Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8408199.1

Orthogroup ID

OG0001492

Physical Location & Seq

Genomic Coordinates Forward (+)

286 .. 936

Gene Structure 651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8408199.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atggcagcagctgctgagctcttcttgtctggtgggggaggaggaaccaccgctctgtccaaaaccctatctcttgtttcttccccatttcccaaatcaattcttcatcttctccgcacctctccctcctccccttccctttccctccaccaccaccaccacgcttctcgtcttcctctccgcttgctctccgccactgatcatctcgacgtttccctaacagacgacgacgacgaagaacaagaactagaaccagaaccagaagcagagggagatgagtccgacgtcgatttggacctcgacgccctcgaacaagacgcccttctcgccgtccgagacttctcttcatctctctccaaccagctcacaatcgaagatgagaaaactgatcaagaggcactcggccgaaagcagaggaggcagaaaactccaatcaaaactaaaactgtaagtaagcaaatgatggtgctatcctgctcagattatattttactgctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_dom-like MMR_HSR1

Protein Analysis

166

Amino Acids

18.12

Weight (kDa)

4.72

Isoelectric Point (pI)

61.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12080 AT3G12080
fragaria_vesca	FvH4_1g30400 FvH4_1g30400 FvH4_1g30400 FvH4_1g30400 FvH4_1g30400 FvH4_1g30400 FvH4_1g30400 FvH4_1g30400 FvH4_1g30400 FvH4_1g30400 FvH4_1g30400 FvH4_1g30400 FvH4_1g30400 FvH4_1g30400 FvH4_1g30400 FvH4_1g30400 FvH4_1g30400 FvH4_1g30400 FvH4_1g30400 FvH4_1g30400 FvH4_1g30400 FvH4_1g30400 FvH4_1g30400 FvH4_1g30400 FvH4_1g30400 FvH4_1g30400 FvH4_1g30400 FvH4_1g30400 FvH4_1g30400 FvH4_1g30400 FvH4_1g30400 FvH4_1g30400
malus_domestica	MD03G1176500.v1.1 MD11G1197100.v1.1
prunus_persica	Prupe.4G247300_v2.0.a1
pyrus_communis	pycom03g13380 pycom11g16990
rosa_chinensis	RchiOBHm_Chr3g0490621
rosa_laevigata	RLG00000022879
rosa_multiflora	Rmu_co8408199.1_g000001 Rmu_sc0003456.1_g000004 Rmu_sc0007326.1_g000005
rosa_roxburghii	Rroxscaffold_6G00393360
rosa_rugosa	Rorug03G0244800 Rorug04G0071000
rosa_samantha	Rh3AG294100 Rh3BG330300 Rh3DG327200
rosa_wichuraiana	Rw3G026010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	288
AccBSI	CCGCTC	1 cut(s)	53
AciI	CCGC	4 cut(s)	51, 115, 181, 192
AcoI	YGGCCR	1 cut(s)	403
AcyI	GRCGYC	3 cut(s)	285, 303, 318
AluBI	AGCT	3 cut(s)	11, 19, 364
AluI	AGCT	3 cut(s)	11, 19, 364
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	1 cut(s)	330
AlwNI	CAGNNNCTG	2 cut(s)	11, 14
AoxI	GGCC	1 cut(s)	403
ApeKI	GCWGC	3 cut(s)	5, 8, 11
AspS9I	GGNCC	1 cut(s)	295
AvaII	GGWCC	1 cut(s)	295
BanII	GRGCYC	1 cut(s)	21
BbsI	GAAGAC	1 cut(s)	164
Bbv12I	GWGCWC	1 cut(s)	21
BbvI	GCAGC	2 cut(s)	17, 20
BccI	CCATC	1 cut(s)	457
BceAI	ACGGC	1 cut(s)	314
BclI	TGATCA	2 cut(s)	199, 388
BcoDI	GTCTC	1 cut(s)	330
BfaI	CTAG	1 cut(s)	248
BisI	GCNGC	3 cut(s)	6, 9, 12
BlpI	GCTNAGC	1 cut(s)	15
BlsI	GCNGC	3 cut(s)	7, 10, 13
Bme18I	GGWCC	1 cut(s)	295
BmgT120I	GGNCC	1 cut(s)	295
BmiI	GGNNCC	1 cut(s)	46
BpiI	GAAGAC	1 cut(s)	164
Bpu1102I	GCTNAGC	1 cut(s)	15
BsaHI	GRCGYC	3 cut(s)	285, 303, 318
BseMII	CTCAG	2 cut(s)	6, 492
BseRI	GAGGAG	3 cut(s)	54, 118, 430
BseX3I	CGGCCG	1 cut(s)	403
BseXI	GCAGC	2 cut(s)	17, 20
Bsh1285I	CGRYCG	1 cut(s)	406
BshFI	GGCC	1 cut(s)	405
BsiEI	CGRYCG	1 cut(s)	406
BsiHKAI	GWGCWC	1 cut(s)	21
BsmAI	GTCTC	1 cut(s)	330
BsnI	GGCC	1 cut(s)	405
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	2 cut(s)	199, 388
Bsp1720I	GCTNAGC	1 cut(s)	15
BspACI	CCGC	4 cut(s)	51, 115, 181, 192
BspANI	GGCC	1 cut(s)	405
BspCNI	CTCAG	2 cut(s)	7, 491
BspLI	GGNNCC	1 cut(s)	46
BspQI	GCTCTTC	1 cut(s)	26
BsrBI	CCGCTC	1 cut(s)	53
BssMI	GATC	2 cut(s)	199, 388
BssNI	GRCGYC	3 cut(s)	285, 303, 318
Bst4CI	ACNGT	1 cut(s)	448
Bst6I	CTCTTC	2 cut(s)	26, 349
BstACI	GRCGYC	3 cut(s)	285, 303, 318
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	185
BstDEI	CTNAG	2 cut(s)	15, 478
BstKTI	GATC	2 cut(s)	202, 391
BstMAI	GTCTC	1 cut(s)	330
BstMBI	GATC	2 cut(s)	199, 388
BstMCI	CGRYCG	1 cut(s)	406
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 326, 418
BstV1I	GCAGC	2 cut(s)	17, 20
BstV2I	GAAGAC	1 cut(s)	164
BstZI	CGGCCG	1 cut(s)	403
BsuRI	GGCC	1 cut(s)	405
BtsIMutI	CAGTG	1 cut(s)	195
Cac8I	GCNNGC	1 cut(s)	185
CaiI	CAGNNNCTG	2 cut(s)	11, 14
Cfr13I	GGNCC	1 cut(s)	295
CseI	GACGC	2 cut(s)	311, 326
CviJI	RGCY	4 cut(s)	11, 19, 364, 405
CviKI_1	RGCY	4 cut(s)	11, 19, 364, 405
DdeI	CTNAG	2 cut(s)	15, 478
DpnI	GATC	2 cut(s)	201, 390
DpnII	GATC	2 cut(s)	199, 388
EaeI	YGGCCR	1 cut(s)	403
EagI	CGGCCG	1 cut(s)	403
Eam1104I	CTCTTC	2 cut(s)	26, 349
EarI	CTCTTC	2 cut(s)	26, 349
EciI	GGCGGA	1 cut(s)	181
Ecl136II	GAGCTC	1 cut(s)	19
EclXI	CGGCCG	1 cut(s)	403
Eco24I	GRGCYC	1 cut(s)	21
Eco47I	GGWCC	1 cut(s)	295
Eco52I	CGGCCG	1 cut(s)	403
Eco53kI	GAGCTC	1 cut(s)	19
EcoICRI	GAGCTC	1 cut(s)	19
EcoT38I	GRGCYC	1 cut(s)	21
FaiI	YATR	1 cut(s)	486
FalI	AAGNNNNNCTT	2 cut(s)	306, 338
FbaI	TGATCA	2 cut(s)	199, 388
Fnu4HI	GCNGC	3 cut(s)	6, 9, 12
FriOI	GRGCYC	1 cut(s)	21
Fsp4HI	GCNGC	3 cut(s)	6, 9, 12
FspBI	CTAG	1 cut(s)	248
GluI	GCNGC	3 cut(s)	6, 9, 12
HaeIII	GGCC	1 cut(s)	405
HgaI	GACGC	2 cut(s)	311, 326
Hin1I	GRCGYC	3 cut(s)	285, 303, 318
HinfI	GANTC	1 cut(s)	278
Hpy188I	TCNGA	3 cut(s)	283, 335, 481
Hpy188III	TCNNGA	2 cut(s)	206, 392
Hpy99I	CGWCG	7 cut(s)	212, 230, 233, 236, 287, 290, 305
HpyAV	CCTTC	2 cut(s)	144, 332
HpyCH4III	ACNGT	1 cut(s)	448
HpyCH4IV	ACGT	2 cut(s)	210, 285
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 326, 418
HpyF3I	CTNAG	2 cut(s)	15, 478
HpySE526I	ACGT	2 cut(s)	210, 285
Hsp92I	GRCGYC	3 cut(s)	285, 303, 318
Ksp22I	TGATCA	2 cut(s)	199, 388
Kzo9I	GATC	2 cut(s)	199, 388
LguI	GCTCTTC	1 cut(s)	26
LpnPI	CCDG	5 cut(s)	15, 267, 273, 374, 487
Lsp1109I	GCAGC	2 cut(s)	17, 20
MaeI	CTAG	1 cut(s)	248
MaeII	ACGT	2 cut(s)	210, 285
MalI	GATC	2 cut(s)	201, 390
MbiI	CCGCTC	1 cut(s)	53
MboI	GATC	2 cut(s)	199, 388
MboII	GAAGA	8 cut(s)	13, 72, 95, 101, 164, 248, 336, 386
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	1 cut(s)	99
MlyI	GAGTC	1 cut(s)	287
MmeI	TCCRAC	2 cut(s)	306, 381
MspA1I	CMGCKG	1 cut(s)	11
MwoI	GCNNNNNNNGC	3 cut(s)	11, 326, 418
NdeII	GATC	2 cut(s)	199, 388
NlaIV	GGNNCC	1 cut(s)	46
NmeAIII	GCCGAG	1 cut(s)	381
PciSI	GCTCTTC	1 cut(s)	26
PcsI	WCGNNNNNNNCGW	2 cut(s)	231, 306
PkrI	GCNGC	3 cut(s)	7, 10, 13
PleI	GAGTC	1 cut(s)	286
PpsI	GAGTC	1 cut(s)	286
Psp124BI	GAGCTC	1 cut(s)	21
PspN4I	GGNNCC	1 cut(s)	46
PspPI	GGNCC	1 cut(s)	295
PstNI	CAGNNNCTG	2 cut(s)	11, 14
PvuII	CAGCTG	1 cut(s)	11
SacI	GAGCTC	1 cut(s)	21
SapI	GCTCTTC	1 cut(s)	26
SatI	GCNGC	3 cut(s)	6, 9, 12
Sau3AI	GATC	2 cut(s)	199, 388
Sau96I	GGNCC	1 cut(s)	295
SchI	GAGTC	1 cut(s)	287
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	7 cut(s)	13, 21, 122, 213, 288, 300, 366
SinI	GGWCC	1 cut(s)	295
Sse9I	AATT	1 cut(s)	99
SsiI	CCGC	4 cut(s)	51, 115, 181, 192
SspMI	CTAG	1 cut(s)	248
SstI	GAGCTC	1 cut(s)	21
TaaI	ACNGT	1 cut(s)	448
TaiI	ACGT	2 cut(s)	213, 288
TaqI	TCGA	5 cut(s)	207, 288, 300, 309, 372
TasI	AATT	1 cut(s)	99
TscAI	CASTG	1 cut(s)	202
TseI	GCWGC	3 cut(s)	5, 8, 11
TspDTI	ATGAA	2 cut(s)	95, 336
TspRI	CASTG	1 cut(s)	202
VpaK11BI	GGWCC	1 cut(s)	295
XspI	CTAG	1 cut(s)	248
ZraI	GACGTC	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.