Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0004541

Physical Location & Seq

Genomic Coordinates Reverse (-)

50621035 .. 50638801

Gene Structure 17767 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG373300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGAAGACCTCGCGAAGAAATGGAAGACCTCGCGAAGATATGGAAGACCTCGCGAGGATATGGAAGACCTCGCGAAGAAATGGAAGACCTCGCGAGCATTTGCCCTGCTGTATTGCTGCCTGAATAGCCTGATGCTCCATGATTGTTATGCACGGTGGAAAGCTGCAGCTGGTAGATGGGCTGAGACACTACTAGTTGCGTACAAGACACTGGGAGTAGTGTTTGGGGGACTTGTGACATCGCCACTCTATGTTTACTCTTTGATGCGACTCAAATCTCCCACTGTAGATGACTACTTTGGCATCTACAGCATCATGTTTTGGACCCTTACTCTCATTGGAGTCGTCAAATATGCCACCATTTCTCTTAGAGCGGATGATGATGGTGAAGGCATGTGCATGCTTATTGGAGATGGTATTCTCACTCCTGCAATATCCGTTTGGTCTGCAATAGATGGAATAAGAGCACCTTTTCCATCTGTTAGTTCATCTGTGGTGAAAGTGCTTTCTACAGCTGTGCTTGTCATTCTTTTCATGGTACATAAATTTGGTACATCTCGAGTGAGCTTCATGTTTTCCCCGATTATGGGTGCATGGAGTTTGAGTATCATGCTCATTGGAATATATTGCATCATTCGACACTACCCGAGCATATTTAAGGCTGTATCACCACATTATATCTTCCGCTTCTTTTGGAGAAAAGGCAAGGAAGGCTGGCTGACCCTTGGTGGCACTGTCCTTTGCATAACAGGCTCAGAGGCATTGTTTGCTGATCTTGGTCATTTCAACCGAAGCACTATTCAGGTGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015318 GO:0015672 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0071804 GO:0071805 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K_trans

Protein Analysis

270

Amino Acids

30.36

Weight (kDa)

9.42

Isoelectric Point (pI)

39.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K_trans	PF02705	67 - 131	7.4e-16	K+ potassium transporter integral membrane domain
K_trans	PF02705	131 - 269	1.8e-48	K+ potassium transporter integral membrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004541)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35910 FvH4_4g35910 FvH4_4g35910 FvH4_4g35910 FvH4_6g30570 FvH4_6g30570
malus_domestica	MD13G1014000.v1.1
prunus_persica	Prupe.1G339400_v2.0.a1 Prupe.1G339400_v2.0.a1
pyrus_communis	pycom13g01190
rosa_chinensis	RchiOBHm_Chr2g0136991 RchiOBHm_Chr4g0445501
rosa_laevigata	RLG00000005736
rosa_multiflora	Rmu_co8256761.1_g000001 Rmu_co8447799.1_g000001 Rmu_sc0001374.1_g000059 Rmu_sc0001509.1_g000011 Rmu_sc0003556.1_g000028 Rmu_sc0010466.1_g000002
rosa_roxburghii	Rroxscaffold_2G00107790 Rroxscaffold_5G00385980
rosa_rugosa	Rorug02G0336800 Rorug04G0361800
rosa_samantha	Rh2AG385900 Rh2BG392800 Rh2CG373300 Rh2DG409000 Rh4AG423200 Rh4BG435200 Rh4DG431500
rosa_wichuraiana	Rw2G031580 Rw4G036300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	374
AccII	CGCG	5 cut(s)	14, 34, 54, 74, 94
AciI	CCGC	2 cut(s)	374, 685
AcsI	RAATTY	1 cut(s)	545
AfaI	GTAC	3 cut(s)	203, 540, 553
AfiI	CCNNNNNNNGG	2 cut(s)	586, 587
AgsI	TTSAA	1 cut(s)	787
AhlI	ACTAGT	1 cut(s)	193
AluBI	AGCT	4 cut(s)	164, 170, 515, 567
AluI	AGCT	4 cut(s)	164, 170, 515, 567
Alw21I	GWGCWC	1 cut(s)	469
Alw26I	GTCTC	1 cut(s)	179
Ama87I	CYCGRG	2 cut(s)	558, 646
ApeKI	GCWGC	3 cut(s)	117, 164, 167
ApoI	RAATTY	1 cut(s)	545
AspS9I	GGNCC	1 cut(s)	324
AsuHPI	GGTGA	3 cut(s)	398, 508, 660
AvaI	CYCGRG	2 cut(s)	558, 646
AvaII	GGWCC	1 cut(s)	324
BbsI	GAAGAC	5 cut(s)	12, 32, 52, 72, 92
Bbv12I	GWGCWC	1 cut(s)	469
BbvI	GCAGC	3 cut(s)	104, 151, 179
BccI	CCATC	5 cut(s)	171, 377, 407, 449, 484
BcoDI	GTCTC	1 cut(s)	179
BcuI	ACTAGT	1 cut(s)	193
BfaI	CTAG	1 cut(s)	194
BfmI	CTRYAG	4 cut(s)	165, 285, 307, 510
BisI	GCNGC	3 cut(s)	118, 165, 168
BlsI	GCNGC	3 cut(s)	119, 166, 169
Bme18I	GGWCC	1 cut(s)	324
BmeT110I	CYCGRG	2 cut(s)	558, 646
BmgT120I	GGNCC	1 cut(s)	324
BmiI	GGNNCC	1 cut(s)	326
BmrI	ACTGGG	1 cut(s)	221
BmsI	GCATC	5 cut(s)	123, 255, 312, 321, 639
BmuI	ACTGGG	1 cut(s)	221
BpiI	GAAGAC	5 cut(s)	12, 32, 52, 72, 92
BsaJI	CCNNGG	1 cut(s)	724
BsaXI	ACNNNNNCTCC	2 cut(s)	589, 619
Bsc4I	CCNNNNNNNGG	2 cut(s)	586, 587
Bse1I	ACTGG	1 cut(s)	216
BseDI	CCNNGG	1 cut(s)	724
BseGI	GGATG	1 cut(s)	382
BseLI	CCNNNNNNNGG	2 cut(s)	586, 587
BseMII	CTCAG	2 cut(s)	174, 768
BseNI	ACTGG	1 cut(s)	216
BseXI	GCAGC	3 cut(s)	104, 151, 179
Bsh1236I	CGCG	5 cut(s)	14, 34, 54, 74, 94
BsiHKAI	GWGCWC	1 cut(s)	469
BsiHKCI	CYCGRG	2 cut(s)	558, 646
BslFI	GGGAC	1 cut(s)	243
BslI	CCNNNNNNNGG	2 cut(s)	586, 587
BsmAI	GTCTC	1 cut(s)	179
BsmFI	GGGAC	1 cut(s)	243
BsoBI	CYCGRG	2 cut(s)	558, 646
Bsp1286I	GDGCHC	1 cut(s)	469
Bsp143I	GATC	1 cut(s)	772
Bsp68I	TCGCGA	5 cut(s)	14, 34, 54, 74, 94
BspACI	CCGC	2 cut(s)	374, 685
BspCNI	CTCAG	2 cut(s)	175, 767
BspFNI	CGCG	5 cut(s)	14, 34, 54, 74, 94
BspLI	GGNNCC	1 cut(s)	326
BspMAI	CTGCAG	1 cut(s)	169
BsrBI	CCGCTC	1 cut(s)	374
BsrI	ACTGG	1 cut(s)	216
BssECI	CCNNGG	1 cut(s)	724
BssMI	GATC	1 cut(s)	772
BssT1I	CCWWGG	1 cut(s)	724
Bst4CI	ACNGT	3 cut(s)	156, 286, 736
BstAPI	GCANNNNNTGC	1 cut(s)	767
BstC8I	GCNNGC	3 cut(s)	96, 401, 716
BstDEI	CTNAG	3 cut(s)	183, 368, 754
BstF5I	GGATG	1 cut(s)	382
BstFNI	CGCG	5 cut(s)	14, 34, 54, 74, 94
BstKTI	GATC	1 cut(s)	775
BstMAI	GTCTC	1 cut(s)	179
BstMBI	GATC	1 cut(s)	772
BstMWI	GCNNNNNNNGC	5 cut(s)	126, 309, 711, 750, 767
BstNSI	RCATGY	2 cut(s)	397, 403
BstSFI	CTRYAG	4 cut(s)	165, 285, 307, 510
BstUI	CGCG	5 cut(s)	14, 34, 54, 74, 94
BstV1I	GCAGC	3 cut(s)	104, 151, 179
BstV2I	GAAGAC	5 cut(s)	12, 32, 52, 72, 92
BtgZI	GCGATG	1 cut(s)	225
BtsCI	GGATG	1 cut(s)	382
BtsIMutI	CAGTG	3 cut(s)	209, 282, 732
BtuMI	TCGCGA	5 cut(s)	14, 34, 54, 74, 94
Cac8I	GCNNGC	3 cut(s)	96, 401, 716
Cfr13I	GGNCC	1 cut(s)	324
Csp6I	GTAC	3 cut(s)	202, 539, 552
CviAII	CATG	8 cut(s)	140, 316, 394, 400, 535, 571, 594, 610
CviQI	GTAC	3 cut(s)	202, 539, 552
DdeI	CTNAG	3 cut(s)	183, 368, 754
DpnI	GATC	1 cut(s)	774
DpnII	GATC	1 cut(s)	772
Eco130I	CCWWGG	1 cut(s)	724
Eco47I	GGWCC	1 cut(s)	324
Eco88I	CYCGRG	2 cut(s)	558, 646
EcoT14I	CCWWGG	1 cut(s)	724
ErhI	CCWWGG	1 cut(s)	724
FaeI	CATG	8 cut(s)	143, 319, 397, 403, 538, 574, 597, 613
FalI	AAGNNNNNCTT	2 cut(s)	454, 486
FaqI	GGGAC	1 cut(s)	243
FatI	CATG	8 cut(s)	139, 315, 393, 399, 534, 570, 593, 609
Fnu4HI	GCNGC	3 cut(s)	118, 165, 168
FokI	GGATG	1 cut(s)	389
Fsp4HI	GCNGC	3 cut(s)	118, 165, 168
FspBI	CTAG	1 cut(s)	194
GluI	GCNGC	3 cut(s)	118, 165, 168
Hin1II	CATG	8 cut(s)	143, 319, 397, 403, 538, 574, 597, 613
HinfI	GANTC	2 cut(s)	270, 342
HphI	GGTGA	3 cut(s)	398, 508, 660
Hpy166II	GTNNAC	2 cut(s)	256, 808
Hpy188I	TCNGA	1 cut(s)	757
Hpy188III	TCNNGA	6 cut(s)	13, 33, 53, 73, 93, 558
Hpy8I	GTNNAC	2 cut(s)	256, 808
HpyAV	CCTTC	2 cut(s)	383, 704
HpyCH4III	ACNGT	3 cut(s)	156, 286, 736
HpyCH4V	TGCA	8 cut(s)	152, 167, 399, 431, 449, 593, 630, 744
HpyF10VI	GCNNNNNNNGC	5 cut(s)	126, 309, 711, 750, 767
HpyF3I	CTNAG	3 cut(s)	183, 368, 754
Hsp92II	CATG	8 cut(s)	143, 319, 397, 403, 538, 574, 597, 613
Kzo9I	GATC	1 cut(s)	772
LmnI	GCTCC	1 cut(s)	141
LpnPI	CCDG	9 cut(s)	119, 134, 143, 156, 197, 441, 700, 735, 788
Lsp1109I	GCAGC	3 cut(s)	104, 151, 179
LweI	GCATC	5 cut(s)	123, 255, 312, 321, 639
MaeI	CTAG	1 cut(s)	194
MaeIII	GTNAC	1 cut(s)	235
MalI	GATC	1 cut(s)	774
MbiI	CCGCTC	1 cut(s)	374
MboI	GATC	1 cut(s)	772
MboII	GAAGA	9 cut(s)	17, 28, 37, 48, 57, 77, 88, 97, 673
MhlI	GDGCHC	1 cut(s)	469
MluCI	AATT	1 cut(s)	545
MlyI	GAGTC	2 cut(s)	264, 351
MnlI	CCTC	7 cut(s)	20, 40, 49, 60, 80, 100, 751
MseI	TTAA	1 cut(s)	657
MslI	CAYNNNNRTG	1 cut(s)	398
MspA1I	CMGCKG	2 cut(s)	170, 515
MvnI	CGCG	5 cut(s)	14, 34, 54, 74, 94
MwoI	GCNNNNNNNGC	5 cut(s)	126, 309, 711, 750, 767
NdeII	GATC	1 cut(s)	772
NlaIII	CATG	8 cut(s)	143, 319, 397, 403, 538, 574, 597, 613
NlaIV	GGNNCC	1 cut(s)	326
NmuCI	GTSAC	1 cut(s)	235
NruI	TCGCGA	5 cut(s)	14, 34, 54, 74, 94
NspI	RCATGY	2 cut(s)	397, 403
PaeI	GCATGC	1 cut(s)	403
PaeR7I	CTCGAG	1 cut(s)	558
PkrI	GCNGC	3 cut(s)	119, 166, 169
PleI	GAGTC	2 cut(s)	264, 350
PpsI	GAGTC	2 cut(s)	264, 350
PspN4I	GGNNCC	1 cut(s)	326
PspPI	GGNCC	1 cut(s)	324
PstI	CTGCAG	1 cut(s)	169
PvuII	CAGCTG	2 cut(s)	170, 515
RruI	TCGCGA	5 cut(s)	14, 34, 54, 74, 94
RsaI	GTAC	3 cut(s)	203, 540, 553
RsaNI	GTAC	3 cut(s)	202, 539, 552
RseI	CAYNNNNRTG	1 cut(s)	398
SaqAI	TTAA	1 cut(s)	657
SatI	GCNGC	3 cut(s)	118, 165, 168
Sau3AI	GATC	1 cut(s)	772
Sau96I	GGNCC	1 cut(s)	324
SchI	GAGTC	2 cut(s)	264, 351
SduI	GDGCHC	1 cut(s)	469
SfaNI	GCATC	5 cut(s)	123, 255, 312, 321, 639
SfcI	CTRYAG	4 cut(s)	165, 285, 307, 510
Sfr274I	CTCGAG	1 cut(s)	558
SinI	GGWCC	1 cut(s)	324
SlaI	CTCGAG	1 cut(s)	558
SmiMI	CAYNNNNRTG	1 cut(s)	398
SmlI	CTYRAG	1 cut(s)	558
SmoI	CTYRAG	1 cut(s)	558
SpeI	ACTAGT	1 cut(s)	193
SphI	GCATGC	1 cut(s)	403
Sse9I	AATT	1 cut(s)	545
SsiI	CCGC	2 cut(s)	374, 685
SspMI	CTAG	1 cut(s)	194
StyI	CCWWGG	1 cut(s)	724
TaaI	ACNGT	3 cut(s)	156, 286, 736
TaqI	TCGA	2 cut(s)	559, 637
TasI	AATT	1 cut(s)	545
Tru1I	TTAA	1 cut(s)	657
Tru9I	TTAA	1 cut(s)	657
TscAI	CASTG	3 cut(s)	216, 289, 739
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	3 cut(s)	117, 164, 167
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	3 cut(s)	477, 523, 559
TspGWI	ACGGA	1 cut(s)	427
TspRI	CASTG	3 cut(s)	216, 289, 739
VpaK11BI	GGWCC	1 cut(s)	324
XapI	RAATTY	1 cut(s)	545
XceI	RCATGY	2 cut(s)	397, 403
XhoI	CTCGAG	1 cut(s)	558
XspI	CTAG	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.