Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003556.1

Orthogroup ID

OG0004541

Physical Location & Seq

Genomic Coordinates Reverse (-)

127201 .. 129397

Gene Structure 2197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003556.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

atggcatcagatattccaaaaagaaaagcgaaaatatctttgcaagctaattgtgtagaaaatgatgatcatcaagaacaacatcagatcaaatcaaggaggtggaagcaaggtgggacttttgccttgtattcattactttgcaggaatatgaatattggaatcctctcttcaagaccttcaactccaaactcaagtctttcacactctatctatgatgagggcattgaaaatcagagtaggcttgcaaaatttttcaagaaaagtatagttgctagaaggttattgctttttattgccatgttaggcatgtgcatggttattggagatggcattcttacacctgcaatatctgttttgtcagcaatggatggagtaagggcaccttttccatctatcaaatcatctgttgtggaagcgctttctgcagtagtccttatccttctttttttattacaaaagtttggtacatctcgagtgagcttcctattttcccccattatgggtgcatggactttgagtaccccgcttgtaggaatttatagcatcataagccattatccaagcatattcaaggccatatcaccacactatatcttccgtttcttttggagaaacggtaaggaaggctggttgttgcttagtggaactgtcctttgcatcacaggtgaatatcatgaggcagatggcaccacagaagaaaccaaaaagagcagcaatctcctgaggaagcttgagaagtgccagaaagatcatactcttgattcccatatcgaagagcagtttagtggtggtaggttgttggcttgcatttcttcccgcccaggccaatgtggaagatctgatgggtacattttggaggagaaagaattagagttttacatgaagaaactccagaggaagaagggaaatgcagctggtgctgctgcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015318 GO:0015672 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0071804 GO:0071805 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K_trans

Protein Analysis

310

Amino Acids

34.51

Weight (kDa)

9.4

Isoelectric Point (pI)

55.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004541)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35910 FvH4_4g35910 FvH4_4g35910 FvH4_4g35910 FvH4_6g30570 FvH4_6g30570
malus_domestica	MD13G1014000.v1.1
prunus_persica	Prupe.1G339400_v2.0.a1 Prupe.1G339400_v2.0.a1
pyrus_communis	pycom13g01190
rosa_chinensis	RchiOBHm_Chr2g0136991 RchiOBHm_Chr4g0445501
rosa_laevigata	RLG00000005736
rosa_multiflora	Rmu_co8256761.1_g000001 Rmu_co8447799.1_g000001 Rmu_sc0001374.1_g000059 Rmu_sc0001509.1_g000011 Rmu_sc0003556.1_g000028 Rmu_sc0010466.1_g000002
rosa_roxburghii	Rroxscaffold_2G00107790 Rroxscaffold_5G00385980
rosa_rugosa	Rorug02G0336800 Rorug04G0361800
rosa_samantha	Rh2AG385900 Rh2BG392800 Rh2CG373300 Rh2DG409000 Rh4AG423200 Rh4BG435200 Rh4DG431500
rosa_wichuraiana	Rw2G031580 Rw4G036300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	352
Acc36I	ACCTGC	1 cut(s)	352
AccB1I	GGYRCC	2 cut(s)	382, 689
AciI	CCGC	2 cut(s)	527, 820
AcsI	RAATTY	2 cut(s)	251, 537
AfaI	GTAC	3 cut(s)	469, 523, 851
AfeI	AGCGCT	1 cut(s)	420
AfiI	CCNNNNNNNGG	3 cut(s)	502, 503, 533
AgsI	TTSAA	5 cut(s)	174, 183, 230, 259, 574
AjnI	CCWGG	1 cut(s)	823
AluBI	AGCT	4 cut(s)	47, 483, 733, 917
AluI	AGCT	4 cut(s)	47, 483, 733, 917
Ama87I	CYCGRG	1 cut(s)	474
Aor51HI	AGCGCT	1 cut(s)	420
AoxI	GGCC	2 cut(s)	576, 826
ApeKI	GCWGC	4 cut(s)	714, 914, 923, 926
ApoI	RAATTY	2 cut(s)	251, 537
AspLEI	GCGC	1 cut(s)	421
AsuHPI	GGTGA	2 cut(s)	576, 680
AvaI	CYCGRG	1 cut(s)	474
AxyI	CCTNAGG	1 cut(s)	725
BaeGI	GKGCMC	1 cut(s)	385
BanI	GGYRCC	2 cut(s)	382, 689
BbvI	GCAGC	4 cut(s)	726, 910, 913, 926
BccI	CCATC	5 cut(s)	323, 365, 400, 680, 839
BciT130I	CCWGG	1 cut(s)	825
BclI	TGATCA	1 cut(s)	67
BfaI	CTAG	1 cut(s)	276
BfmI	CTRYAG	1 cut(s)	426
BfoI	RGCGCY	1 cut(s)	422
BfuAI	ACCTGC	1 cut(s)	352
BglII	AGATCT	1 cut(s)	839
BisI	GCNGC	4 cut(s)	715, 915, 924, 927
BlsI	GCNGC	4 cut(s)	716, 916, 925, 928
Bme1390I	CCNGG	1 cut(s)	825
BmeT110I	CYCGRG	1 cut(s)	474
BmiI	GGNNCC	2 cut(s)	384, 691
BmrFI	CCNGG	1 cut(s)	825
BmsI	GCATC	3 cut(s)	14, 555, 669
BpmI	CTGGAG	1 cut(s)	878
BpuEI	CTTGAG	2 cut(s)	178, 755
BsaBI	GATNNNNATC	1 cut(s)	69
BsaJI	CCNNGG	1 cut(s)	823
BsaXI	ACNNNNNCTCC	2 cut(s)	604, 634
Bsc4I	CCNNNNNNNGG	3 cut(s)	502, 503, 533
Bse21I	CCTNAGG	1 cut(s)	725
Bse3DI	GCAATG	1 cut(s)	372
Bse8I	GATNNNNATC	1 cut(s)	69
BseBI	CCWGG	1 cut(s)	825
BseDI	CCNNGG	1 cut(s)	823
BseGI	GGATG	1 cut(s)	376
BseJI	GATNNNNATC	1 cut(s)	69
BseLI	CCNNNNNNNGG	3 cut(s)	502, 503, 533
BseMI	GCAATG	1 cut(s)	372
BseMII	CTCAG	1 cut(s)	716
BseRI	GAGGAG	1 cut(s)	875
BseSI	GKGCMC	1 cut(s)	385
BseXI	GCAGC	4 cut(s)	726, 910, 913, 926
BshFI	GGCC	2 cut(s)	578, 828
BshNI	GGYRCC	2 cut(s)	382, 689
BsiHKCI	CYCGRG	1 cut(s)	474
BslFI	GGGAC	1 cut(s)	130
BslI	CCNNNNNNNGG	3 cut(s)	502, 503, 533
BsmFI	GGGAC	1 cut(s)	130
BsmI	GAATGC	1 cut(s)	333
BsnI	GGCC	2 cut(s)	578, 828
BsoBI	CYCGRG	1 cut(s)	474
Bsp1286I	GDGCHC	1 cut(s)	385
Bsp143I	GATC	4 cut(s)	67, 87, 751, 839
BspACI	CCGC	2 cut(s)	527, 820
BspANI	GGCC	2 cut(s)	578, 828
BspCNI	CTCAG	1 cut(s)	717
BspHI	TCATGA	1 cut(s)	676
BspLI	GGNNCC	2 cut(s)	384, 691
BspMAI	CTGCAG	1 cut(s)	430
BspMI	ACCTGC	1 cut(s)	352
BspQI	GCTCTTC	1 cut(s)	771
BspT107I	GGYRCC	2 cut(s)	382, 689
BsrDI	GCAATG	1 cut(s)	372
BssECI	CCNNGG	1 cut(s)	823
BssMI	GATC	4 cut(s)	67, 87, 751, 839
Bst2UI	CCWGG	1 cut(s)	825
Bst4CI	ACNGT	2 cut(s)	620, 652
Bst6I	CTCTTC	2 cut(s)	175, 771
BstAPI	GCANNNNNTGC	1 cut(s)	920
BstC8I	GCNNGC	3 cut(s)	45, 246, 808
BstDEI	CTNAG	2 cut(s)	641, 725
BstF5I	GGATG	1 cut(s)	376
BstH2I	RGCGCY	1 cut(s)	422
BstHHI	GCGC	1 cut(s)	421
BstKTI	GATC	4 cut(s)	70, 90, 754, 842
BstMBI	GATC	4 cut(s)	67, 87, 751, 839
BstMWI	GCNNNNNNNGC	4 cut(s)	425, 552, 920, 923
BstNI	CCWGG	1 cut(s)	825
BstNSI	RCATGY	1 cut(s)	313
BstSCI	CCNGG	1 cut(s)	823
BstSFI	CTRYAG	1 cut(s)	426
BstSLI	GKGCMC	1 cut(s)	385
BstV1I	GCAGC	4 cut(s)	726, 910, 913, 926
BstX2I	RGATCY	1 cut(s)	839
BstYI	RGATCY	1 cut(s)	839
Bsu36I	CCTNAGG	1 cut(s)	725
BsuRI	GGCC	2 cut(s)	578, 828
BtsCI	GGATG	1 cut(s)	376
BveI	ACCTGC	1 cut(s)	352
Cac8I	GCNNGC	3 cut(s)	45, 246, 808
CciI	TCATGA	1 cut(s)	676
CfoI	GCGC	1 cut(s)	421
Csp6I	GTAC	3 cut(s)	468, 522, 850
CviAII	CATG	6 cut(s)	301, 310, 316, 510, 677, 883
CviQI	GTAC	3 cut(s)	468, 522, 850
DdeI	CTNAG	2 cut(s)	641, 725
DpnI	GATC	4 cut(s)	69, 89, 753, 841
DpnII	GATC	4 cut(s)	67, 87, 751, 839
Eam1104I	CTCTTC	2 cut(s)	175, 771
EarI	CTCTTC	2 cut(s)	175, 771
Eco47III	AGCGCT	1 cut(s)	420
Eco81I	CCTNAGG	1 cut(s)	725
Eco88I	CYCGRG	1 cut(s)	474
EcoRII	CCWGG	1 cut(s)	823
FaeI	CATG	6 cut(s)	304, 313, 319, 513, 680, 886
FalI	AAGNNNNNCTT	2 cut(s)	370, 402
FaqI	GGGAC	1 cut(s)	130
FatI	CATG	6 cut(s)	300, 309, 315, 509, 676, 882
FauI	CCCGC	2 cut(s)	534, 827
FbaI	TGATCA	1 cut(s)	67
Fnu4HI	GCNGC	4 cut(s)	715, 915, 924, 927
FokI	GGATG	1 cut(s)	383
Fsp4HI	GCNGC	4 cut(s)	715, 915, 924, 927
FspBI	CTAG	1 cut(s)	276
GlaI	GCGC	1 cut(s)	420
GluI	GCNGC	4 cut(s)	715, 915, 924, 927
GsuI	CTGGAG	1 cut(s)	878
HaeII	RGCGCY	1 cut(s)	422
HaeIII	GGCC	2 cut(s)	578, 828
HhaI	GCGC	1 cut(s)	421
Hin1II	CATG	6 cut(s)	304, 313, 319, 513, 680, 886
Hin6I	GCGC	1 cut(s)	419
HinP1I	GCGC	1 cut(s)	419
HindIII	AAGCTT	1 cut(s)	731
HinfI	GANTC	2 cut(s)	162, 764
HphI	GGTGA	2 cut(s)	576, 680
Hpy188I	TCNGA	4 cut(s)	10, 87, 237, 844
Hpy188III	TCNNGA	8 cut(s)	74, 174, 259, 474, 677, 724, 761, 895
HpyAV	CCTTC	5 cut(s)	189, 273, 452, 620, 898
HpyCH4III	ACNGT	2 cut(s)	620, 652
HpyF10VI	GCNNNNNNNGC	4 cut(s)	425, 552, 920, 923
HpyF3I	CTNAG	2 cut(s)	641, 725
Hsp92II	CATG	6 cut(s)	304, 313, 319, 513, 680, 886
HspAI	GCGC	1 cut(s)	419
Ksp22I	TGATCA	1 cut(s)	67
Kzo9I	GATC	4 cut(s)	67, 87, 751, 839
LguI	GCTCTTC	1 cut(s)	771
Lsp1109I	GCAGC	4 cut(s)	726, 910, 913, 926
LweI	GCATC	3 cut(s)	14, 555, 669
MaeI	CTAG	1 cut(s)	276
MalI	GATC	4 cut(s)	69, 89, 753, 841
MboI	GATC	4 cut(s)	67, 87, 751, 839
MboII	GAAGA	8 cut(s)	162, 589, 710, 788, 807, 849, 898, 913
MflI	RGATCY	1 cut(s)	839
MhlI	GDGCHC	1 cut(s)	385
MluCI	AATT	4 cut(s)	49, 251, 537, 869
MnlI	CCTC	7 cut(s)	93, 176, 214, 673, 720, 853, 891
MslI	CAYNNNNRTG	1 cut(s)	314
MspA1I	CMGCKG	1 cut(s)	917
MspR9I	CCNGG	1 cut(s)	825
Mva1269I	GAATGC	1 cut(s)	333
MvaI	CCWGG	1 cut(s)	825
MwoI	GCNNNNNNNGC	4 cut(s)	425, 552, 920, 923
NdeII	GATC	4 cut(s)	67, 87, 751, 839
NlaIII	CATG	6 cut(s)	304, 313, 319, 513, 680, 886
NlaIV	GGNNCC	2 cut(s)	384, 691
NspI	RCATGY	1 cut(s)	313
PaeR7I	CTCGAG	1 cut(s)	474
PagI	TCATGA	1 cut(s)	676
PaqCI	CACCTGC	1 cut(s)	352
PciSI	GCTCTTC	1 cut(s)	771
PctI	GAATGC	1 cut(s)	333
PfeI	GAWTC	2 cut(s)	162, 764
PkrI	GCNGC	4 cut(s)	716, 916, 925, 928
Psp6I	CCWGG	1 cut(s)	823
PspGI	CCWGG	1 cut(s)	823
PspN4I	GGNNCC	2 cut(s)	384, 691
PstI	CTGCAG	1 cut(s)	430
PsuI	RGATCY	1 cut(s)	839
PvuII	CAGCTG	1 cut(s)	917
RsaI	GTAC	3 cut(s)	469, 523, 851
RsaNI	GTAC	3 cut(s)	468, 522, 850
RseI	CAYNNNNRTG	1 cut(s)	314
SapI	GCTCTTC	1 cut(s)	771
SatI	GCNGC	4 cut(s)	715, 915, 924, 927
Sau3AI	GATC	4 cut(s)	67, 87, 751, 839
ScrFI	CCNGG	1 cut(s)	825
SduI	GDGCHC	1 cut(s)	385
SfaNI	GCATC	3 cut(s)	14, 555, 669
SfcI	CTRYAG	1 cut(s)	426
Sfr274I	CTCGAG	1 cut(s)	474
SlaI	CTCGAG	1 cut(s)	474
SmiMI	CAYNNNNRTG	1 cut(s)	314
SmlI	CTYRAG	3 cut(s)	193, 474, 734
SmoI	CTYRAG	3 cut(s)	193, 474, 734
Sse9I	AATT	4 cut(s)	49, 251, 537, 869
SsiI	CCGC	2 cut(s)	527, 820
SspI	AATATT	1 cut(s)	157
SspMI	CTAG	1 cut(s)	276
StyD4I	CCNGG	1 cut(s)	823
TaaI	ACNGT	2 cut(s)	620, 652
TaqI	TCGA	2 cut(s)	475, 774
TasI	AATT	4 cut(s)	49, 251, 537, 869
TfiI	GAWTC	2 cut(s)	162, 764
TseI	GCWGC	4 cut(s)	714, 914, 923, 926
TspDTI	ATGAA	3 cut(s)	123, 167, 899
TspGWI	ACGGA	1 cut(s)	590
XapI	RAATTY	2 cut(s)	251, 537
XceI	RCATGY	1 cut(s)	313
XhoI	CTCGAG	1 cut(s)	474
XspI	CTAG	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.