Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8275511.1

Orthogroup ID

OG0007022

Physical Location & Seq

Genomic Coordinates Reverse (-)

231 .. 837

Gene Structure 607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8275511.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 320 bp

tgaaaaagaagaagaagaagccaattgagaccagtattttgaatgaggagcctggcgatgtaccggaggatttggatgagcacccgggtgaggatgaagaaggagaaggaattttactggaggcctccaatccttgggagggtagtgatcgtgattatgaatatgaggagcttcttggaagggtgtataacattcttagggagaataatccggagctagctggagacaggcgtaggacagttatgaggcctccacaagttctacgtgagggcacaaagaaaactgtctttgtgaatttcatggatctgtgcaagacgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

eIF-5_eIF-2B

Protein Analysis

105

Amino Acids

12.14

Weight (kDa)

4.75

Isoelectric Point (pI)

51.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20920 AT5G20920 AT5G20920
rosa_chinensis	RchiOBHm_Chr2g0109961 RchiOBHm_Chr5g0073521
rosa_laevigata	RLG00000017774 RLG00000036390
rosa_multiflora	Rmu_co8275511.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007750
rosa_rugosa	Rorug02G0164300 Rorug02G0164400 Rorug02G0164500 Rorug02G0164600 Rorug05G0424200 Rorug05G0424300
rosa_samantha	Rh2AG216200 Rh2BG226300 Rh2CG218400 Rh2DG221800 Rh5AG481500 Rh5BG502200 Rh5CG525400 Rh5DG514400
rosa_wichuraiana	Rw2G016700 Rw5G044730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	134
AccIII	TCCGGA	1 cut(s)	210
AclWI	GGATC	1 cut(s)	311
AcsI	RAATTY	2 cut(s)	110, 294
AfaI	GTAC	1 cut(s)	62
AfiI	CCNNNNNNNGG	3 cut(s)	90, 134, 139
AgsI	TTSAA	1 cut(s)	42
AjnI	CCWGG	1 cut(s)	51
AleI	CACNNNNGTG	1 cut(s)	86
AluBI	AGCT	3 cut(s)	171, 216, 220
AluI	AGCT	3 cut(s)	171, 216, 220
Alw21I	GWGCWC	1 cut(s)	83
Alw26I	GTCTC	2 cut(s)	22, 218
AlwI	GGATC	1 cut(s)	311
Ama87I	CYCGRG	1 cut(s)	84
Aor13HI	TCCGGA	1 cut(s)	210
AoxI	GGCC	2 cut(s)	122, 247
ApoI	RAATTY	2 cut(s)	110, 294
ArsI	GACNNNNNNTTYG	2 cut(s)	21, 53
AsuC2I	CCSGG	2 cut(s)	85, 86
AsuHPI	GGTGA	1 cut(s)	100
AsuNHI	GCTAGC	1 cut(s)	216
AvaI	CYCGRG	1 cut(s)	84
BaeGI	GKGCMC	1 cut(s)	274
BarI	GAAGNNNNNNTAC	2 cut(s)	98, 130
Bbv12I	GWGCWC	1 cut(s)	83
BciT130I	CCWGG	1 cut(s)	53
BcnI	CCSGG	2 cut(s)	85, 86
BcoDI	GTCTC	2 cut(s)	22, 218
BfaI	CTAG	1 cut(s)	217
Bme1390I	CCNGG	3 cut(s)	53, 85, 86
BmeT110I	CYCGRG	1 cut(s)	84
BmiI	GGNNCC	1 cut(s)	50
BmrFI	CCNGG	3 cut(s)	53, 85, 86
BmtI	GCTAGC	1 cut(s)	220
BpmI	CTGGAG	2 cut(s)	139, 242
BpuMI	CCSGG	2 cut(s)	85, 86
BsaAI	YACGTR	1 cut(s)	265
BsaI	GGTCTC	1 cut(s)	22
BsaJI	CCNNGG	2 cut(s)	84, 133
BsaWI	WCCGGW	2 cut(s)	63, 210
Bsc4I	CCNNNNNNNGG	3 cut(s)	90, 134, 139
Bse1I	ACTGG	2 cut(s)	32, 122
BseAI	TCCGGA	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	53
BseDI	CCNNGG	2 cut(s)	84, 133
BseGI	GGATG	2 cut(s)	81, 99
BseLI	CCNNNNNNNGG	3 cut(s)	90, 134, 139
BseNI	ACTGG	2 cut(s)	32, 122
BseRI	GAGGAG	2 cut(s)	61, 181
BseSI	GKGCMC	1 cut(s)	274
BshFI	GGCC	2 cut(s)	124, 249
BsiHKAI	GWGCWC	1 cut(s)	83
BsiHKCI	CYCGRG	1 cut(s)	84
BsiSI	CCGG	3 cut(s)	64, 85, 211
BslI	CCNNNNNNNGG	3 cut(s)	90, 134, 139
BsmAI	GTCTC	2 cut(s)	22, 218
BsnI	GGCC	2 cut(s)	124, 249
Bso31I	GGTCTC	1 cut(s)	22
BsoBI	CYCGRG	1 cut(s)	84
Bsp1286I	GDGCHC	2 cut(s)	83, 274
Bsp13I	TCCGGA	1 cut(s)	210
Bsp143I	GATC	2 cut(s)	147, 303
BspANI	GGCC	2 cut(s)	124, 249
BspEI	TCCGGA	1 cut(s)	210
BspLI	GGNNCC	1 cut(s)	50
BspOI	GCTAGC	1 cut(s)	220
BspPI	GGATC	1 cut(s)	311
BspTNI	GGTCTC	1 cut(s)	22
BsrI	ACTGG	2 cut(s)	32, 122
BssECI	CCNNGG	2 cut(s)	84, 133
BssMI	GATC	2 cut(s)	147, 303
BssT1I	CCWWGG	1 cut(s)	133
Bst2UI	CCWGG	1 cut(s)	53
Bst4CI	ACNGT	2 cut(s)	240, 285
BstBAI	YACGTR	1 cut(s)	265
BstC8I	GCNNGC	1 cut(s)	218
BstDEI	CTNAG	1 cut(s)	196
BstF5I	GGATG	2 cut(s)	81, 99
BstKTI	GATC	2 cut(s)	150, 306
BstMAI	GTCTC	2 cut(s)	22, 218
BstMBI	GATC	2 cut(s)	147, 303
BstNI	CCWGG	1 cut(s)	53
BstSCI	CCNGG	3 cut(s)	51, 83, 84
BstSLI	GKGCMC	1 cut(s)	274
BstX2I	RGATCY	1 cut(s)	303
BstYI	RGATCY	1 cut(s)	303
BsuRI	GGCC	2 cut(s)	124, 249
BtgZI	GCGATG	1 cut(s)	71
BtsCI	GGATG	2 cut(s)	81, 99
Cac8I	GCNNGC	1 cut(s)	218
Cfr9I	CCCGGG	1 cut(s)	84
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	1 cut(s)	300
CviJI	RGCY	7 cut(s)	21, 51, 124, 171, 216, 220, 249
CviKI_1	RGCY	7 cut(s)	21, 51, 124, 171, 216, 220, 249
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	1 cut(s)	196
DpnI	GATC	2 cut(s)	149, 305
DpnII	GATC	2 cut(s)	147, 303
Eco130I	CCWWGG	1 cut(s)	133
Eco147I	AGGCCT	2 cut(s)	124, 249
Eco31I	GGTCTC	1 cut(s)	22
Eco88I	CYCGRG	1 cut(s)	84
EcoRII	CCWGG	1 cut(s)	51
EcoT14I	CCWWGG	1 cut(s)	133
ErhI	CCWWGG	1 cut(s)	133
FaeI	CATG	1 cut(s)	303
FaiI	YATR	5 cut(s)	158, 164, 188, 244, 301
FatI	CATG	1 cut(s)	299
FokI	GGATG	2 cut(s)	88, 106
FspBI	CTAG	1 cut(s)	217
GsuI	CTGGAG	2 cut(s)	139, 242
HaeIII	GGCC	2 cut(s)	124, 249
HapII	CCGG	3 cut(s)	64, 85, 211
Hin1II	CATG	1 cut(s)	303
HpaII	CCGG	3 cut(s)	64, 85, 211
HphI	GGTGA	1 cut(s)	100
Hpy188III	TCNNGA	2 cut(s)	151, 211
HpyAV	CCTTC	3 cut(s)	94, 100, 173
HpyCH4III	ACNGT	2 cut(s)	240, 285
HpyCH4IV	ACGT	2 cut(s)	264, 316
HpyCH4V	TGCA	1 cut(s)	311
HpyF3I	CTNAG	1 cut(s)	196
HpySE526I	ACGT	2 cut(s)	264, 316
Hsp92II	CATG	1 cut(s)	303
Kpn2I	TCCGGA	1 cut(s)	210
Kzo9I	GATC	2 cut(s)	147, 303
LmnI	GCTCC	3 cut(s)	48, 168, 213
LpnPI	CCDG	9 cut(s)	38, 45, 65, 77, 98, 103, 206, 213, 224
MaeI	CTAG	1 cut(s)	217
MaeII	ACGT	2 cut(s)	264, 316
MalI	GATC	2 cut(s)	149, 305
MboI	GATC	2 cut(s)	147, 303
MboII	GAAGA	4 cut(s)	21, 24, 27, 109
MfeI	CAATTG	1 cut(s)	23
MflI	RGATCY	1 cut(s)	303
MhlI	GDGCHC	2 cut(s)	83, 274
MluCI	AATT	3 cut(s)	23, 110, 294
MroI	TCCGGA	1 cut(s)	210
MslI	CAYNNNNRTG	1 cut(s)	86
MspI	CCGG	3 cut(s)	64, 85, 211
MspR9I	CCNGG	3 cut(s)	53, 85, 86
MunI	CAATTG	1 cut(s)	23
MvaI	CCWGG	1 cut(s)	53
NciI	CCSGG	2 cut(s)	85, 86
NdeII	GATC	2 cut(s)	147, 303
NheI	GCTAGC	1 cut(s)	216
NlaIII	CATG	1 cut(s)	303
NlaIV	GGNNCC	1 cut(s)	50
OliI	CACNNNNGTG	1 cut(s)	86
PceI	AGGCCT	2 cut(s)	124, 249
PflMI	CCANNNNNTGG	1 cut(s)	134
Ppu21I	YACGTR	1 cut(s)	265
Psp6I	CCWGG	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	51
PspN4I	GGNNCC	1 cut(s)	50
PsuI	RGATCY	1 cut(s)	303
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
RseI	CAYNNNNRTG	1 cut(s)	86
Sau3AI	GATC	2 cut(s)	147, 303
ScrFI	CCNGG	3 cut(s)	53, 85, 86
SduI	GDGCHC	2 cut(s)	83, 274
SetI	ASST	5 cut(s)	173, 218, 222, 267, 319
SmaI	CCCGGG	1 cut(s)	86
SmiMI	CAYNNNNRTG	1 cut(s)	86
Sse9I	AATT	3 cut(s)	23, 110, 294
SseBI	AGGCCT	2 cut(s)	124, 249
SspMI	CTAG	1 cut(s)	217
StuI	AGGCCT	2 cut(s)	124, 249
StyD4I	CCNGG	3 cut(s)	51, 83, 84
StyI	CCWWGG	1 cut(s)	133
TaaI	ACNGT	2 cut(s)	240, 285
TaiI	ACGT	2 cut(s)	267, 319
TasI	AATT	3 cut(s)	23, 110, 294
TspDTI	ATGAA	3 cut(s)	110, 173, 288
TspMI	CCCGGG	1 cut(s)	84
Van91I	CCANNNNNTGG	1 cut(s)	134
XapI	RAATTY	2 cut(s)	110, 294
XmaI	CCCGGG	1 cut(s)	84
XspI	CTAG	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.