Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0010393

Physical Location & Seq

Genomic Coordinates Reverse (-)

54340995 .. 54342178

Gene Structure 1184 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0372100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGAAGATTGCAACGTGCTCGCGGCGGATTGCGTTGTGATCTCGTGCTGCTGCCAATGCTTGATCCTCCAAATCACCATCTTCATCTTCTTCAAGCTTCCTTGCAAGTTGATCAGAAAGACGAGGGAGTACACCATGAAGAAGCTTCAACAAAGAAGGAGAAAAGGGATTGTTGTGGAAAGCAAAACAGTATATCAATGTGAAAACGACATTGAGAGTATTCGAGAATCAATGAGATCTATGGAGGATATCCACAGTTGCAGAAGTTGCATAGAGGAGGTCGACAAGGTTCTAGAGGAGCTGTATCAGAGAGGAGAGTTTGGATTTGGAAGCTTTTGGGGGGGAGGAGAACTGGGTTTTTCCTCAACTCATCATTTAGGAAGAGATGATCAATTTGACCCTAGTTTCGTACGCTATCAATTGATTGAAATGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004812 GO:0004813 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006412 GO:0006418 GO:0006419 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0016597 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0031406 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0036094 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

DHHA1 tRNA-synt_2c tRNA_SAD

Protein Analysis

145

Amino Acids

16.93

Weight (kDa)

5.66

Isoelectric Point (pI)

51.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50200 AT1G50200
fragaria_vesca	FvH4_4g36780 FvH4_4g36780
malus_domestica	MD13G1007000.v1.1 MD16G1000800.v1.1
prunus_persica	Prupe.1G345900_v2.0.a1
pyrus_communis	pycom13g00590 pycom16g00460
rosa_chinensis	RchiOBHm_Chr4g0446511
rosa_laevigata	RLG00000005653
rosa_multiflora	Rmu_co8401425.1_g000001 Rmu_sc0005526.1_g000002 Rmu_sc0009884.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386930
rosa_rugosa	Rorug04G0372100 Rorug04G0372200
rosa_samantha	Rh4BG442800 Rh4CG460300 Rh4DG441500
rosa_wichuraiana	Rw4G037060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	282
AccII	CGCG	1 cut(s)	23
AciI	CCGC	2 cut(s)	23, 26
AclWI	GGATC	1 cut(s)	58
AfaI	GTAC	2 cut(s)	131, 411
AgsI	TTSAA	3 cut(s)	94, 149, 428
AluBI	AGCT	4 cut(s)	97, 145, 301, 333
AluI	AGCT	4 cut(s)	97, 145, 301, 333
Alw21I	GWGCWC	1 cut(s)	21
AlwI	GGATC	1 cut(s)	58
ApeKI	GCWGC	2 cut(s)	48, 51
ArsI	GACNNNNNNTTYG	2 cut(s)	389, 421
AsuHPI	GGTGA	1 cut(s)	67
BauI	CACGAG	1 cut(s)	43
Bbv12I	GWGCWC	1 cut(s)	21
BbvI	GCAGC	2 cut(s)	35, 38
BccI	CCATC	1 cut(s)	86
BcgI	CGANNNNNNTGC	1 cut(s)	35
BclI	TGATCA	2 cut(s)	111, 388
BfaI	CTAG	2 cut(s)	293, 402
BglII	AGATCT	1 cut(s)	236
BisI	GCNGC	3 cut(s)	24, 49, 52
BlsI	GCNGC	3 cut(s)	25, 50, 53
BmrI	ACTGGG	1 cut(s)	362
BmuI	ACTGGG	1 cut(s)	362
Bse1I	ACTGG	1 cut(s)	357
BseNI	ACTGG	1 cut(s)	357
BseRI	GAGGAG	4 cut(s)	290, 311, 327, 360
BseXI	GCAGC	2 cut(s)	35, 38
Bsh1236I	CGCG	1 cut(s)	23
BsiHKAI	GWGCWC	1 cut(s)	21
BsiWI	CGTACG	1 cut(s)	409
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	5 cut(s)	39, 63, 111, 236, 388
BspACI	CCGC	2 cut(s)	23, 26
BspFNI	CGCG	1 cut(s)	23
BspPI	GGATC	1 cut(s)	58
BsrI	ACTGG	1 cut(s)	357
BssMI	GATC	5 cut(s)	39, 63, 111, 236, 388
BssSI	CACGAG	1 cut(s)	43
Bst2BI	CACGAG	1 cut(s)	43
Bst4CI	ACNGT	2 cut(s)	190, 257
Bst6I	CTCTTC	1 cut(s)	376
BstAPI	GCANNNNNTGC	1 cut(s)	267
BstC8I	GCNNGC	1 cut(s)	21
BstFNI	CGCG	1 cut(s)	23
BstKTI	GATC	5 cut(s)	42, 66, 114, 239, 391
BstMBI	GATC	5 cut(s)	39, 63, 111, 236, 388
BstMWI	GCNNNNNNNGC	2 cut(s)	57, 267
BstUI	CGCG	1 cut(s)	23
BstV1I	GCAGC	2 cut(s)	35, 38
BstX2I	RGATCY	1 cut(s)	236
BstYI	RGATCY	1 cut(s)	236
Cac8I	GCNNGC	1 cut(s)	21
Csp6I	GTAC	2 cut(s)	130, 410
CviAII	CATG	1 cut(s)	136
CviJI	RGCY	4 cut(s)	97, 145, 301, 333
CviKI_1	RGCY	4 cut(s)	97, 145, 301, 333
CviQI	GTAC	2 cut(s)	130, 410
DpnI	GATC	5 cut(s)	41, 65, 113, 238, 390
DpnII	GATC	5 cut(s)	39, 63, 111, 236, 388
Eam1104I	CTCTTC	1 cut(s)	376
EarI	CTCTTC	1 cut(s)	376
EciI	GGCGGA	1 cut(s)	41
Eco32I	GATATC	1 cut(s)	250
EcoRV	GATATC	1 cut(s)	250
FaeI	CATG	1 cut(s)	139
FaiI	YATR	4 cut(s)	137, 193, 242, 272
FatI	CATG	1 cut(s)	135
FbaI	TGATCA	2 cut(s)	111, 388
FblI	GTMKAC	1 cut(s)	282
Fnu4HI	GCNGC	3 cut(s)	24, 49, 52
Fsp4HI	GCNGC	3 cut(s)	24, 49, 52
FspBI	CTAG	2 cut(s)	293, 402
GluI	GCNGC	3 cut(s)	24, 49, 52
Hin1II	CATG	1 cut(s)	139
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HindIII	AAGCTT	3 cut(s)	95, 143, 331
HinfI	GANTC	1 cut(s)	227
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	2 cut(s)	132, 283
Hpy188I	TCNGA	2 cut(s)	116, 309
Hpy188III	TCNNGA	2 cut(s)	224, 293
Hpy8I	GTNNAC	2 cut(s)	132, 283
HpyAV	CCTTC	1 cut(s)	150
HpyCH4III	ACNGT	2 cut(s)	190, 257
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	4 cut(s)	12, 105, 261, 270
HpyF10VI	GCNNNNNNNGC	2 cut(s)	57, 267
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	1 cut(s)	139
Ksp22I	TGATCA	2 cut(s)	111, 388
Kzo9I	GATC	5 cut(s)	39, 63, 111, 236, 388
LmnI	GCTCC	1 cut(s)	298
LpnPI	CCDG	1 cut(s)	338
Lsp1109I	GCAGC	2 cut(s)	35, 38
MaeI	CTAG	2 cut(s)	293, 402
MaeII	ACGT	1 cut(s)	15
MalI	GATC	5 cut(s)	41, 65, 113, 238, 390
MboI	GATC	5 cut(s)	39, 63, 111, 236, 388
MboII	GAAGA	6 cut(s)	17, 73, 79, 82, 151, 393
MfeI	CAATTG	1 cut(s)	419
MflI	RGATCY	1 cut(s)	236
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	2 cut(s)	392, 419
MnlI	CCTC	9 cut(s)	77, 117, 238, 268, 271, 289, 305, 338, 373
MunI	CAATTG	1 cut(s)	419
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	2 cut(s)	57, 267
NdeII	GATC	5 cut(s)	39, 63, 111, 236, 388
NlaIII	CATG	1 cut(s)	139
PfeI	GAWTC	1 cut(s)	227
Pfl23II	CGTACG	1 cut(s)	409
PkrI	GCNGC	3 cut(s)	25, 50, 53
PspLI	CGTACG	1 cut(s)	409
PsuI	RGATCY	1 cut(s)	236
RsaI	GTAC	2 cut(s)	131, 411
RsaNI	GTAC	2 cut(s)	130, 410
SalI	GTCGAC	1 cut(s)	281
SatI	GCNGC	3 cut(s)	24, 49, 52
Sau3AI	GATC	5 cut(s)	39, 63, 111, 236, 388
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	7 cut(s)	18, 99, 147, 282, 291, 303, 335
Sse9I	AATT	2 cut(s)	392, 419
SsiI	CCGC	2 cut(s)	23, 26
SspMI	CTAG	2 cut(s)	293, 402
TaaI	ACNGT	2 cut(s)	190, 257
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	2 cut(s)	223, 282
TasI	AATT	2 cut(s)	392, 419
TatI	WGTACW	1 cut(s)	129
TauI	GCSGC	1 cut(s)	26
TfiI	GAWTC	1 cut(s)	227
TseI	GCWGC	2 cut(s)	48, 51
TspDTI	ATGAA	2 cut(s)	73, 152
XbaI	TCTAGA	1 cut(s)	292
XmiI	GTMKAC	1 cut(s)	282
XspI	CTAG	2 cut(s)	293, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.