC	1 cut(s)	180
HaeIII	GGCC	3 cut(s)	154, 882, 1012
HapII	CCGG	1 cut(s)	473
Hin1II	CATG	7 cut(s)	10, 334, 418, 620, 787, 811, 857
HincII	GTYRAC	1 cut(s)	648
HindII	GTYRAC	1 cut(s)	648
HinfI	GANTC	6 cut(s)	97, 120, 565, 649, 717, 760
HpaII	CCGG	1 cut(s)	473
HphI	GGTGA	4 cut(s)	415, 532, 788, 796
Hpy166II	GTNNAC	6 cut(s)	39, 274, 304, 540, 648, 813
Hpy188I	TCNGA	6 cut(s)	63, 204, 691, 759, 767, 1018
Hpy188III	TCNNGA	3 cut(s)	94, 743, 854
Hpy8I	GTNNAC	6 cut(s)	39, 274, 304, 540, 648, 813
HpyAV	CCTTC	8 cut(s)	60, 259, 287, 509, 548, 604, 803, 935
HpyCH4III	ACNGT	2 cut(s)	1169, 1175
HpyCH4IV	ACGT	1 cut(s)	215
HpyCH4V	TGCA	8 cut(s)	10, 182, 191, 274, 389, 533, 1025, 1165
HpyF10VI	GCNNNNNNNGC	5 cut(s)	188, 294, 879, 1067, 1190
HpyF3I	CTNAG	3 cut(s)	409, 840, 1212
HpySE526I	ACGT	1 cut(s)	215
Hsp92II	CATG	7 cut(s)	10, 334, 418, 620, 787, 811, 857
KpnI	GGTACC	1 cut(s)	616
Ksp22I	TGATCA	3 cut(s)	3, 90, 106
Kzo9I	GATC	8 cut(s)	3, 90, 106, 546, 691, 925, 1018, 1029
LmnI	GCTCC	1 cut(s)	853
Lsp1109I	GCAGC	1 cut(s)	166
MabI	ACCWGGT	1 cut(s)	798
MaeI	CTAG	2 cut(s)	285, 665
MaeII	ACGT	1 cut(s)	215
MaeIII	GTNAC	3 cut(s)	802, 964, 1169
MalI	GATC	8 cut(s)	5, 92, 108, 548, 693, 927, 1020, 1031
MboI	GATC	8 cut(s)	3, 90, 106, 546, 691, 925, 1018, 1029
MboII	GAAGA	6 cut(s)	493, 633, 643, 812, 959, 1067
MflI	RGATCY	2 cut(s)	925, 1029
MhlI	GDGCHC	1 cut(s)	276
MluCI	AATT	3 cut(s)	319, 1048, 1137
MlyI	GAGTC	1 cut(s)	643
MmeI	TCCRAC	2 cut(s)	759, 1057
MnlI	CCTC	7 cut(s)	267, 292, 852, 861, 947, 1082, 1221
Mph1103I	ATGCAT	1 cut(s)	391
MseI	TTAA	1 cut(s)	777
MslI	CAYNNNNRTG	2 cut(s)	114, 329
MspI	CCGG	1 cut(s)	473
MspR9I	CCNGG	2 cut(s)	714, 800
MvaI	CCWGG	2 cut(s)	714, 800
MwoI	GCNNNNNNNGC	5 cut(s)	188, 294, 879, 1067, 1190
NcoI	CCATGG	1 cut(s)	616
NdeI	CATATG	1 cut(s)	67
NdeII	GATC	8 cut(s)	3, 90, 106, 546, 691, 925, 1018, 1029
NlaIII	CATG	7 cut(s)	10, 334, 418, 620, 787, 811, 857
NlaIV	GGNNCC	4 cut(s)	614, 711, 837, 1203
NmuCI	GTSAC	1 cut(s)	802
NsiI	ATGCAT	1 cut(s)	391
PaeR7I	CTCGAG	1 cut(s)	258
PagI	TCATGA	1 cut(s)	853
PfeI	GAWTC	5 cut(s)	97, 120, 565, 717, 760
PfoI	TCCNGGA	1 cut(s)	712
PinAI	ACCGGT	1 cut(s)	472
PkrI	GCNGC	1 cut(s)	181
PleI	GAGTC	1 cut(s)	643
PpsI	GAGTC	1 cut(s)	643
Psp6I	CCWGG	2 cut(s)	712, 798
PspEI	GGTNACC	1 cut(s)	802
PspGI	CCWGG	2 cut(s)	712, 798
PspN4I	GGNNCC	4 cut(s)	614, 711, 837, 1203
PspXI	VCTCGAGB	1 cut(s)	258
PstI	CTGCAG	1 cut(s)	1027
PstNI	CAGNNNCTG	2 cut(s)	202, 1173
PsuI	RGATCY	2 cut(s)	925, 1029
RsaI	GTAC	3 cut(s)	243, 614, 641
RsaNI	GTAC	3 cut(s)	242, 613, 640
RseI	CAYNNNNRTG	2 cut(s)	114, 329
SaqAI	TTAA	1 cut(s)	777
SatI	GCNGC	1 cut(s)	180
Sau3AI	GATC	8 cut(s)	3, 90, 106, 546, 691, 925, 1018, 1029
ScaI	AGTACT	1 cut(s)	243
SchI	GAGTC	1 cut(s)	643
ScrFI	CCNGG	2 cut(s)	714, 800
SduI	GDGCHC	1 cut(s)	276
SexAI	ACCWGGT	1 cut(s)	798
SfcI	CTRYAG	3 cut(s)	237, 1023, 1174
Sfr274I	CTCGAG	1 cut(s)	258
SgrAI	CRCCGGYG	1 cut(s)	472
SlaI	CTCGAG	1 cut(s)	258
SmiMI	CAYNNNNRTG	2 cut(s)	114, 329
SmlI	CTYRAG	1 cut(s)	258
SmoI	CTYRAG	1 cut(s)	258
Sse9I	AATT	3 cut(s)	319, 1048, 1137
SsiI	CCGC	1 cut(s)	71
SspI	AATATT	1 cut(s)	432
SspMI	CTAG	2 cut(s)	285, 665
StyD4I	CCNGG	2 cut(s)	712, 798
StyI	CCWWGG	1 cut(s)	616
TaaI	ACNGT	2 cut(s)	1169, 1175
TaiI	ACGT	1 cut(s)	218
TaqI	TCGA	5 cut(s)	259, 823, 939, 1087, 1221
TasI	AATT	3 cut(s)	319, 1048, 1137
TatI	WGTACW	1 cut(s)	241
TfiI	GAWTC	5 cut(s)	97, 120, 565, 717, 760
Tru1I	TTAA	1 cut(s)	777
Tru9I	TTAA	1 cut(s)	777
TscAI	CASTG	5 cut(s)	447, 540, 556, 703, 1212
TseFI	GTSAC	1 cut(s)	802
TseI	GCWGC	1 cut(s)	179
Tsp45I	GTSAC	1 cut(s)	802
TspDTI	ATGAA	5 cut(s)	11, 586, 800, 1070, 1170
TspRI	CASTG	5 cut(s)	447, 540, 556, 703, 1212
VneI	GTGCAC	1 cut(s)	272
XagI	CCTNNNNNAGG	1 cut(s)	797
XcmI	CCANNNNNNNNNTGG	1 cut(s)	968
XhoI	CTCGAG	1 cut(s)	258
XspI	CTAG	2 cut(s)	285, 665
ZrmI	AGTACT	1 cut(s)	243
Zsp2I	ATGCAT	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.