Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007022

Physical Location & Seq

Genomic Coordinates Reverse (-)

14645983 .. 14646759

Gene Structure 777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0164500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCGGCCGGCAGCCCCAAAACCCCAAAACCCTCGTATGCAGCAACCCTAGCGGCTGACTCCCCTCTTCCTTTCGCCATTGCTGATCTGCCATCACCATTCACAGAAGATGGTATGGTTTCAATTCGCATATCAGAAGAACCCTTTCTTCGGGGACTTGATCGCTGCAAGACCAATTTAATTGGTCGTGTAACTGTGCCAACCAAGACTCCAGAACTTGTCCAACACTTACGGTCGCTCTGGTCTGGTCTTGATCCTTGGACCGTGGCGCCTCTTGGAAGAGGTTTTTTCATGCTTCAGTTTAATAGCCTGGTTGACATGCAACGCGTCTGGTCATTAGGTTCTGTACGACTCAACTCTGGGATGCTTCGTCTAATCAAGTGGTCACCTGAGTTCTCGCCATTACCCTACAAGAATACCTTTGCACAAGTCTGGGTGAGACTCTGGGATCTAGGGTTTGCTTACTGGGACCAACAAACCCTGTTTGAAATAGCCGCAGGTGTGGGAACGCCCCTTAAGCTTGATCCGAGGACAAAGAATCGCACAGTGGGCTTGTATGCCAGAGTTTTAATTGATGTCGACTTCTCACACCCTCTTCCAGATAAACTCAGGGTAACTAGGGCAAATGGAGAAGTGGTAGTGATCGGAGTGGAGTATGAAACAGAGCCAGAAATTTGCAGCAACTGTGGCATCATTGGTCATTTGGCTGCTTCATGCCGTTCTGCAGTGCTCCATAATGACGACACTGTGAGTCGAGGCAGGTCGTTGGAGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

eIF-5_eIF-2B

Protein Analysis

258

Amino Acids

28.67

Weight (kDa)

8.36

Isoelectric Point (pI)

41.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4283	PF14111	54 - 135	4.8e-10	Domain of unknown function (DUF4283)
zf-CCHC_4	PF14392	193 - 240	1e-07	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20920 AT5G20920 AT5G20920
rosa_chinensis	RchiOBHm_Chr2g0109961 RchiOBHm_Chr5g0073521
rosa_laevigata	RLG00000017774 RLG00000036390
rosa_multiflora	Rmu_co8275511.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007750
rosa_rugosa	Rorug02G0164300 Rorug02G0164400 Rorug02G0164500 Rorug02G0164600 Rorug05G0424200 Rorug05G0424300
rosa_samantha	Rh2AG216200 Rh2BG226300 Rh2CG218400 Rh2DG221800 Rh5AG481500 Rh5BG502200 Rh5CG525400 Rh5DG514400
rosa_wichuraiana	Rw2G016700 Rw5G044730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	488
Acc36I	ACCTGC	2 cut(s)	488, 750
AccB1I	GGYRCC	1 cut(s)	268
AccI	GTMKAC	1 cut(s)	579
AccII	CGCG	1 cut(s)	327
AciI	CCGC	3 cut(s)	5, 53, 495
AclWI	GGATC	3 cut(s)	248, 456, 518
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	1 cut(s)	672
AcuI	CTGAAG	1 cut(s)	281
AcyI	GRCGYC	1 cut(s)	269
AfaI	GTAC	1 cut(s)	348
AfiI	CCNNNNNNNGG	1 cut(s)	150
AflII	CTTAAG	1 cut(s)	515
AflIII	ACRYGT	1 cut(s)	325
AgsI	TTSAA	2 cut(s)	123, 488
AjnI	CCWGG	1 cut(s)	309
AluBI	AGCT	1 cut(s)	520
AluI	AGCT	1 cut(s)	520
Alw21I	GWGCWC	1 cut(s)	732
Alw26I	GTCTC	1 cut(s)	433
AlwI	GGATC	3 cut(s)	248, 456, 518
AlwNI	CAGNNNCTG	1 cut(s)	684
AoxI	GGCC	1 cut(s)	6
ApeKI	GCWGC	5 cut(s)	12, 41, 165, 678, 707
ApoI	RAATTY	1 cut(s)	672
Asp700I	GAANNNNTTC	1 cut(s)	144
AspLEI	GCGC	1 cut(s)	271
AspS9I	GGNCC	2 cut(s)	261, 469
AsuHPI	GGTGA	3 cut(s)	87, 378, 448
AvaII	GGWCC	2 cut(s)	261, 469
BanI	GGYRCC	1 cut(s)	268
Bbv12I	GWGCWC	1 cut(s)	732
BbvI	GCAGC	5 cut(s)	24, 53, 152, 690, 694
BccI	CCATC	2 cut(s)	100, 104
BceAI	ACGGC	1 cut(s)	702
BciT130I	CCWGG	1 cut(s)	311
BcoDI	GTCTC	1 cut(s)	433
BfaI	CTAG	3 cut(s)	50, 452, 618
BfmI	CTRYAG	1 cut(s)	723
BfoI	RGCGCY	1 cut(s)	272
BfrI	CTTAAG	1 cut(s)	515
BfuAI	ACCTGC	2 cut(s)	488, 750
BisI	GCNGC	8 cut(s)	6, 13, 42, 54, 166, 495, 679, 708
BlsI	GCNGC	8 cut(s)	7, 14, 43, 55, 167, 496, 680, 709
Bme1390I	CCNGG	1 cut(s)	311
Bme18I	GGWCC	2 cut(s)	261, 469
BmgT120I	GGNCC	2 cut(s)	261, 469
BmiI	GGNNCC	2 cut(s)	270, 470
BmrFI	CCNGG	1 cut(s)	311
BmrI	ACTGGG	1 cut(s)	475
BmsI	GCATC	2 cut(s)	354, 699
BmuI	ACTGGG	1 cut(s)	475
BpmI	CTGGAG	1 cut(s)	195
BsaHI	GRCGYC	1 cut(s)	269
BsaJI	CCNNGG	3 cut(s)	257, 264, 527
BsaXI	ACNNNNNCTCC	4 cut(s)	193, 223, 621, 651
Bsc4I	CCNNNNNNNGG	1 cut(s)	150
Bse118I	RCCGGY	1 cut(s)	8
Bse1I	ACTGG	1 cut(s)	470
Bse3DI	GCAATG	1 cut(s)	78
BseBI	CCWGG	1 cut(s)	311
BseDI	CCNNGG	3 cut(s)	257, 264, 527
BseGI	GGATG	1 cut(s)	369
BseLI	CCNNNNNNNGG	1 cut(s)	150
BseMI	GCAATG	1 cut(s)	78
BseMII	CTCAG	2 cut(s)	381, 622
BseNI	ACTGG	1 cut(s)	470
BseX3I	CGGCCG	1 cut(s)	6
BseXI	GCAGC	5 cut(s)	24, 53, 152, 690, 694
Bsh1236I	CGCG	1 cut(s)	327
Bsh1285I	CGRYCG	2 cut(s)	9, 236
BshFI	GGCC	1 cut(s)	8
BshNI	GGYRCC	1 cut(s)	268
BsiEI	CGRYCG	2 cut(s)	9, 236
BsiHKAI	GWGCWC	1 cut(s)	732
BsiSI	CCGG	1 cut(s)	9
BslFI	GGGAC	2 cut(s)	168, 482
BslI	CCNNNNNNNGG	1 cut(s)	150
BsmAI	GTCTC	1 cut(s)	433
BsmFI	GGGAC	2 cut(s)	168, 482
BsnI	GGCC	1 cut(s)	8
Bsp1286I	GDGCHC	1 cut(s)	732
Bsp143I	GATC	6 cut(s)	85, 160, 253, 448, 523, 642
BspACI	CCGC	3 cut(s)	5, 53, 495
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	2 cut(s)	382, 621
BspFNI	CGCG	1 cut(s)	327
BspLI	GGNNCC	2 cut(s)	270, 470
BspMAI	CTGCAG	1 cut(s)	727
BspMI	ACCTGC	2 cut(s)	488, 750
BspPI	GGATC	3 cut(s)	248, 456, 518
BspT107I	GGYRCC	1 cut(s)	268
BspTI	CTTAAG	1 cut(s)	515
BsrDI	GCAATG	1 cut(s)	78
BsrFI	RCCGGY	1 cut(s)	8
BsrI	ACTGG	1 cut(s)	470
BssAI	RCCGGY	1 cut(s)	8
BssECI	CCNNGG	3 cut(s)	257, 264, 527
BssMI	GATC	6 cut(s)	85, 160, 253, 448, 523, 642
BssNI	GRCGYC	1 cut(s)	269
BssT1I	CCWWGG	1 cut(s)	257
Bst2UI	CCWGG	1 cut(s)	311
Bst4CI	ACNGT	6 cut(s)	196, 234, 265, 547, 686, 748
Bst6I	CTCTTC	3 cut(s)	72, 274, 600
BstACI	GRCGYC	1 cut(s)	269
BstAFI	CTTAAG	1 cut(s)	515
BstC8I	GCNNGC	1 cut(s)	10
BstDEI	CTNAG	2 cut(s)	390, 608
BstDSI	CCRYGG	1 cut(s)	264
BstEII	GGTNACC	1 cut(s)	384
BstF5I	GGATG	1 cut(s)	369
BstFNI	CGCG	1 cut(s)	327
BstH2I	RGCGCY	1 cut(s)	272
BstHHI	GCGC	1 cut(s)	271
BstKTI	GATC	6 cut(s)	88, 163, 256, 451, 526, 645
BstMAI	GTCTC	1 cut(s)	433
BstMBI	GATC	6 cut(s)	85, 160, 253, 448, 523, 642
BstMCI	CGRYCG	2 cut(s)	9, 236
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 517, 549, 687
BstNI	CCWGG	1 cut(s)	311
BstNSI	RCATGY	1 cut(s)	322
BstPI	GGTNACC	1 cut(s)	384
BstSCI	CCNGG	1 cut(s)	309
BstSFI	CTRYAG	1 cut(s)	723
BstUI	CGCG	1 cut(s)	327
BstV1I	GCAGC	5 cut(s)	24, 53, 152, 690, 694
BstX2I	RGATCY	1 cut(s)	448
BstYI	RGATCY	1 cut(s)	448
BstZI	CGGCCG	1 cut(s)	6
BsuRI	GGCC	1 cut(s)	8
BtgI	CCRYGG	1 cut(s)	264
BtsCI	GGATG	1 cut(s)	369
BtsI	GCAGTG	1 cut(s)	732
BtsIMutI	CAGTG	3 cut(s)	552, 732, 744
BveI	ACCTGC	2 cut(s)	488, 750
Cac8I	GCNNGC	1 cut(s)	10
CaiI	CAGNNNCTG	1 cut(s)	684
CfoI	GCGC	1 cut(s)	271
Cfr10I	RCCGGY	1 cut(s)	8
Cfr13I	GGNCC	2 cut(s)	261, 469
CseI	GACGC	1 cut(s)	316
Csp6I	GTAC	1 cut(s)	347
CviAII	CATG	3 cut(s)	292, 319, 714
CviJI	RGCY	9 cut(s)	8, 15, 56, 309, 494, 520, 552, 667, 707
CviKI_1	RGCY	9 cut(s)	8, 15, 56, 309, 494, 520, 552, 667, 707
CviQI	GTAC	1 cut(s)	347
DdeI	CTNAG	2 cut(s)	390, 608
DinI	GGCGCC	1 cut(s)	270
DpnI	GATC	6 cut(s)	87, 162, 255, 450, 525, 644
DpnII	GATC	6 cut(s)	85, 160, 253, 448, 523, 642
EaeI	YGGCCR	1 cut(s)	6
EagI	CGGCCG	1 cut(s)	6
Eam1104I	CTCTTC	3 cut(s)	72, 274, 600
EarI	CTCTTC	3 cut(s)	72, 274, 600
EclXI	CGGCCG	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	257
Eco47I	GGWCC	2 cut(s)	261, 469
Eco52I	CGGCCG	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	281
Eco91I	GGTNACC	1 cut(s)	384
EcoO65I	GGTNACC	1 cut(s)	384
EcoRII	CCWGG	1 cut(s)	309
EcoT14I	CCWWGG	1 cut(s)	257
EgeI	GGCGCC	1 cut(s)	270
EheI	GGCGCC	1 cut(s)	270
ErhI	CCWWGG	1 cut(s)	257
FaeI	CATG	3 cut(s)	295, 322, 717
FaiI	YATR	9 cut(s)	39, 116, 131, 293, 320, 558, 657, 715, 735
FalI	AAGNNNNNCTT	2 cut(s)	404, 436
FaqI	GGGAC	2 cut(s)	168, 482
FatI	CATG	3 cut(s)	291, 318, 713
FblI	GTMKAC	1 cut(s)	579
Fnu4HI	GCNGC	8 cut(s)	6, 13, 42, 54, 166, 495, 679, 708
FokI	GGATG	1 cut(s)	376
Fsp4HI	GCNGC	8 cut(s)	6, 13, 42, 54, 166, 495, 679, 708
FspBI	CTAG	3 cut(s)	50, 452, 618
GlaI	GCGC	1 cut(s)	270
GluI	GCNGC	8 cut(s)	6, 13, 42, 54, 166, 495, 679, 708
GsuI	CTGGAG	1 cut(s)	195
HaeII	RGCGCY	1 cut(s)	272
HaeIII	GGCC	1 cut(s)	8
HapII	CCGG	1 cut(s)	9
HgaI	GACGC	1 cut(s)	316
HhaI	GCGC	1 cut(s)	271
Hin1I	GRCGYC	1 cut(s)	269
Hin1II	CATG	3 cut(s)	295, 322, 717
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HincII	GTYRAC	2 cut(s)	316, 580
HindII	GTYRAC	2 cut(s)	316, 580
HindIII	AAGCTT	1 cut(s)	518
HinfI	GANTC	6 cut(s)	59, 208, 351, 441, 538, 751
HpaII	CCGG	1 cut(s)	9
HphI	GGTGA	3 cut(s)	87, 378, 448
Hpy166II	GTNNAC	2 cut(s)	316, 580
Hpy188I	TCNGA	3 cut(s)	136, 528, 647
Hpy188III	TCNNGA	3 cut(s)	212, 251, 599
Hpy8I	GTNNAC	2 cut(s)	316, 580
HpyCH4III	ACNGT	6 cut(s)	196, 234, 265, 547, 686, 748
HpyCH4V	TGCA	6 cut(s)	41, 168, 322, 425, 678, 725
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 517, 549, 687
HpyF3I	CTNAG	2 cut(s)	390, 608
Hsp92I	GRCGYC	1 cut(s)	269
Hsp92II	CATG	3 cut(s)	295, 322, 717
HspAI	GCGC	1 cut(s)	269
KasI	GGCGCC	1 cut(s)	268
KroI	GCCGGC	1 cut(s)	8
KroNI	GCCGGC	1 cut(s)	10
Kzo9I	GATC	6 cut(s)	85, 160, 253, 448, 523, 642
LmnI	GCTCC	2 cut(s)	735, 769
Lsp1109I	GCAGC	5 cut(s)	24, 53, 152, 690, 694
LweI	GCATC	2 cut(s)	354, 699
MaeI	CTAG	3 cut(s)	50, 452, 618
MaeIII	GTNAC	3 cut(s)	190, 384, 613
MalI	GATC	6 cut(s)	87, 162, 255, 450, 525, 644
MboI	GATC	6 cut(s)	85, 160, 253, 448, 523, 642
MboII	GAAGA	6 cut(s)	59, 119, 140, 149, 291, 587
MflI	RGATCY	1 cut(s)	448
MhlI	GDGCHC	1 cut(s)	732
MluCI	AATT	5 cut(s)	123, 175, 180, 570, 672
MluI	ACGCGT	1 cut(s)	325
Mly113I	GGCGCC	1 cut(s)	269
MlyI	GAGTC	5 cut(s)	53, 202, 345, 435, 760
MmeI	TCCRAC	2 cut(s)	247, 747
MnlI	CCTC	7 cut(s)	43, 75, 275, 282, 522, 603, 749
MroNI	GCCGGC	1 cut(s)	8
MroXI	GAANNNNTTC	1 cut(s)	144
MseI	TTAA	4 cut(s)	179, 303, 516, 569
MspCI	CTTAAG	1 cut(s)	515
MspI	CCGG	1 cut(s)	9
MspR9I	CCNGG	1 cut(s)	311
MvaI	CCWGG	1 cut(s)	311
MvnI	CGCG	1 cut(s)	327
MwoI	GCNNNNNNNGC	4 cut(s)	50, 517, 549, 687
NaeI	GCCGGC	1 cut(s)	10
NarI	GGCGCC	1 cut(s)	269
NdeII	GATC	6 cut(s)	85, 160, 253, 448, 523, 642
NgoMIV	GCCGGC	1 cut(s)	8
NlaIII	CATG	3 cut(s)	295, 322, 717
NlaIV	GGNNCC	2 cut(s)	270, 470
NmuCI	GTSAC	1 cut(s)	384
NspI	RCATGY	1 cut(s)	322
PaqCI	CACCTGC	1 cut(s)	488
PdiI	GCCGGC	1 cut(s)	10
PdmI	GAANNNNTTC	1 cut(s)	144
PfeI	GAWTC	1 cut(s)	538
PkrI	GCNGC	8 cut(s)	7, 14, 43, 55, 167, 496, 680, 709
PleI	GAGTC	5 cut(s)	53, 202, 345, 435, 759
PluTI	GGCGCC	1 cut(s)	272
PpsI	GAGTC	5 cut(s)	53, 202, 345, 435, 759
Psp6I	CCWGG	1 cut(s)	309
PspEI	GGTNACC	1 cut(s)	384
PspGI	CCWGG	1 cut(s)	309
PspN4I	GGNNCC	2 cut(s)	270, 470
PspPI	GGNCC	2 cut(s)	261, 469
PstI	CTGCAG	1 cut(s)	727
PstNI	CAGNNNCTG	1 cut(s)	684
PsuI	RGATCY	1 cut(s)	448
RsaI	GTAC	1 cut(s)	348
RsaNI	GTAC	1 cut(s)	347
SalI	GTCGAC	1 cut(s)	578
SaqAI	TTAA	4 cut(s)	179, 303, 516, 569
SatI	GCNGC	8 cut(s)	6, 13, 42, 54, 166, 495, 679, 708
Sau3AI	GATC	6 cut(s)	85, 160, 253, 448, 523, 642
Sau96I	GGNCC	2 cut(s)	261, 469
SchI	GAGTC	5 cut(s)	53, 202, 345, 435, 760
ScrFI	CCNGG	1 cut(s)	311
SduI	GDGCHC	1 cut(s)	732
SetI	ASST	7 cut(s)	286, 343, 391, 422, 502, 522, 764
SfaNI	GCATC	2 cut(s)	354, 699
SfcI	CTRYAG	1 cut(s)	723
SfoI	GGCGCC	1 cut(s)	270
SinI	GGWCC	2 cut(s)	261, 469
SmlI	CTYRAG	1 cut(s)	515
SmoI	CTYRAG	1 cut(s)	515
Sse9I	AATT	5 cut(s)	123, 175, 180, 570, 672
SsiI	CCGC	3 cut(s)	5, 53, 495
SspDI	GGCGCC	1 cut(s)	268
SspMI	CTAG	3 cut(s)	50, 452, 618
StyD4I	CCNGG	1 cut(s)	309
StyI	CCWWGG	1 cut(s)	257
TaaI	ACNGT	6 cut(s)	196, 234, 265, 547, 686, 748
TaqI	TCGA	2 cut(s)	579, 754
TasI	AATT	5 cut(s)	123, 175, 180, 570, 672
TauI	GCSGC	3 cut(s)	8, 56, 497
TfiI	GAWTC	1 cut(s)	538
Tru1I	TTAA	4 cut(s)	179, 303, 516, 569
Tru9I	TTAA	4 cut(s)	179, 303, 516, 569
TscAI	CASTG	3 cut(s)	552, 732, 751
TseFI	GTSAC	1 cut(s)	384
TseI	GCWGC	5 cut(s)	12, 41, 165, 678, 707
Tsp45I	GTSAC	1 cut(s)	384
TspDTI	ATGAA	3 cut(s)	280, 672, 702
TspRI	CASTG	3 cut(s)	552, 732, 751
Vha464I	CTTAAG	1 cut(s)	515
VpaK11BI	GGWCC	2 cut(s)	261, 469
XapI	RAATTY	1 cut(s)	672
XceI	RCATGY	1 cut(s)	322
XmiI	GTMKAC	1 cut(s)	579
XmnI	GAANNNNTTC	1 cut(s)	144
XspI	CTAG	3 cut(s)	50, 452, 618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.