Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8389717.1

Orthogroup ID

OG0005184

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1026

Gene Structure 1026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8389717.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

atggtgcttccaatgctttctccctatggggactggttaatgtacaagattcacaacatgctcactgtaggaatgcttttaagatggattctgtgcacacccgtgcagttcattattggcaggaggttttatgtgggatcatatcatgctttaagacgtaggtcagctaatatggatgttcttgttgcactgggcaccaatgttgcttatttctactctgtctatatagcaatgaaagcattggctttggataattttgagggggaagatttctttgaaactagttccatgttgatatcctttatactcttggggaagtacttagaagttctagctagaggaaaaacatctgatgctttagcaaagctgacagaccttactcctgaaactgcttatctgctatcactagatgctgatggcaatgctatctcagagatggaaattagcactcaacttattcaaagaaatgatatacttaagattgttcccggggcaaaagttcctgttgatgggattgtaattagtggtcaaagccatgtgaacgagagtatgatcacaggagaggcaaggcctatttctaaaagattaggtgacaaggtaattggtggcaccatgaatgagaatggatgcttacaggttaaggcaacccatgttggttcagagactgcgctatcccagatagttcaacttgttgaagctgcacagctttccagagcacctgttcagaagctagctgatcagatctcaaagtttttcgttccagca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

255

Amino Acids

28.05

Weight (kDa)

6.43

Isoelectric Point (pI)

40.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005184)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29190 FvH4_3g29190 FvH4_3g29190 FvH4_3g29190 FvH4_3g29190
malus_domestica	MD11G1199600.v1.1
prunus_persica	Prupe.4G243400_v2.0.a1 Prupe.4G243400_v2.0.a1 Prupe.4G243400_v2.0.a1 Prupe.4G243400_v2.0.a1 Prupe.4G243400_v2.0.a1 Prupe.4G243400_v2.0.a1
pyrus_communis	pycom11g17250
rosa_chinensis	RchiOBHm_Chr5g0053501 RchiOBHm_Chr5g0053621
rosa_laevigata	RLG00000034888 RLG00000034889 RLG00000034890
rosa_multiflora	Rmu_co8389717.1_g000001 Rmu_sc0003228.1_g000003 Rmu_sc0005966.1_g000022
rosa_roxburghii	Rroxscaffold_1G00026920
rosa_rugosa	Rorug05G0280400 Rorug05G0280500
rosa_samantha	Rh5AG351600 Rh5AG352300 Rh5BG363900 Rh5CG388200 Rh5DG378500
rosa_wichuraiana	Rw5G033260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	194, 608
AclWI	GGATC	1 cut(s)	145
AfaI	GTAC	2 cut(s)	44, 320
AfiI	CCNNNNNNNGG	1 cut(s)	509
AflII	CTTAAG	1 cut(s)	476
AgsI	TTSAA	4 cut(s)	278, 461, 686, 695
AhlI	ACTAGT	1 cut(s)	281
AleI	CACNNNNGTG	1 cut(s)	101
AluBI	AGCT	7 cut(s)	167, 335, 367, 698, 706, 730, 734
AluI	AGCT	7 cut(s)	167, 335, 367, 698, 706, 730, 734
Alw21I	GWGCWC	2 cut(s)	98, 718
Alw26I	GTCTC	1 cut(s)	656
Alw44I	GTGCAC	1 cut(s)	94
AlwI	GGATC	1 cut(s)	145
AlwNI	CAGNNNCTG	1 cut(s)	665
Ama87I	CYCGRG	1 cut(s)	488
AoxI	GGCC	1 cut(s)	569
ApaLI	GTGCAC	1 cut(s)	94
ApeKI	GCWGC	1 cut(s)	698
AspLEI	GCGC	1 cut(s)	670
AsuC2I	CCSGG	2 cut(s)	489, 490
AsuHPI	GGTGA	1 cut(s)	602
AsuNHI	GCTAGC	1 cut(s)	730
AvaI	CYCGRG	1 cut(s)	488
BaeGI	GKGCMC	2 cut(s)	98, 197
BanI	GGYRCC	2 cut(s)	194, 608
Bbv12I	GWGCWC	2 cut(s)	98, 718
BbvI	GCAGC	1 cut(s)	685
BccI	CCATC	4 cut(s)	78, 410, 430, 503
BclI	TGATCA	2 cut(s)	552, 736
BcnI	CCSGG	2 cut(s)	489, 490
BcoDI	GTCTC	1 cut(s)	656
BcuI	ACTAGT	1 cut(s)	281
BfaI	CTAG	5 cut(s)	282, 332, 336, 407, 731
BfmI	CTRYAG	1 cut(s)	66
BfrI	CTTAAG	1 cut(s)	476
BglII	AGATCT	1 cut(s)	741
BisI	GCNGC	1 cut(s)	699
BlsI	GCNGC	1 cut(s)	700
BmcAI	AGTACT	1 cut(s)	320
Bme1390I	CCNGG	2 cut(s)	489, 490
BmeT110I	CYCGRG	1 cut(s)	488
BmiI	GGNNCC	2 cut(s)	196, 610
BmrFI	CCNGG	2 cut(s)	489, 490
BmrI	ACTGGG	1 cut(s)	200
BmsI	GCATC	3 cut(s)	343, 400, 617
BmtI	GCTAGC	1 cut(s)	734
BmuI	ACTGGG	1 cut(s)	200
BoxI	GACNNNNGTC	1 cut(s)	160
BpuMI	CCSGG	2 cut(s)	489, 490
BsaJI	CCNNGG	2 cut(s)	488, 489
Bsc4I	CCNNNNNNNGG	1 cut(s)	509
Bse1I	ACTGG	2 cut(s)	38, 195
Bse3DI	GCAATG	2 cut(s)	237, 427
BseDI	CCNNGG	2 cut(s)	488, 489
BseGI	GGATG	2 cut(s)	181, 632
BseLI	CCNNNNNNNGG	1 cut(s)	509
BseMI	GCAATG	2 cut(s)	237, 427
BseMII	CTCAG	1 cut(s)	444
BseNI	ACTGG	2 cut(s)	38, 195
BseSI	GKGCMC	2 cut(s)	98, 197
BseXI	GCAGC	1 cut(s)	685
BsgI	GTGCAG	2 cut(s)	125, 684
BshFI	GGCC	1 cut(s)	571
BshNI	GGYRCC	2 cut(s)	194, 608
BsiHKAI	GWGCWC	2 cut(s)	98, 718
BsiHKCI	CYCGRG	1 cut(s)	488
BsiSI	CCGG	1 cut(s)	489
BslFI	GGGAC	1 cut(s)	44
BslI	CCNNNNNNNGG	1 cut(s)	509
BsmAI	GTCTC	1 cut(s)	656
BsmFI	GGGAC	1 cut(s)	44
BsmI	GAATGC	1 cut(s)	78
BsnI	GGCC	1 cut(s)	571
BsoBI	CYCGRG	1 cut(s)	488
Bsp1286I	GDGCHC	3 cut(s)	98, 197, 718
Bsp1407I	TGTACA	1 cut(s)	42
Bsp143I	GATC	4 cut(s)	137, 552, 736, 741
BspANI	GGCC	1 cut(s)	571
BspCNI	CTCAG	1 cut(s)	443
BspLI	GGNNCC	2 cut(s)	196, 610
BspOI	GCTAGC	1 cut(s)	734
BspPI	GGATC	1 cut(s)	145
BspT107I	GGYRCC	2 cut(s)	194, 608
BspTI	CTTAAG	1 cut(s)	476
BsrDI	GCAATG	2 cut(s)	237, 427
BsrGI	TGTACA	1 cut(s)	42
BsrI	ACTGG	2 cut(s)	38, 195
BssECI	CCNNGG	2 cut(s)	488, 489
BssMI	GATC	4 cut(s)	137, 552, 736, 741
Bst4CI	ACNGT	1 cut(s)	67
BstAFI	CTTAAG	1 cut(s)	476
BstAUI	TGTACA	1 cut(s)	42
BstC8I	GCNNGC	1 cut(s)	732
BstDEI	CTNAG	2 cut(s)	322, 430
BstF5I	GGATG	2 cut(s)	181, 632
BstHHI	GCGC	1 cut(s)	670
BstKTI	GATC	4 cut(s)	140, 555, 739, 744
BstMAI	GTCTC	1 cut(s)	656
BstMBI	GATC	4 cut(s)	137, 552, 736, 741
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 236
BstNSI	RCATGY	1 cut(s)	61
BstPAI	GACNNNNGTC	1 cut(s)	160
BstSCI	CCNGG	2 cut(s)	487, 488
BstSFI	CTRYAG	1 cut(s)	66
BstSLI	GKGCMC	2 cut(s)	98, 197
BstV1I	GCAGC	1 cut(s)	685
BstX2I	RGATCY	1 cut(s)	741
BstYI	RGATCY	1 cut(s)	741
BsuRI	GGCC	1 cut(s)	571
BtsCI	GGATG	2 cut(s)	181, 632
BtsIMutI	CAGTG	2 cut(s)	63, 188
Cac8I	GCNNGC	1 cut(s)	732
CaiI	CAGNNNCTG	1 cut(s)	665
CfoI	GCGC	1 cut(s)	670
Cfr9I	CCCGGG	1 cut(s)	488
Csp6I	GTAC	2 cut(s)	43, 319
CviAII	CATG	6 cut(s)	58, 146, 289, 536, 613, 650
CviQI	GTAC	2 cut(s)	43, 319
DdeI	CTNAG	2 cut(s)	322, 430
DpnI	GATC	4 cut(s)	139, 554, 738, 743
DpnII	GATC	4 cut(s)	137, 552, 736, 741
Eco147I	AGGCCT	1 cut(s)	571
Eco32I	GATATC	1 cut(s)	297
Eco88I	CYCGRG	1 cut(s)	488
EcoRV	GATATC	1 cut(s)	297
FaeI	CATG	6 cut(s)	61, 149, 292, 539, 616, 653
FaqI	GGGAC	1 cut(s)	44
FatI	CATG	6 cut(s)	57, 145, 288, 535, 612, 649
FbaI	TGATCA	2 cut(s)	552, 736
Fnu4HI	GCNGC	1 cut(s)	699
FokI	GGATG	2 cut(s)	188, 639
Fsp4HI	GCNGC	1 cut(s)	699
FspBI	CTAG	5 cut(s)	282, 332, 336, 407, 731
GlaI	GCGC	1 cut(s)	669
GluI	GCNGC	1 cut(s)	699
HaeIII	GGCC	1 cut(s)	571
HapII	CCGG	1 cut(s)	489
HhaI	GCGC	1 cut(s)	670
Hin1II	CATG	6 cut(s)	61, 149, 292, 539, 616, 653
Hin6I	GCGC	1 cut(s)	668
HinP1I	GCGC	1 cut(s)	668
HinfI	GANTC	2 cut(s)	49, 88
HpaII	CCGG	1 cut(s)	489
HphI	GGTGA	1 cut(s)	602
Hpy166II	GTNNAC	2 cut(s)	96, 541
Hpy188I	TCNGA	5 cut(s)	352, 433, 661, 726, 741
Hpy188III	TCNNGA	2 cut(s)	383, 711
Hpy8I	GTNNAC	2 cut(s)	96, 541
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4IV	ACGT	1 cut(s)	157
HpyCH4V	TGCA	4 cut(s)	96, 106, 188, 701
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 236
HpyF3I	CTNAG	2 cut(s)	322, 430
HpySE526I	ACGT	1 cut(s)	157
Hsp92II	CATG	6 cut(s)	61, 149, 292, 539, 616, 653
HspAI	GCGC	1 cut(s)	668
Ksp22I	TGATCA	2 cut(s)	552, 736
Kzo9I	GATC	4 cut(s)	137, 552, 736, 741
Lsp1109I	GCAGC	1 cut(s)	685
LweI	GCATC	3 cut(s)	343, 400, 617
MaeI	CTAG	5 cut(s)	282, 332, 336, 407, 731
MaeII	ACGT	1 cut(s)	157
MaeIII	GTNAC	1 cut(s)	590
MalI	GATC	4 cut(s)	139, 554, 738, 743
MboI	GATC	4 cut(s)	137, 552, 736, 741
MboII	GAAGA	1 cut(s)	278
MflI	RGATCY	1 cut(s)	741
MhlI	GDGCHC	3 cut(s)	98, 197, 718
MluCI	AATT	4 cut(s)	253, 441, 519, 600
MnlI	CCTC	4 cut(s)	117, 253, 332, 556
MseI	TTAA	5 cut(s)	38, 80, 152, 477, 639
MslI	CAYNNNNRTG	1 cut(s)	101
MspCI	CTTAAG	1 cut(s)	476
MspI	CCGG	1 cut(s)	489
MspR9I	CCNGG	2 cut(s)	489, 490
Mva1269I	GAATGC	1 cut(s)	78
MwoI	GCNNNNNNNGC	2 cut(s)	13, 236
NciI	CCSGG	2 cut(s)	489, 490
NdeII	GATC	4 cut(s)	137, 552, 736, 741
NheI	GCTAGC	1 cut(s)	730
NlaIII	CATG	6 cut(s)	61, 149, 292, 539, 616, 653
NlaIV	GGNNCC	2 cut(s)	196, 610
NmuCI	GTSAC	1 cut(s)	590
NspI	RCATGY	1 cut(s)	61
OliI	CACNNNNGTG	1 cut(s)	101
PceI	AGGCCT	1 cut(s)	571
PctI	GAATGC	1 cut(s)	78
PfeI	GAWTC	2 cut(s)	49, 88
PkrI	GCNGC	1 cut(s)	700
PshAI	GACNNNNGTC	1 cut(s)	160
PspN4I	GGNNCC	2 cut(s)	196, 610
PstNI	CAGNNNCTG	1 cut(s)	665
PsuI	RGATCY	1 cut(s)	741
RsaI	GTAC	2 cut(s)	44, 320
RsaNI	GTAC	2 cut(s)	43, 319
RseI	CAYNNNNRTG	1 cut(s)	101
SaqAI	TTAA	5 cut(s)	38, 80, 152, 477, 639
SatI	GCNGC	1 cut(s)	699
Sau3AI	GATC	4 cut(s)	137, 552, 736, 741
ScaI	AGTACT	1 cut(s)	320
ScrFI	CCNGG	2 cut(s)	489, 490
SduI	GDGCHC	3 cut(s)	98, 197, 718
SfaNI	GCATC	3 cut(s)	343, 400, 617
SfcI	CTRYAG	1 cut(s)	66
SmaI	CCCGGG	1 cut(s)	490
SmiMI	CAYNNNNRTG	1 cut(s)	101
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
SpeI	ACTAGT	1 cut(s)	281
Sse9I	AATT	4 cut(s)	253, 441, 519, 600
SseBI	AGGCCT	1 cut(s)	571
SspMI	CTAG	5 cut(s)	282, 332, 336, 407, 731
StuI	AGGCCT	1 cut(s)	571
StyD4I	CCNGG	2 cut(s)	487, 488
TaaI	ACNGT	1 cut(s)	67
TaiI	ACGT	1 cut(s)	160
TasI	AATT	4 cut(s)	253, 441, 519, 600
TatI	WGTACW	2 cut(s)	42, 318
TfiI	GAWTC	2 cut(s)	49, 88
Tru1I	TTAA	5 cut(s)	38, 80, 152, 477, 639
Tru9I	TTAA	5 cut(s)	38, 80, 152, 477, 639
TscAI	CASTG	2 cut(s)	70, 195
TseFI	GTSAC	1 cut(s)	590
TseI	GCWGC	1 cut(s)	698
Tsp45I	GTSAC	1 cut(s)	590
TspDTI	ATGAA	3 cut(s)	100, 248, 629
TspMI	CCCGGG	1 cut(s)	488
TspRI	CASTG	2 cut(s)	70, 195
Vha464I	CTTAAG	1 cut(s)	476
VneI	GTGCAC	1 cut(s)	94
XceI	RCATGY	1 cut(s)	61
XmaI	CCCGGG	1 cut(s)	488
XspI	CTAG	5 cut(s)	282, 332, 336, 407, 731
ZrmI	AGTACT	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.