Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8401425.1

Orthogroup ID

OG0010393

Physical Location & Seq

Genomic Coordinates Forward (+)

876 .. 1247

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8401425.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

atgagtggattccttgcgaaaggagtgatagcgttcaaccctcttcttctactcggacgttaccctttctctttcgcgccgtcacacctccctcggaatcggaatcggaatcggaatcgctccctcaccacagccaagcacttggcttcaatcgcaacgtcgtcgtttcgtcccaagatgcccggcgtcgaatctcagggaggaggactagagtggccggcacagcgcgtgcgggacaccttcctcgagttcttcagggatgagaagaaacacgagtactggaagtcaagcccggtcgtcccccacaacgacccaactcttctctttgctaatgctggttcgtcatctctcgattctcatttcgatttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004812 GO:0004813 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006412 GO:0006418 GO:0006419 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0016597 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0031406 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0036094 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

DHHA1 tRNA-synt_2c tRNA_SAD

Protein Analysis

123

Amino Acids

13.88

Weight (kDa)

10.19

Isoelectric Point (pI)

54.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50200 AT1G50200
fragaria_vesca	FvH4_4g36780 FvH4_4g36780
malus_domestica	MD13G1007000.v1.1 MD16G1000800.v1.1
prunus_persica	Prupe.1G345900_v2.0.a1
pyrus_communis	pycom13g00590 pycom16g00460
rosa_chinensis	RchiOBHm_Chr4g0446511
rosa_laevigata	RLG00000005653
rosa_multiflora	Rmu_co8401425.1_g000001 Rmu_sc0005526.1_g000002 Rmu_sc0009884.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386930
rosa_rugosa	Rorug04G0372100 Rorug04G0372200
rosa_samantha	Rh4BG442800 Rh4CG460300 Rh4DG441500
rosa_wichuraiana	Rw4G037060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	77, 228
AciI	CCGC	1 cut(s)	232
AcoI	YGGCCR	1 cut(s)	215
AcuI	CTGAAG	1 cut(s)	238
AcyI	GRCGYC	1 cut(s)	186
AfaI	GTAC	1 cut(s)	278
AgsI	TTSAA	2 cut(s)	37, 150
Ama87I	CYCGRG	1 cut(s)	245
AoxI	GGCC	1 cut(s)	215
AspLEI	GCGC	2 cut(s)	79, 228
AsuC2I	CCSGG	2 cut(s)	183, 293
AsuHPI	GGTGA	1 cut(s)	118
AvaI	CYCGRG	1 cut(s)	245
BauI	CACGAG	1 cut(s)	272
BceAI	ACGGC	1 cut(s)	64
BcgI	CGANNNNNNTGC	2 cut(s)	144, 178
BcnI	CCSGG	2 cut(s)	183, 293
BfaI	CTAG	1 cut(s)	209
BmcAI	AGTACT	1 cut(s)	278
Bme1390I	CCNGG	2 cut(s)	183, 293
BmeT110I	CYCGRG	1 cut(s)	245
BmrFI	CCNGG	2 cut(s)	183, 293
BmsI	GCATC	1 cut(s)	168
BpuMI	CCSGG	2 cut(s)	183, 293
BsaHI	GRCGYC	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	92
Bse118I	RCCGGY	1 cut(s)	217
Bse1I	ACTGG	1 cut(s)	284
BseDI	CCNNGG	1 cut(s)	92
BseGI	GGATG	1 cut(s)	265
BseMII	CTCAG	1 cut(s)	209
BseNI	ACTGG	1 cut(s)	284
BseRI	GAGGAG	1 cut(s)	216
Bsh1236I	CGCG	2 cut(s)	77, 228
Bsh1285I	CGRYCG	1 cut(s)	297
BshFI	GGCC	1 cut(s)	217
BsiEI	CGRYCG	1 cut(s)	297
BsiHKCI	CYCGRG	1 cut(s)	245
BsiSI	CCGG	3 cut(s)	183, 218, 293
BslFI	GGGAC	3 cut(s)	156, 248, 284
BsmFI	GGGAC	3 cut(s)	156, 248, 284
BsnI	GGCC	1 cut(s)	217
BsoBI	CYCGRG	1 cut(s)	245
BspACI	CCGC	1 cut(s)	232
BspANI	GGCC	1 cut(s)	217
BspCNI	CTCAG	1 cut(s)	208
BspFNI	CGCG	2 cut(s)	77, 228
BsrFI	RCCGGY	1 cut(s)	217
BsrI	ACTGG	1 cut(s)	284
BssAI	RCCGGY	1 cut(s)	217
BssECI	CCNNGG	1 cut(s)	92
BssNI	GRCGYC	1 cut(s)	186
BssSI	CACGAG	1 cut(s)	272
Bst2BI	CACGAG	1 cut(s)	272
Bst6I	CTCTTC	2 cut(s)	48, 324
BstACI	GRCGYC	1 cut(s)	186
BstC8I	GCNNGC	2 cut(s)	219, 230
BstDEI	CTNAG	1 cut(s)	195
BstF5I	GGATG	1 cut(s)	265
BstFNI	CGCG	2 cut(s)	77, 228
BstHHI	GCGC	2 cut(s)	79, 228
BstMCI	CGRYCG	1 cut(s)	297
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 223
BstSCI	CCNGG	2 cut(s)	181, 291
BstUI	CGCG	2 cut(s)	77, 228
BstXI	CCANNNNNNTGG	1 cut(s)	142
BsuRI	GGCC	1 cut(s)	217
BtsCI	GGATG	1 cut(s)	265
Cac8I	GCNNGC	2 cut(s)	219, 230
CfoI	GCGC	2 cut(s)	79, 228
Cfr10I	RCCGGY	1 cut(s)	217
CseI	GACGC	1 cut(s)	175
Csp6I	GTAC	1 cut(s)	277
CviJI	RGCY	4 cut(s)	134, 146, 217, 291
CviKI_1	RGCY	4 cut(s)	134, 146, 217, 291
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	1 cut(s)	195
EaeI	YGGCCR	1 cut(s)	215
Eam1104I	CTCTTC	2 cut(s)	48, 324
EarI	CTCTTC	2 cut(s)	48, 324
Eco57I	CTGAAG	1 cut(s)	238
Eco88I	CYCGRG	1 cut(s)	245
FaqI	GGGAC	3 cut(s)	156, 248, 284
FauI	CCCGC	1 cut(s)	225
FokI	GGATG	1 cut(s)	272
FspBI	CTAG	1 cut(s)	209
GlaI	GCGC	2 cut(s)	78, 227
HaeIII	GGCC	1 cut(s)	217
HapII	CCGG	3 cut(s)	183, 218, 293
HgaI	GACGC	1 cut(s)	175
HhaI	GCGC	2 cut(s)	79, 228
Hin1I	GRCGYC	1 cut(s)	186
Hin6I	GCGC	2 cut(s)	77, 226
HinP1I	GCGC	2 cut(s)	77, 226
HinfI	GANTC	7 cut(s)	9, 97, 103, 109, 115, 191, 353
HpaII	CCGG	3 cut(s)	183, 218, 293
HphI	GGTGA	1 cut(s)	118
Hpy188I	TCNGA	5 cut(s)	56, 96, 102, 108, 114
Hpy188III	TCNNGA	1 cut(s)	350
Hpy99I	CGWCG	3 cut(s)	163, 166, 191
HpyAV	CCTTC	1 cut(s)	250
HpyCH4IV	ACGT	2 cut(s)	58, 158
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 223
HpyF3I	CTNAG	1 cut(s)	195
HpySE526I	ACGT	2 cut(s)	58, 158
Hsp92I	GRCGYC	1 cut(s)	186
HspAI	GCGC	2 cut(s)	77, 226
KroI	GCCGGC	1 cut(s)	217
KroNI	GCCGGC	1 cut(s)	219
LmnI	GCTCC	1 cut(s)	125
LpnPI	CCDG	7 cut(s)	182, 196, 231, 241, 265, 306, 321
LweI	GCATC	1 cut(s)	168
MaeI	CTAG	1 cut(s)	209
MaeII	ACGT	2 cut(s)	58, 158
MaeIII	GTNAC	2 cut(s)	59, 81
MboII	GAAGA	5 cut(s)	35, 38, 244, 277, 311
MnlI	CCTC	7 cut(s)	51, 98, 102, 134, 194, 197, 254
MroNI	GCCGGC	1 cut(s)	217
MspI	CCGG	3 cut(s)	183, 218, 293
MspR9I	CCNGG	2 cut(s)	183, 293
MvnI	CGCG	2 cut(s)	77, 228
MwoI	GCNNNNNNNGC	2 cut(s)	152, 223
NaeI	GCCGGC	1 cut(s)	219
NciI	CCSGG	2 cut(s)	183, 293
NgoMIV	GCCGGC	1 cut(s)	217
NmuCI	GTSAC	1 cut(s)	81
PaeR7I	CTCGAG	1 cut(s)	245
PdiI	GCCGGC	1 cut(s)	219
PfeI	GAWTC	7 cut(s)	9, 97, 103, 109, 115, 191, 353
PspXI	VCTCGAGB	1 cut(s)	245
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
ScaI	AGTACT	1 cut(s)	278
ScrFI	CCNGG	2 cut(s)	183, 293
SetI	ASST	4 cut(s)	61, 90, 161, 242
SfaNI	GCATC	1 cut(s)	168
Sfr274I	CTCGAG	1 cut(s)	245
SlaI	CTCGAG	1 cut(s)	245
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
SsiI	CCGC	1 cut(s)	232
SspMI	CTAG	1 cut(s)	209
StyD4I	CCNGG	2 cut(s)	181, 291
TaiI	ACGT	2 cut(s)	61, 161
TaqI	TCGA	4 cut(s)	189, 246, 351, 363
TatI	WGTACW	1 cut(s)	276
TfiI	GAWTC	7 cut(s)	9, 97, 103, 109, 115, 191, 353
TseFI	GTSAC	1 cut(s)	81
Tsp45I	GTSAC	1 cut(s)	81
XhoI	CTCGAG	1 cut(s)	245
XspI	CTAG	1 cut(s)	209
ZrmI	AGTACT	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.