Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003228.1

Orthogroup ID

OG0005184

Physical Location & Seq

Genomic Coordinates Forward (+)

8238 .. 11713

Gene Structure 3476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003228.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

atggataggtttgagctggcactgcagttcggcatctcagtactagtggttgcatgcccttgtgctttgggattagcaacacctacagcagtcatggttgcaacagggaagggtgctacacaaggtgttcttatcaagggtggaaatgcacttgaaaaggctcataaggtgaaaacagttgtctttgataagacagggacactgacagttggaaaaccgacagtagttagtgctgttctattttccaattactcaatggaggaattctgtactgtggctactgctgcagaggcaaatagtgaacacccaatagcaaagtctattgtggagcatgcaaaggggtttcttaataagtttggatcaactgaacatgtggtggaggctaaggactttgaggtacacactggagctggtgttagtggaagagttggtgacaaaatggttttggttgggaacaagaggctcatgcgggaatataatgtccaggttggtcctgaggttgagaaattcgtttcagaaaatgagaaactggctcgaacatgtgtgttagtttccattgatggaaaggttgctgggtcgtttgctgtaactgatccagtgaagccagaggctgcatgtgtaatatcttatctccactcaatgggcatttcaagcatcatggttactggtgataatttggcaacagcagcagcaattgcaagggaggttggcatcgatatcgataaggtgtttgctgagaccgatcccatgggaaaagctgatagaatcaaagagttacagatgaaaggattgactgtgactaaggtgggagatggaatcaatgactcaccagctttggctgcagcagatgttggcatggcaattggcgctggcaccgatgtagcaatagaagctgctgatatagttttgatgaaaagcaatttggaagatgtagttacagccatagatctctctagaaagactatgtctcgaatttggttgaattatgtctgggccctgggatacaacatccttggcatgccagttgctgcgggaatcttgttccctttcactgggatccgattaccaccttggcttgccggtgcctgtatggctgcttcatctgttagtgtgattcagaaatcagaatcagatattcagatagcgagagagtacctgcctggcagcctgggtgtagtcggagactcggacagtcggactctcggactctcggagagtcggactctcggagatggagagttggagcgtcgtctcgactctcgaacggacgaagtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

425

Amino Acids

44.77

Weight (kDa)

5.26

Isoelectric Point (pI)

27.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005184)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29190 FvH4_3g29190 FvH4_3g29190 FvH4_3g29190 FvH4_3g29190
malus_domestica	MD11G1199600.v1.1
prunus_persica	Prupe.4G243400_v2.0.a1 Prupe.4G243400_v2.0.a1 Prupe.4G243400_v2.0.a1 Prupe.4G243400_v2.0.a1 Prupe.4G243400_v2.0.a1 Prupe.4G243400_v2.0.a1
pyrus_communis	pycom11g17250
rosa_chinensis	RchiOBHm_Chr5g0053501 RchiOBHm_Chr5g0053621
rosa_laevigata	RLG00000034888 RLG00000034889 RLG00000034890
rosa_multiflora	Rmu_co8389717.1_g000001 Rmu_sc0003228.1_g000003 Rmu_sc0005966.1_g000022
rosa_roxburghii	Rroxscaffold_1G00026920
rosa_rugosa	Rorug05G0280400 Rorug05G0280500
rosa_samantha	Rh5AG351600 Rh5AG352300 Rh5BG363900 Rh5CG388200 Rh5DG378500
rosa_wichuraiana	Rw5G033260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1164
AccB1I	GGYRCC	2 cut(s)	872, 1082
AccB7I	CCANNNNNTGG	1 cut(s)	640
AciI	CCGC	2 cut(s)	469, 1031
AclWI	GGATC	5 cut(s)	367, 587, 737, 1051, 1064
AcsI	RAATTY	3 cut(s)	263, 506, 972
AdeI	CACNNNGTG	1 cut(s)	125
AfaI	GTAC	4 cut(s)	42, 271, 399, 1154
AfiI	CCNNNNNNNGG	2 cut(s)	640, 1052
AflIII	ACRYGT	2 cut(s)	370, 539
AgsI	TTSAA	3 cut(s)	155, 651, 982
AhlI	ACTAGT	1 cut(s)	43
AjnI	CCWGG	4 cut(s)	483, 996, 1159, 1167
AjuI	GAANNNNNNNTTGG	2 cut(s)	905, 937
AluBI	AGCT	5 cut(s)	16, 410, 758, 833, 893
AluI	AGCT	5 cut(s)	16, 410, 758, 833, 893
Alw26I	GTCTC	4 cut(s)	731, 972, 1176, 1256
AlwI	GGATC	5 cut(s)	367, 587, 737, 1051, 1064
AlwNI	CAGNNNCTG	2 cut(s)	611, 1028
AoxI	GGCC	1 cut(s)	993
ApaI	GGGCCC	1 cut(s)	997
ApoI	RAATTY	3 cut(s)	263, 506, 972
AspLEI	GCGC	1 cut(s)	869
AspS9I	GGNCC	3 cut(s)	491, 993, 994
AsuHPI	GGTGA	4 cut(s)	181, 443, 680, 819
AvaII	GGWCC	1 cut(s)	491
AxyI	CCTNAGG	1 cut(s)	495
BaeGI	GKGCMC	1 cut(s)	997
BamHI	GGATCC	1 cut(s)	1056
BanI	GGYRCC	2 cut(s)	872, 1082
BanII	GRGCYC	1 cut(s)	997
BarI	GAAGNNNNNNTAC	2 cut(s)	1081, 1113
BccI	CCATC	3 cut(s)	554, 806, 1226
BcgI	CGANNNNNNTGC	2 cut(s)	700, 734
BciT130I	CCWGG	4 cut(s)	485, 998, 1161, 1169
BciVI	GTATCC	1 cut(s)	995
BcoDI	GTCTC	4 cut(s)	731, 972, 1176, 1256
BcuI	ACTAGT	1 cut(s)	43
BfaI	CTAG	3 cut(s)	44, 954, 1276
BfmI	CTRYAG	4 cut(s)	23, 84, 285, 840
BfoI	RGCGCY	1 cut(s)	870
BfuAI	ACCTGC	1 cut(s)	1164
BfuI	GTATCC	1 cut(s)	995
BglI	GCCNNNNNGGC	1 cut(s)	1091
BglII	AGATCT	1 cut(s)	946
BmcAI	AGTACT	1 cut(s)	42
Bme1390I	CCNGG	4 cut(s)	485, 998, 1161, 1169
Bme18I	GGWCC	1 cut(s)	491
BmgT120I	GGNCC	3 cut(s)	491, 993, 994
BmiI	GGNNCC	4 cut(s)	874, 995, 1058, 1084
BmrFI	CCNGG	4 cut(s)	485, 998, 1161, 1169
BmrI	ACTGGG	1 cut(s)	1062
BmsI	GCATC	3 cut(s)	42, 663, 720
BmuI	ACTGGG	1 cut(s)	1062
BplI	GAGNNNNNCTC	2 cut(s)	1207, 1239
BpmI	CTGGAG	1 cut(s)	426
Bpu10I	CCTNAGC	1 cut(s)	384
Bsa29I	ATCGAT	2 cut(s)	714, 720
BsaI	GGTCTC	1 cut(s)	731
BsaJI	CCNNGG	6 cut(s)	747, 996, 997, 1012, 1070, 1168
BsaXI	ACNNNNNCTCC	2 cut(s)	399, 429
Bsc4I	CCNNNNNNNGG	2 cut(s)	640, 1052
Bse118I	RCCGGY	1 cut(s)	1079
Bse1I	ACTGG	6 cut(s)	409, 534, 596, 670, 1022, 1057
Bse21I	CCTNAGG	1 cut(s)	495
BseBI	CCWGG	4 cut(s)	485, 998, 1161, 1169
BseCI	ATCGAT	2 cut(s)	714, 720
BseDI	CCNNGG	6 cut(s)	747, 996, 997, 1012, 1070, 1168
BseGI	GGATG	1 cut(s)	1008
BseLI	CCNNNNNNNGG	2 cut(s)	640, 1052
BseMII	CTCAG	3 cut(s)	51, 486, 726
BseNI	ACTGG	6 cut(s)	409, 534, 596, 670, 1022, 1057
BseSI	GKGCMC	1 cut(s)	997
BseYI	CCCAGC	1 cut(s)	572
BshFI	GGCC	1 cut(s)	995
BshNI	GGYRCC	2 cut(s)	872, 1082
BshVI	ATCGAT	2 cut(s)	714, 720
BsiSI	CCGG	1 cut(s)	1080
BslFI	GGGAC	1 cut(s)	211
BslI	CCNNNNNNNGG	2 cut(s)	640, 1052
BsmAI	GTCTC	4 cut(s)	731, 972, 1176, 1256
BsmBI	CGTCTC	1 cut(s)	1256
BsmFI	GGGAC	1 cut(s)	211
BsnI	GGCC	1 cut(s)	995
Bso31I	GGTCTC	1 cut(s)	731
Bsp120I	GGGCCC	1 cut(s)	993
Bsp1286I	GDGCHC	1 cut(s)	997
Bsp143I	GATC	5 cut(s)	359, 592, 742, 946, 1056
Bsp19I	CCATGG	1 cut(s)	747
BspACI	CCGC	2 cut(s)	469, 1031
BspANI	GGCC	1 cut(s)	995
BspCNI	CTCAG	3 cut(s)	50, 487, 727
BspDI	ATCGAT	2 cut(s)	714, 720
BspLI	GGNNCC	4 cut(s)	874, 995, 1058, 1084
BspMAI	CTGCAG	3 cut(s)	27, 289, 844
BspMI	ACCTGC	1 cut(s)	1164
BspPI	GGATC	5 cut(s)	367, 587, 737, 1051, 1064
BspT107I	GGYRCC	2 cut(s)	872, 1082
BspTNI	GGTCTC	1 cut(s)	731
BsrFI	RCCGGY	1 cut(s)	1079
BsrI	ACTGG	6 cut(s)	409, 534, 596, 670, 1022, 1057
BssAI	RCCGGY	1 cut(s)	1079
BssECI	CCNNGG	6 cut(s)	747, 996, 997, 1012, 1070, 1168
BssMI	GATC	5 cut(s)	359, 592, 742, 946, 1056
BssT1I	CCWWGG	3 cut(s)	747, 1012, 1070
Bst2UI	CCWGG	4 cut(s)	485, 998, 1161, 1169
Bst4CI	ACNGT	6 cut(s)	178, 208, 223, 274, 796, 1193
Bst6I	CTCTTC	1 cut(s)	418
BstAPI	GCANNNNNTGC	1 cut(s)	695
BstC8I	GCNNGC	6 cut(s)	18, 55, 333, 871, 1019, 1077
BstDEI	CTNAG	5 cut(s)	37, 384, 495, 735, 801
BstDSI	CCRYGG	1 cut(s)	747
BstF5I	GGATG	1 cut(s)	1008
BstH2I	RGCGCY	1 cut(s)	870
BstHHI	GCGC	1 cut(s)	869
BstKTI	GATC	5 cut(s)	362, 595, 745, 949, 1059
BstMAI	GTCTC	4 cut(s)	731, 972, 1176, 1256
BstMBI	GATC	5 cut(s)	359, 592, 742, 946, 1056
BstNI	CCWGG	4 cut(s)	485, 998, 1161, 1169
BstNSI	RCATGY	6 cut(s)	57, 335, 374, 543, 618, 1021
BstSCI	CCNGG	4 cut(s)	483, 996, 1159, 1167
BstSFI	CTRYAG	4 cut(s)	23, 84, 285, 840
BstSLI	GKGCMC	1 cut(s)	997
BstX2I	RGATCY	2 cut(s)	946, 1056
BstYI	RGATCY	2 cut(s)	946, 1056
Bsu15I	ATCGAT	2 cut(s)	714, 720
Bsu36I	CCTNAGG	1 cut(s)	495
BsuI	GTATCC	1 cut(s)	995
BsuRI	GGCC	1 cut(s)	995
BsuTUI	ATCGAT	2 cut(s)	714, 720
BtgI	CCRYGG	1 cut(s)	747
BtsCI	GGATG	1 cut(s)	1008
BtsI	GCAGTG	1 cut(s)	20
BtsIMutI	CAGTG	5 cut(s)	20, 200, 402, 603, 1050
BveI	ACCTGC	1 cut(s)	1164
Cac8I	GCNNGC	6 cut(s)	18, 55, 333, 871, 1019, 1077
CaiI	CAGNNNCTG	2 cut(s)	611, 1028
CfoI	GCGC	1 cut(s)	869
Cfr10I	RCCGGY	1 cut(s)	1079
Cfr13I	GGNCC	3 cut(s)	491, 993, 994
ClaI	ATCGAT	2 cut(s)	714, 720
CseI	GACGC	1 cut(s)	1235
Csp6I	GTAC	4 cut(s)	41, 270, 398, 1153
CviQI	GTAC	4 cut(s)	41, 270, 398, 1153
DdeI	CTNAG	5 cut(s)	37, 384, 495, 735, 801
DpnI	GATC	5 cut(s)	361, 594, 744, 948, 1058
DpnII	GATC	5 cut(s)	359, 592, 742, 946, 1056
DraIII	CACNNNGTG	1 cut(s)	125
Eam1104I	CTCTTC	1 cut(s)	418
EarI	CTCTTC	1 cut(s)	418
Eco130I	CCWWGG	3 cut(s)	747, 1012, 1070
Eco24I	GRGCYC	1 cut(s)	997
Eco31I	GGTCTC	1 cut(s)	731
Eco32I	GATATC	1 cut(s)	718
Eco47I	GGWCC	1 cut(s)	491
Eco81I	CCTNAGG	1 cut(s)	495
EcoO109I	RGGNCCY	1 cut(s)	994
EcoRI	GAATTC	1 cut(s)	263
EcoRII	CCWGG	4 cut(s)	483, 996, 1159, 1167
EcoRV	GATATC	1 cut(s)	718
EcoT14I	CCWWGG	3 cut(s)	747, 1012, 1070
EcoT38I	GRGCYC	1 cut(s)	997
ErhI	CCWWGG	3 cut(s)	747, 1012, 1070
Esp3I	CGTCTC	1 cut(s)	1256
FalI	AAGNNNNNCTT	2 cut(s)	114, 146
FaqI	GGGAC	1 cut(s)	211
FauI	CCCGC	2 cut(s)	462, 1024
FokI	GGATG	1 cut(s)	995
FriOI	GRGCYC	1 cut(s)	997
FspBI	CTAG	3 cut(s)	44, 954, 1276
GlaI	GCGC	1 cut(s)	868
GsaI	CCCAGC	1 cut(s)	576
GsuI	CTGGAG	1 cut(s)	426
HaeII	RGCGCY	1 cut(s)	870
HaeIII	GGCC	1 cut(s)	995
HapII	CCGG	1 cut(s)	1080
HgaI	GACGC	1 cut(s)	1235
HhaI	GCGC	1 cut(s)	869
Hin6I	GCGC	1 cut(s)	867
HinP1I	GCGC	1 cut(s)	867
HpaII	CCGG	1 cut(s)	1080
HphI	GGTGA	4 cut(s)	181, 443, 680, 819
Hpy166II	GTNNAC	2 cut(s)	302, 400
Hpy188III	TCNNGA	5 cut(s)	494, 954, 969, 1253, 1260
Hpy8I	GTNNAC	2 cut(s)	302, 400
Hpy99I	CGWCG	1 cut(s)	1251
HpyAV	CCTTC	1 cut(s)	103
HpyCH4III	ACNGT	6 cut(s)	178, 208, 223, 274, 796, 1193
HpyCH4V	TGCA	9 cut(s)	25, 53, 101, 149, 287, 335, 614, 698, 842
HpyF3I	CTNAG	5 cut(s)	37, 384, 495, 735, 801
HspAI	GCGC	1 cut(s)	867
Kzo9I	GATC	5 cut(s)	359, 592, 742, 946, 1056
LmnI	GCTCC	3 cut(s)	328, 407, 1243
LweI	GCATC	3 cut(s)	42, 663, 720
MaeI	CTAG	3 cut(s)	44, 954, 1276
MaeIII	GTNAC	6 cut(s)	431, 586, 661, 774, 796, 934
MalI	GATC	5 cut(s)	361, 594, 744, 948, 1058
MboI	GATC	5 cut(s)	359, 592, 742, 946, 1056
MboII	GAAGA	2 cut(s)	435, 938
MfeI	CAATTG	2 cut(s)	693, 861
MflI	RGATCY	2 cut(s)	946, 1056
MhlI	GDGCHC	1 cut(s)	997
MluCI	AATT	9 cut(s)	247, 263, 506, 673, 693, 861, 919, 972, 982
MlyI	GAGTC	7 cut(s)	818, 1178, 1192, 1200, 1216, 1225, 1250
MmeI	TCCRAC	5 cut(s)	190, 1159, 1175, 1199, 1221
MnlI	CCTC	8 cut(s)	253, 283, 373, 388, 453, 490, 601, 697
MseI	TTAA	1 cut(s)	348
MspI	CCGG	1 cut(s)	1080
MspR9I	CCNGG	4 cut(s)	485, 998, 1161, 1169
MunI	CAATTG	2 cut(s)	693, 861
MvaI	CCWGG	4 cut(s)	485, 998, 1161, 1169
NcoI	CCATGG	1 cut(s)	747
NdeII	GATC	5 cut(s)	359, 592, 742, 946, 1056
NlaIV	GGNNCC	4 cut(s)	874, 995, 1058, 1084
NmuCI	GTSAC	2 cut(s)	431, 796
NspI	RCATGY	6 cut(s)	57, 335, 374, 543, 618, 1021
PaeI	GCATGC	3 cut(s)	57, 335, 1021
PasI	CCCWGGG	1 cut(s)	997
PciI	ACATGT	2 cut(s)	370, 539
PfeI	GAWTC	5 cut(s)	765, 816, 1035, 1114, 1127
PflFI	GACNNNGTC	2 cut(s)	964, 1271
PflMI	CCANNNNNTGG	1 cut(s)	640
PleI	GAGTC	7 cut(s)	818, 1178, 1192, 1200, 1216, 1224, 1250
PpsI	GAGTC	7 cut(s)	818, 1178, 1192, 1200, 1216, 1224, 1250
PscI	ACATGT	2 cut(s)	370, 539
Psp6I	CCWGG	4 cut(s)	483, 996, 1159, 1167
PspFI	CCCAGC	1 cut(s)	572
PspGI	CCWGG	4 cut(s)	483, 996, 1159, 1167
PspN4I	GGNNCC	4 cut(s)	874, 995, 1058, 1084
PspOMI	GGGCCC	1 cut(s)	993
PspPI	GGNCC	3 cut(s)	491, 993, 994
PstI	CTGCAG	3 cut(s)	27, 289, 844
PstNI	CAGNNNCTG	2 cut(s)	611, 1028
PsuI	RGATCY	2 cut(s)	946, 1056
PsyI	GACNNNGTC	2 cut(s)	964, 1271
RsaI	GTAC	4 cut(s)	42, 271, 399, 1154
RsaNI	GTAC	4 cut(s)	41, 270, 398, 1153
SaqAI	TTAA	1 cut(s)	348
Sau3AI	GATC	5 cut(s)	359, 592, 742, 946, 1056
Sau96I	GGNCC	3 cut(s)	491, 993, 994
ScaI	AGTACT	1 cut(s)	42
SchI	GAGTC	7 cut(s)	818, 1178, 1192, 1200, 1216, 1225, 1250
ScrFI	CCNGG	4 cut(s)	485, 998, 1161, 1169
SduI	GDGCHC	1 cut(s)	997
SfaNI	GCATC	3 cut(s)	42, 663, 720
SfcI	CTRYAG	4 cut(s)	23, 84, 285, 840
SinI	GGWCC	1 cut(s)	491
SpeI	ACTAGT	1 cut(s)	43
SphI	GCATGC	3 cut(s)	57, 335, 1021
Sse9I	AATT	9 cut(s)	247, 263, 506, 673, 693, 861, 919, 972, 982
SsiI	CCGC	2 cut(s)	469, 1031
SspMI	CTAG	3 cut(s)	44, 954, 1276
StyD4I	CCNGG	4 cut(s)	483, 996, 1159, 1167
StyI	CCWWGG	3 cut(s)	747, 1012, 1070
TaaI	ACNGT	6 cut(s)	178, 208, 223, 274, 796, 1193
TaqI	TCGA	6 cut(s)	535, 714, 720, 970, 1254, 1261
TaqII	GACCGA	1 cut(s)	755
TasI	AATT	9 cut(s)	247, 263, 506, 673, 693, 861, 919, 972, 982
TatI	WGTACW	2 cut(s)	40, 269
TfiI	GAWTC	5 cut(s)	765, 816, 1035, 1114, 1127
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TscAI	CASTG	5 cut(s)	27, 207, 409, 603, 1057
TseFI	GTSAC	2 cut(s)	431, 796
Tsp45I	GTSAC	2 cut(s)	431, 796
TspDTI	ATGAA	3 cut(s)	797, 926, 1089
TspRI	CASTG	5 cut(s)	27, 207, 409, 603, 1057
Tth111I	GACNNNGTC	2 cut(s)	964, 1271
Van91I	CCANNNNNTGG	1 cut(s)	640
VpaK11BI	GGWCC	1 cut(s)	491
XapI	RAATTY	3 cut(s)	263, 506, 972
XbaI	TCTAGA	1 cut(s)	953
XceI	RCATGY	6 cut(s)	57, 335, 374, 543, 618, 1021
XcmI	CCANNNNNNNNNTGG	1 cut(s)	253
XspI	CTAG	3 cut(s)	44, 954, 1276
ZrmI	AGTACT	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.