Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005966.1

Orthogroup ID

OG0005184

Physical Location & Seq

Genomic Coordinates Forward (+)

66942 .. 76175

Gene Structure 9234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005966.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4224 bp

atgcggaggatcgctgtggcagcgtcccttgcttggctagattggggtttggatggattgggctcgcctgcttccggcttcgtcaccttcaccgtcacgtcgtcttcatcatccgctaaaggtttgatggattcataccatttgaatggcggagtggatgctaacgggatggatgatatcaaccggcctctgttggagcccttggatgatagggccgcagataagagaattagaacacttaagttcaaaattggggaaatccactgtgcttcttgttcaactaccattgaatctgtggtgggaagccttaatggggtcaacagcgttacggtgtcacccattcatggccaagctgctatcgattatataccagagctcattaatggaagcaaaatcaaggaagccatagaagatgcaggtttcccagttgatgaatttccagaacaagacattgcagtgtgccggctcaggataaaaggaatgatgtgcaccagttgctccgagtccgttgaatctgctcttcgaatggttgatggagtgaaaaacgcagttgttggtctagcccttgaggaagcaaaggttcactttgatccaaacatcactgacacctgttcgatcatgaaagcaatggcggagtggatgctaacgggatggatgatatctaccggcctctgttggagcccttggatgttagagccgcagataagagaattagaacacttaagttcaaaattggggaaattcactgtgcttcttgttcaactaccattgaatctgtggtgggaagccttaaaggggtcaagagcgttacggtgtcacccattcatggccaagctgctatcgattatataccagagctcattaatcaaaatcaaggaagccatagaagatgcaggtgtcccagttgatgaatttccagaacaagacattgcagtatgccggctcaggataaaaggaatgatgtgcaccagttgctccgagtccgttgaatctgctcttcgaatggttgatggagtgaaaaatgcagttgttggtctagcccttgaggaagcaaaggttcactttgatccaaacatcactgacacctgttcgatcatgaaagcaatagaagatgctggctttggatctgagctcattagctcagggaatgatgtaaacaaagtgcatctaagacttgaaggagttaattctcctgaagacatgaccatcatccaatcctcccttgaatcagttgagggtgtaaataatgttgaagtggacgtgttagaaaaaaaggtcaccctcacctacgatgcagacctcactggtccaagatctcttatacattgtattgaagaagctggataccaagcaagcttgtatgttcctccaaggcgaagagaagctgaacagcagcttgagactcagatcaaaatcaaggaagccatagaagatgcaggtgtcccagttgatgaatttccagaacaagacattgcagtatgccggctcaggataaaaggaatgatgtgcaccagttgctccgagtccgttgaatctgctcttcgaatggttgatggagtgaaaaatgcagttgttggtctagcccttgaggaagcaaaggttcactttgatccaaacatcactgacacctgttcgatcatgaaagcaatagaagatgctggctttggatctgagctcattagctcagggaatgatgtaaacaaagtgcatctaagacttgaaggagttaattctcctgaagacatgaccatcatccaatcctcccttgaatcagttgagggtgtaaataatgttgaagtggacgtgttagaaaaaaaggtcaccctcacctacgatgcagacctcactggtccaagatctcttatacattgtattgaagaagctggataccaagcaagcttgtatgttcctccaaggcgaagagaagctgaacagcagcttgagactcagatgtacaggaaccagtttttcttgagctgtctattttcagttcctgtatttttattctcaatggtgcttccaatgctttctccctatggggactggttaatgtacaagattcacaacatgctcactgtaggaatgcttttaagatggattctgtgcacacccgtgcagttcattattggcaggaggttttatgtgggatcatatcatgctttaagacgtaggtcagctaatatggatgttcttgttgcactgggcaccaatgttgcttatttctactctgtctatatagcaatgaaagcattggctttggataattttgagggggaagatttctttgaaactagttccatgttgatatcctttatactcttggggaagtacttagaagttctagctagaggaaaaacatctgatgctttagcaaagctgacagaccttactcctgaaactgcttatctgctatcactagatgctgatggcaatgctatctcagagatggaaattagcactcaacttattcaaagaaatgatatacttaagattgttcccggggcaaaagttcctgttgatgggattgtaattagtggtcaaagccatgtgaacgagagtatgatcacaggagaggcaaggcctatttctaaaagattaggtgacaaggtaattggtggcaccatgaatgagaatggatgcttacaggttaaggcaacccatgttggttcagagactgcgctatcccagatagttcaacttgttgaagctgcacagctttccagagcacctgttcagaagctagctgatcagatctcaaagtttttcgttccagcagttgtgattgcagcatttctgacatggctgggttggttcatcctgggagaattcggtctttatcccatatcatggacaccaaaaggcatggataggtttgagctggcactgcagttcggcatctcagtactagtggttgcatgcccttgtgctttgggattagcaacacctacagcagtcatggttgcaacagggaagggtgctacacaaggtgttcttatcaagggtggaaatgcacttgaaaaggctcataaggtgaaaacagttgtctttgataagacagggacactgacagttggaaaaccgacagtagttagtgctgttctattttccaattactcaatggaggaattctgtactgtggctactgctgcagaggcaaatagtgaacacccaatagcaaagtctattgtggagcatgcaaaggggtttcttaacaagtttgggtcaactgaacatgtggtggaggctaaggactttgaggtacacactggagctggtgttagtggaagagttggtgacaaaatggttttggttgggaacaagaggctcatgcgggaatataatgtccaggttggtcctgaggttgagaaattcatttcagaaaatgagaaactggctcgaacatgtgtgttagtttccattgatggaaaggttgctgggtcgtttgctgtaactgatccagtgaagccagaggctgcatgtgtaatatcttatctccactcaatgggcatttcaagcatcatggttactggtgataattgggcaacagcagcagcaattgcaagggaggttggcatcgatatcgataaggtgtttgctgagaccgatcccatgggaaaagccgatagaatcaaagagttacagatgaaaggattgactgtgactatggtgggagatggaatcaatgactcaccagctttggctgcagcagatgttggcatggcaattggcgctggcaccgatgtagcaattgaagctgctgatatagttttgatgaaaagcaatttggaagatgtagttacagccatagatctctctagaaagaccatgtctcgaatttggttgaattatgtctgggccctgggatacaacatccttggcatgccagttgctgcgggaatcttgttccctttcactgggatccgattaccaccttggcttgccggtgcctgtatggctgcttcatctgttagtgtgttggcttctactcttctcgctcttgccgacactgatgagactcttgatgttcagcatgcaaccagaaatctgtcaacaaatggtgagttatcgactccggcaaagacttttgacaatcaagaagcgcatattctgggcaaggctaataacattttcgactccggcaaagaacttttgacaatccagaagcgcatattctgggcaaggctaataacatttgggttttcatccatatacttccaacaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

1407

Amino Acids

152.81

Weight (kDa)

5.06

Isoelectric Point (pI)

40.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005184)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29190 FvH4_3g29190 FvH4_3g29190 FvH4_3g29190 FvH4_3g29190
malus_domestica	MD11G1199600.v1.1
prunus_persica	Prupe.4G243400_v2.0.a1 Prupe.4G243400_v2.0.a1 Prupe.4G243400_v2.0.a1 Prupe.4G243400_v2.0.a1 Prupe.4G243400_v2.0.a1 Prupe.4G243400_v2.0.a1
pyrus_communis	pycom11g17250
rosa_chinensis	RchiOBHm_Chr5g0053501 RchiOBHm_Chr5g0053621
rosa_laevigata	RLG00000034888 RLG00000034889 RLG00000034890
rosa_multiflora	Rmu_co8389717.1_g000001 Rmu_sc0003228.1_g000003 Rmu_sc0005966.1_g000022
rosa_roxburghii	Rroxscaffold_1G00026920
rosa_rugosa	Rorug05G0280400 Rorug05G0280500
rosa_samantha	Rh5AG351600 Rh5AG352300 Rh5BG363900 Rh5CG388200 Rh5DG378500
rosa_wichuraiana	Rw5G033260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	884, 1427
Acc36I	ACCTGC	3 cut(s)	407, 884, 1427
AccB1I	GGYRCC	4 cut(s)	2204, 2618, 3734, 3944
AccB7I	CCANNNNNTGG	2 cut(s)	2847, 3502
AciI	CCGC	8 cut(s)	4, 114, 150, 216, 632, 698, 3331, 3893
AcoI	YGGCCR	2 cut(s)	346, 828
AcsI	RAATTY	8 cut(s)	434, 740, 911, 1454, 2825, 3125, 3368, 3834
AcuI	CTGAAG	2 cut(s)	1215, 1758
AdeI	CACNNNGTG	1 cut(s)	2987
AfaI	GTAC	6 cut(s)	1955, 2054, 2330, 2904, 3133, 3261
AflII	CTTAAG	3 cut(s)	239, 721, 2486
AflIII	ACRYGT	4 cut(s)	1260, 1803, 3232, 3401
AhlI	ACTAGT	2 cut(s)	2291, 2905
AjiI	CACGTC	3 cut(s)	99, 1261, 1804
AjnI	CCWGG	3 cut(s)	2817, 3345, 3858
AjuI	GAANNNNNNNTTGG	2 cut(s)	3767, 3799
AleI	CACNNNNGTG	1 cut(s)	2111
Alw21I	GWGCWC	9 cut(s)	378, 491, 860, 968, 1134, 1511, 1677, 2108, 2728
Alw26I	GTCTC	6 cut(s)	1394, 1937, 2666, 3593, 3834, 4007
Alw44I	GTGCAC	4 cut(s)	487, 964, 1507, 2104
AlwNI	CAGNNNCTG	4 cut(s)	1994, 2675, 3473, 3890
Ama87I	CYCGRG	1 cut(s)	2498
AoxI	GGCC	7 cut(s)	185, 213, 346, 667, 828, 2579, 3855
ApaI	GGGCCC	1 cut(s)	3859
ApaLI	GTGCAC	4 cut(s)	487, 964, 1507, 2104
ApoI	RAATTY	8 cut(s)	434, 740, 911, 1454, 2825, 3125, 3368, 3834
AseI	ATTAAT	2 cut(s)	381, 863
AspLEI	GCGC	4 cut(s)	2680, 3731, 4102, 4167
AspS9I	GGNCC	6 cut(s)	213, 1307, 1850, 3353, 3855, 3856
AsuC2I	CCSGG	2 cut(s)	2499, 2500
AsuII	TTCGAA	3 cut(s)	523, 1000, 1543
AsuNHI	GCTAGC	1 cut(s)	2740
AvaI	CYCGRG	1 cut(s)	2498
AvaII	GGWCC	3 cut(s)	1307, 1850, 3353
AxyI	CCTNAGG	1 cut(s)	3357
BaeGI	GKGCMC	6 cut(s)	491, 968, 1511, 2108, 2207, 3859
BalI	TGGCCA	2 cut(s)	348, 830
BamHI	GGATCC	1 cut(s)	3918
BanI	GGYRCC	4 cut(s)	2204, 2618, 3734, 3944
BanII	GRGCYC	8 cut(s)	65, 201, 378, 683, 860, 1134, 1677, 3859
BarI	GAAGNNNNNNTAC	2 cut(s)	3943, 3975
BbsI	GAAGAC	3 cut(s)	96, 1203, 1746
Bbv12I	GWGCWC	9 cut(s)	378, 491, 860, 968, 1134, 1511, 1677, 2108, 2728
BcgI	CGANNNNNNTGC	2 cut(s)	3562, 3596
BciT130I	CCWGG	3 cut(s)	2819, 3347, 3860
BciVI	GTATCC	3 cut(s)	1337, 1880, 3857
BclI	TGATCA	2 cut(s)	2562, 2746
BcnI	CCSGG	2 cut(s)	2499, 2500
BcoDI	GTCTC	6 cut(s)	1394, 1937, 2666, 3593, 3834, 4007
BcuI	ACTAGT	2 cut(s)	2291, 2905
BfmI	CTRYAG	5 cut(s)	2076, 2885, 2946, 3147, 3702
BfoI	RGCGCY	1 cut(s)	3732
BfrI	CTTAAG	3 cut(s)	239, 721, 2486
BfuAI	ACCTGC	3 cut(s)	407, 884, 1427
BfuI	GTATCC	3 cut(s)	1337, 1880, 3857
BglI	GCCNNNNNGGC	1 cut(s)	3953
BglII	AGATCT	4 cut(s)	1313, 1856, 2751, 3808
BmcAI	AGTACT	2 cut(s)	2330, 2904
Bme1390I	CCNGG	5 cut(s)	2499, 2500, 2819, 3347, 3860
Bme18I	GGWCC	3 cut(s)	1307, 1850, 3353
BmeT110I	CYCGRG	1 cut(s)	2498
BmgBI	CACGTC	3 cut(s)	99, 1261, 1804
BmgT120I	GGNCC	6 cut(s)	213, 1307, 1850, 3353, 3855, 3856
BmiI	GGNNCC	9 cut(s)	198, 680, 1961, 2206, 2620, 3736, 3857, 3920, 3946
BmrFI	CCNGG	5 cut(s)	2499, 2500, 2819, 3347, 3860
BmrI	ACTGGG	5 cut(s)	419, 896, 1439, 2210, 3924
BmtI	GCTAGC	1 cut(s)	2744
BmuI	ACTGGG	5 cut(s)	419, 896, 1439, 2210, 3924
BoxI	GACNNNNGTC	1 cut(s)	2170
BpiI	GAAGAC	3 cut(s)	96, 1203, 1746
BpmI	CTGGAG	1 cut(s)	3288
Bpu10I	CCTNAGC	6 cut(s)	467, 944, 1141, 1487, 1684, 3246
Bpu14I	TTCGAA	3 cut(s)	523, 1000, 1543
BpuEI	CTTGAG	6 cut(s)	587, 1064, 1418, 1607, 1961, 1993
BpuMI	CCSGG	2 cut(s)	2499, 2500
Bsa29I	ATCGAT	4 cut(s)	360, 842, 3576, 3582
BsaBI	GATNNNNATC	1 cut(s)	1412
BsaI	GGTCTC	1 cut(s)	3593
BsaXI	ACNNNNNCTCC	2 cut(s)	3261, 3291
Bse118I	RCCGGY	6 cut(s)	183, 462, 665, 939, 1482, 3941
Bse21I	CCTNAGG	1 cut(s)	3357
Bse3DI	GCAATG	6 cut(s)	450, 633, 927, 1470, 2247, 2437
Bse8I	GATNNNNATC	1 cut(s)	1412
BseBI	CCWGG	3 cut(s)	2819, 3347, 3860
BseCI	ATCGAT	4 cut(s)	360, 842, 3576, 3582
BseJI	GATNNNNATC	1 cut(s)	1412
BseMI	GCAATG	6 cut(s)	450, 633, 927, 1470, 2247, 2437
BseSI	GKGCMC	6 cut(s)	491, 968, 1511, 2108, 2207, 3859
BseYI	CCCAGC	2 cut(s)	2803, 3434
BsgI	GTGCAG	2 cut(s)	2135, 2694
BshFI	GGCC	7 cut(s)	187, 215, 348, 669, 830, 2581, 3857
BshNI	GGYRCC	4 cut(s)	2204, 2618, 3734, 3944
BshVI	ATCGAT	4 cut(s)	360, 842, 3576, 3582
BsiHKAI	GWGCWC	9 cut(s)	378, 491, 860, 968, 1134, 1511, 1677, 2108, 2728
BsiHKCI	CYCGRG	1 cut(s)	2498
BslFI	GGGAC	5 cut(s)	10, 884, 1427, 2054, 3073
BsmAI	GTCTC	6 cut(s)	1394, 1937, 2666, 3593, 3834, 4007
BsmFI	GGGAC	5 cut(s)	10, 884, 1427, 2054, 3073
BsmI	GAATGC	1 cut(s)	2088
BsnI	GGCC	7 cut(s)	187, 215, 348, 669, 830, 2581, 3857
Bso31I	GGTCTC	1 cut(s)	3593
BsoBI	CYCGRG	1 cut(s)	2498
Bsp119I	TTCGAA	3 cut(s)	523, 1000, 1543
Bsp120I	GGGCCC	1 cut(s)	3855
Bsp1407I	TGTACA	2 cut(s)	1953, 2052
Bsp19I	CCATGG	1 cut(s)	3609
BspACI	CCGC	8 cut(s)	4, 114, 150, 216, 632, 698, 3331, 3893
BspANI	GGCC	7 cut(s)	187, 215, 348, 669, 830, 2581, 3857
BspDI	ATCGAT	4 cut(s)	360, 842, 3576, 3582
BspHI	TCATGA	3 cut(s)	618, 1095, 1638
BspLI	GGNNCC	9 cut(s)	198, 680, 1961, 2206, 2620, 3736, 3857, 3920, 3946
BspMAI	CTGCAG	3 cut(s)	2889, 3151, 3706
BspMI	ACCTGC	3 cut(s)	407, 884, 1427
BspOI	GCTAGC	1 cut(s)	2744
BspQI	GCTCTTC	3 cut(s)	525, 1002, 1545
BspT104I	TTCGAA	3 cut(s)	523, 1000, 1543
BspT107I	GGYRCC	4 cut(s)	2204, 2618, 3734, 3944
BspTI	CTTAAG	3 cut(s)	239, 721, 2486
BspTNI	GGTCTC	1 cut(s)	3593
BsrDI	GCAATG	6 cut(s)	450, 633, 927, 1470, 2247, 2437
BsrFI	RCCGGY	6 cut(s)	183, 462, 665, 939, 1482, 3941
BsrGI	TGTACA	2 cut(s)	1953, 2052
BssAI	RCCGGY	6 cut(s)	183, 462, 665, 939, 1482, 3941
BssT1I	CCWWGG	7 cut(s)	201, 683, 1370, 1913, 3609, 3874, 3932
Bst2UI	CCWGG	3 cut(s)	2819, 3347, 3860
Bst6I	CTCTTC	7 cut(s)	525, 1002, 1372, 1545, 1915, 3280, 3993
BstAFI	CTTAAG	3 cut(s)	239, 721, 2486
BstAPI	GCANNNNNTGC	4 cut(s)	495, 972, 1515, 3557
BstAUI	TGTACA	2 cut(s)	1953, 2052
BstBI	TTCGAA	3 cut(s)	523, 1000, 1543
BstDSI	CCRYGG	1 cut(s)	3609
BstEII	GGTNACC	2 cut(s)	1276, 1819
BstH2I	RGCGCY	1 cut(s)	3732
BstHHI	GCGC	4 cut(s)	2680, 3731, 4102, 4167
BstMAI	GTCTC	6 cut(s)	1394, 1937, 2666, 3593, 3834, 4007
BstNI	CCWGG	3 cut(s)	2819, 3347, 3860
BstNSI	RCATGY	8 cut(s)	2071, 2919, 3197, 3236, 3405, 3480, 3883, 4034
BstPAI	GACNNNNGTC	1 cut(s)	2170
BstPI	GGTNACC	2 cut(s)	1276, 1819
BstSCI	CCNGG	5 cut(s)	2497, 2498, 2817, 3345, 3858
BstSFI	CTRYAG	5 cut(s)	2076, 2885, 2946, 3147, 3702
BstSLI	GKGCMC	6 cut(s)	491, 968, 1511, 2108, 2207, 3859
BstV2I	GAAGAC	3 cut(s)	96, 1203, 1746
BstX2I	RGATCY	7 cut(s)	1124, 1313, 1667, 1856, 2751, 3808, 3918
BstXI	CCANNNNNNTGG	1 cut(s)	146
BstYI	RGATCY	7 cut(s)	1124, 1313, 1667, 1856, 2751, 3808, 3918
Bsu15I	ATCGAT	4 cut(s)	360, 842, 3576, 3582
Bsu36I	CCTNAGG	1 cut(s)	3357
BsuI	GTATCC	3 cut(s)	1337, 1880, 3857
BsuRI	GGCC	7 cut(s)	187, 215, 348, 669, 830, 2581, 3857
BsuTUI	ATCGAT	4 cut(s)	360, 842, 3576, 3582
BtgI	CCRYGG	1 cut(s)	3609
BtrI	CACGTC	3 cut(s)	99, 1261, 1804
BtsI	GCAGTG	2 cut(s)	462, 2882
BveI	ACCTGC	3 cut(s)	407, 884, 1427
CaiI	CAGNNNCTG	4 cut(s)	1994, 2675, 3473, 3890
CciI	TCATGA	3 cut(s)	618, 1095, 1638
CfoI	GCGC	4 cut(s)	2680, 3731, 4102, 4167
Cfr10I	RCCGGY	6 cut(s)	183, 462, 665, 939, 1482, 3941
Cfr13I	GGNCC	6 cut(s)	213, 1307, 1850, 3353, 3855, 3856
Cfr9I	CCCGGG	1 cut(s)	2498
ClaI	ATCGAT	4 cut(s)	360, 842, 3576, 3582
CseI	GACGC	1 cut(s)	12
Csp6I	GTAC	6 cut(s)	1954, 2053, 2329, 2903, 3132, 3260
CviQI	GTAC	6 cut(s)	1954, 2053, 2329, 2903, 3132, 3260
DraIII	CACNNNGTG	1 cut(s)	2987
EaeI	YGGCCR	2 cut(s)	346, 828
Eam1104I	CTCTTC	7 cut(s)	525, 1002, 1372, 1545, 1915, 3280, 3993
EarI	CTCTTC	7 cut(s)	525, 1002, 1372, 1545, 1915, 3280, 3993
EciI	GGCGGA	2 cut(s)	165, 647
Ecl136II	GAGCTC	4 cut(s)	376, 858, 1132, 1675
Eco130I	CCWWGG	7 cut(s)	201, 683, 1370, 1913, 3609, 3874, 3932
Eco147I	AGGCCT	1 cut(s)	2581
Eco24I	GRGCYC	8 cut(s)	65, 201, 378, 683, 860, 1134, 1677, 3859
Eco31I	GGTCTC	1 cut(s)	3593
Eco32I	GATATC	4 cut(s)	178, 660, 2307, 3580
Eco47I	GGWCC	3 cut(s)	1307, 1850, 3353
Eco53kI	GAGCTC	4 cut(s)	376, 858, 1132, 1675
Eco57I	CTGAAG	2 cut(s)	1215, 1758
Eco81I	CCTNAGG	1 cut(s)	3357
Eco88I	CYCGRG	1 cut(s)	2498
Eco91I	GGTNACC	2 cut(s)	1276, 1819
EcoICRI	GAGCTC	4 cut(s)	376, 858, 1132, 1675
EcoO109I	RGGNCCY	1 cut(s)	3856
EcoO65I	GGTNACC	2 cut(s)	1276, 1819
EcoRI	GAATTC	2 cut(s)	2825, 3125
EcoRII	CCWGG	3 cut(s)	2817, 3345, 3858
EcoRV	GATATC	4 cut(s)	178, 660, 2307, 3580
EcoT14I	CCWWGG	7 cut(s)	201, 683, 1370, 1913, 3609, 3874, 3932
EcoT38I	GRGCYC	8 cut(s)	65, 201, 378, 683, 860, 1134, 1677, 3859
ErhI	CCWWGG	7 cut(s)	201, 683, 1370, 1913, 3609, 3874, 3932
FalI	AAGNNNNNCTT	8 cut(s)	569, 601, 1046, 1078, 1589, 1621, 2976, 3008
FaqI	GGGAC	5 cut(s)	10, 884, 1427, 2054, 3073
FauI	CCCGC	2 cut(s)	3324, 3886
FbaI	TGATCA	2 cut(s)	2562, 2746
FriOI	GRGCYC	8 cut(s)	65, 201, 378, 683, 860, 1134, 1677, 3859
GlaI	GCGC	4 cut(s)	2679, 3730, 4101, 4166
GsaI	CCCAGC	2 cut(s)	2807, 3438
GsuI	CTGGAG	1 cut(s)	3288
HaeII	RGCGCY	1 cut(s)	3732
HaeIII	GGCC	7 cut(s)	187, 215, 348, 669, 830, 2581, 3857
HgaI	GACGC	1 cut(s)	12
HhaI	GCGC	4 cut(s)	2680, 3731, 4102, 4167
Hin6I	GCGC	4 cut(s)	2678, 3729, 4100, 4165
HinP1I	GCGC	4 cut(s)	2678, 3729, 4100, 4165
HincII	GTYRAC	3 cut(s)	319, 3225, 4050
HindII	GTYRAC	3 cut(s)	319, 3225, 4050
HindIII	AAGCTT	2 cut(s)	1354, 1897
Hpy99I	CGWCG	1 cut(s)	103
HpyAV	CCTTC	4 cut(s)	97, 1172, 1715, 2965
HpyCH4IV	ACGT	4 cut(s)	98, 1260, 1803, 2167
HpySE526I	ACGT	4 cut(s)	98, 1260, 1803, 2167
HspAI	GCGC	4 cut(s)	2678, 3729, 4100, 4165
KroI	GCCGGC	3 cut(s)	462, 939, 1482
KroNI	GCCGGC	3 cut(s)	464, 941, 1484
Ksp22I	TGATCA	2 cut(s)	2562, 2746
LguI	GCTCTTC	3 cut(s)	525, 1002, 1545
LmnI	GCTCC	7 cut(s)	196, 503, 678, 980, 1523, 3190, 3269
MaeII	ACGT	4 cut(s)	98, 1260, 1803, 2167
MfeI	CAATTG	3 cut(s)	3555, 3723, 3747
MflI	RGATCY	7 cut(s)	1124, 1313, 1667, 1856, 2751, 3808, 3918
MlsI	TGGCCA	2 cut(s)	348, 830
MluNI	TGGCCA	2 cut(s)	348, 830
MlyI	GAGTC	9 cut(s)	512, 989, 1396, 1532, 1939, 3680, 4009, 4063, 4127
MmeI	TCCRAC	3 cut(s)	174, 656, 3052
Mox20I	TGGCCA	2 cut(s)	348, 830
MroNI	GCCGGC	3 cut(s)	462, 939, 1482
MscI	TGGCCA	2 cut(s)	348, 830
MslI	CAYNNNNRTG	3 cut(s)	144, 455, 2111
Msp20I	TGGCCA	2 cut(s)	348, 830
MspCI	CTTAAG	3 cut(s)	239, 721, 2486
MspR9I	CCNGG	5 cut(s)	2499, 2500, 2819, 3347, 3860
MunI	CAATTG	3 cut(s)	3555, 3723, 3747
Mva1269I	GAATGC	1 cut(s)	2088
MvaI	CCWGG	3 cut(s)	2819, 3347, 3860
NaeI	GCCGGC	3 cut(s)	464, 941, 1484
NciI	CCSGG	2 cut(s)	2499, 2500
NcoI	CCATGG	1 cut(s)	3609
NgoMIV	GCCGGC	3 cut(s)	462, 939, 1482
NheI	GCTAGC	1 cut(s)	2740
NlaIV	GGNNCC	9 cut(s)	198, 680, 1961, 2206, 2620, 3736, 3857, 3920, 3946
NmuCI	GTSAC	9 cut(s)	82, 94, 333, 815, 1276, 1819, 2600, 3293, 3658
NspI	RCATGY	8 cut(s)	2071, 2919, 3197, 3236, 3405, 3480, 3883, 4034
NspV	TTCGAA	3 cut(s)	523, 1000, 1543
OliI	CACNNNNGTG	1 cut(s)	2111
PaeI	GCATGC	4 cut(s)	2919, 3197, 3883, 4034
PagI	TCATGA	3 cut(s)	618, 1095, 1638
PaqCI	CACCTGC	2 cut(s)	884, 1427
PasI	CCCWGGG	1 cut(s)	3859
PceI	AGGCCT	1 cut(s)	2581
PciI	ACATGT	2 cut(s)	3232, 3401
PciSI	GCTCTTC	3 cut(s)	525, 1002, 1545
PcsI	WCGNNNNNNNCGW	1 cut(s)	3999
PctI	GAATGC	1 cut(s)	2088
PdiI	GCCGGC	3 cut(s)	464, 941, 1484
PflFI	GACNNNGTC	1 cut(s)	3826
PflMI	CCANNNNNTGG	2 cut(s)	2847, 3502
PleI	GAGTC	9 cut(s)	511, 988, 1396, 1531, 1939, 3680, 4009, 4063, 4127
PpsI	GAGTC	9 cut(s)	511, 988, 1396, 1531, 1939, 3680, 4009, 4063, 4127
PscI	ACATGT	2 cut(s)	3232, 3401
PshAI	GACNNNNGTC	1 cut(s)	2170
PshBI	ATTAAT	2 cut(s)	381, 863
Psp124BI	GAGCTC	4 cut(s)	378, 860, 1134, 1677
Psp6I	CCWGG	3 cut(s)	2817, 3345, 3858
PspEI	GGTNACC	2 cut(s)	1276, 1819
PspFI	CCCAGC	2 cut(s)	2803, 3434
PspGI	CCWGG	3 cut(s)	2817, 3345, 3858
PspN4I	GGNNCC	9 cut(s)	198, 680, 1961, 2206, 2620, 3736, 3857, 3920, 3946
PspOMI	GGGCCC	1 cut(s)	3855
PspPI	GGNCC	6 cut(s)	213, 1307, 1850, 3353, 3855, 3856
PstI	CTGCAG	3 cut(s)	2889, 3151, 3706
PstNI	CAGNNNCTG	4 cut(s)	1994, 2675, 3473, 3890
PsuI	RGATCY	7 cut(s)	1124, 1313, 1667, 1856, 2751, 3808, 3918
PsyI	GACNNNGTC	1 cut(s)	3826
RsaI	GTAC	6 cut(s)	1955, 2054, 2330, 2904, 3133, 3261
RsaNI	GTAC	6 cut(s)	1954, 2053, 2329, 2903, 3132, 3260
RseI	CAYNNNNRTG	3 cut(s)	144, 455, 2111
SacI	GAGCTC	4 cut(s)	378, 860, 1134, 1677
SapI	GCTCTTC	3 cut(s)	525, 1002, 1545
Sau96I	GGNCC	6 cut(s)	213, 1307, 1850, 3353, 3855, 3856
ScaI	AGTACT	2 cut(s)	2330, 2904
SchI	GAGTC	9 cut(s)	512, 989, 1396, 1532, 1939, 3680, 4009, 4063, 4127
ScrFI	CCNGG	5 cut(s)	2499, 2500, 2819, 3347, 3860
SfcI	CTRYAG	5 cut(s)	2076, 2885, 2946, 3147, 3702
SfuI	TTCGAA	3 cut(s)	523, 1000, 1543
SinI	GGWCC	3 cut(s)	1307, 1850, 3353
SmaI	CCCGGG	1 cut(s)	2500
SmiMI	CAYNNNNRTG	3 cut(s)	144, 455, 2111
SmlI	CTYRAG	9 cut(s)	239, 566, 721, 1043, 1397, 1586, 1940, 1972, 2486
SmoI	CTYRAG	9 cut(s)	239, 566, 721, 1043, 1397, 1586, 1940, 1972, 2486
SpeI	ACTAGT	2 cut(s)	2291, 2905
SphI	GCATGC	4 cut(s)	2919, 3197, 3883, 4034
SseBI	AGGCCT	1 cut(s)	2581
SsiI	CCGC	8 cut(s)	4, 114, 150, 216, 632, 698, 3331, 3893
SstI	GAGCTC	4 cut(s)	378, 860, 1134, 1677
StuI	AGGCCT	1 cut(s)	2581
StyD4I	CCNGG	5 cut(s)	2497, 2498, 2817, 3345, 3858
StyI	CCWWGG	7 cut(s)	201, 683, 1370, 1913, 3609, 3874, 3932
TaiI	ACGT	4 cut(s)	101, 1263, 1806, 2170
TaqII	GACCGA	2 cut(s)	2819, 3617
TatI	WGTACW	5 cut(s)	1953, 2052, 2328, 2902, 3131
TauI	GCSGC	2 cut(s)	218, 700
TseFI	GTSAC	9 cut(s)	82, 94, 333, 815, 1276, 1819, 2600, 3293, 3658
Tsp45I	GTSAC	9 cut(s)	82, 94, 333, 815, 1276, 1819, 2600, 3293, 3658
TspGWI	ACGGA	3 cut(s)	496, 973, 1516
TspMI	CCCGGG	1 cut(s)	2498
Tth111I	GACNNNGTC	1 cut(s)	3826
Van91I	CCANNNNNTGG	2 cut(s)	2847, 3502
Vha464I	CTTAAG	3 cut(s)	239, 721, 2486
VneI	GTGCAC	4 cut(s)	487, 964, 1507, 2104
VpaK11BI	GGWCC	3 cut(s)	1307, 1850, 3353
VspI	ATTAAT	2 cut(s)	381, 863
XapI	RAATTY	8 cut(s)	434, 740, 911, 1454, 2825, 3125, 3368, 3834
XbaI	TCTAGA	1 cut(s)	3815
XceI	RCATGY	8 cut(s)	2071, 2919, 3197, 3236, 3405, 3480, 3883, 4034
XcmI	CCANNNNNNNNNTGG	3 cut(s)	292, 774, 3115
XmaI	CCCGGG	1 cut(s)	2498
ZrmI	AGTACT	2 cut(s)	2330, 2904

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.