Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000071.1

Orthogroup ID

OG0006332

Physical Location & Seq

Genomic Coordinates Forward (+)

23111 .. 25226

Gene Structure 2116 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

atgagcaacaacgttaaccagttcggcgacacgacattgaccaaagtcttcgtcggagggctggcctgggagactcccaaggaggctctgagagagcacttcgacaagtacggtgagatcttggaggccgtcatcatctccgataagctcacaggccgatccaagggctacggcttcgtgacgttcaaggaggctgaagcggctaagaaggcttgcgaggacgccacaccggtcatcaacagccgccgtgccaactgcaacctggcctcgctcggggctcgccgccctaggtcggcttccaccaccactcctcctcctcaacgagtatcaaatggtggaggaccaaggtctatgtcgccggcgccggcgccggcacctgcaaatcacgtgcaatggtactacccggcagggactccagcagcagcttctgtaccattccatcaccagcatcatcaggctgttccattctatggatactccccaacctacattgcaactgatatgggctacaatcacaagctgggatacagtactggtgggagttacatgaatgggcattactctcctcaagtgtaccatagccaccagcctatggttggtccaaacacattgatgccaatgtaccctctttaccattatcaccatcaatcacatacaatggggttacctgcccaattcttccccccaaccaccgcaggtcacgtcgcaacggtcccggcaatcatgtcaaaaccggcctcaattgctcccaataacacagtgtgcttggctgtggaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010029 GO:0010033 GO:0010035 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0097159 GO:0097305 GO:1900140 GO:1901363 GO:1901700 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

259

Amino Acids

28.07

Weight (kDa)

9.04

Isoelectric Point (pI)

60.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	16 - 73	3.5e-17	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54770 AT3G54770 AT3G54770
fragaria_vesca	FvH4_7g20260 FvH4_7g20260 FvH4_7g20260 FvH4_7g20260
malus_domestica	MD01G1112300.v1.1 MD07G1180100.v1.1
prunus_persica	Prupe.2G219600_v2.0.a1 Prupe.2G219600_v2.0.a1 Prupe.2G219600_v2.0.a1
pyrus_communis	pycom01g14080 pycom07g17340
rosa_chinensis	RchiOBHm_Chr1g0364201
rosa_laevigata	RLG00000027506
rosa_multiflora	Rmu_sc0000071.1_g000004
rosa_roxburghii	Rroxscaffold_4G00292570
rosa_rugosa	Rorug01G0314600.1 Rorug01G0314700 Rorug01G0314700 Rorug01G0314800
rosa_samantha	Rh1AG322100 Rh1BG284900 Rh1CG301400 Rh1DG316300
rosa_wichuraiana	Rw1G028530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	385
Acc36I	ACCTGC	3 cut(s)	385, 676, 686
AccB1I	GGYRCC	3 cut(s)	361, 367, 373
AccB7I	CCANNNNNTGG	2 cut(s)	470, 592
AciI	CCGC	4 cut(s)	200, 244, 283, 693
AclI	AACGTT	1 cut(s)	12
AclWI	GGATC	1 cut(s)	153
AcuI	CTGAAG	1 cut(s)	216
AcvI	CACGTG	1 cut(s)	388
AcyI	GRCGYC	3 cut(s)	222, 362, 368
AdeI	CACNNNGTG	1 cut(s)	762
AfaI	GTAC	6 cut(s)	110, 398, 432, 532, 575, 623
AfiI	CCNNNNNNNGG	6 cut(s)	163, 273, 292, 470, 592, 596
AgeI	ACCGGT	1 cut(s)	229
AgsI	TTSAA	1 cut(s)	187
AjiI	CACGTC	1 cut(s)	703
AjnI	CCWGG	2 cut(s)	65, 261
AluBI	AGCT	3 cut(s)	148, 425, 520
AluI	AGCT	3 cut(s)	148, 425, 520
Alw21I	GWGCWC	1 cut(s)	99
Alw26I	GTCTC	1 cut(s)	65
AlwI	GGATC	1 cut(s)	153
AlwNI	CAGNNNCTG	1 cut(s)	428
Ama87I	CYCGRG	1 cut(s)	272
AoxI	GGCC	5 cut(s)	63, 126, 154, 264, 735
ApeKI	GCWGC	2 cut(s)	419, 422
ArsI	GACNNNNNNTTYG	2 cut(s)	36, 68
AsiGI	ACCGGT	1 cut(s)	229
AspA2I	CCTAGG	1 cut(s)	287
AspLEI	GCGC	2 cut(s)	364, 370
AspS9I	GGNCC	3 cut(s)	341, 599, 712
AsuC2I	CCSGG	2 cut(s)	404, 716
AsuHPI	GGTGA	3 cut(s)	125, 434, 632
AvaI	CYCGRG	1 cut(s)	272
AvaII	GGWCC	3 cut(s)	341, 599, 712
AvrII	CCTAGG	1 cut(s)	287
BanI	GGYRCC	3 cut(s)	361, 367, 373
BanII	GRGCYC	1 cut(s)	280
BbrPI	CACGTG	1 cut(s)	388
BbsI	GAAGAC	1 cut(s)	40
Bbv12I	GWGCWC	1 cut(s)	99
BbvI	GCAGC	2 cut(s)	431, 434
BccI	CCATC	2 cut(s)	447, 651
BceAI	ACGGC	3 cut(s)	113, 187, 231
BciT130I	CCWGG	2 cut(s)	67, 263
BciVI	GTATCC	2 cut(s)	467, 518
BcnI	CCSGG	2 cut(s)	404, 716
BcoDI	GTCTC	1 cut(s)	65
BfaI	CTAG	1 cut(s)	288
BfoI	RGCGCY	2 cut(s)	365, 371
BfuAI	ACCTGC	3 cut(s)	385, 676, 686
BfuI	GTATCC	2 cut(s)	467, 518
BglII	AGATCT	1 cut(s)	117
BisI	GCNGC	5 cut(s)	201, 244, 283, 420, 423
BlnI	CCTAGG	1 cut(s)	287
BlsI	GCNGC	5 cut(s)	202, 245, 284, 421, 424
BmcAI	AGTACT	1 cut(s)	532
Bme1390I	CCNGG	4 cut(s)	67, 263, 404, 716
Bme18I	GGWCC	3 cut(s)	341, 599, 712
BmeT110I	CYCGRG	1 cut(s)	272
BmgBI	CACGTC	1 cut(s)	703
BmgT120I	GGNCC	3 cut(s)	341, 599, 712
BmiI	GGNNCC	4 cut(s)	363, 369, 375, 714
BmrFI	CCNGG	4 cut(s)	67, 263, 404, 716
BmsI	GCATC	2 cut(s)	457, 603
BoxI	GACNNNNGTC	2 cut(s)	44, 346
BpiI	GAAGAC	1 cut(s)	40
BpmI	CTGGAG	1 cut(s)	399
BpuEI	CTTGAG	1 cut(s)	552
BpuMI	CCSGG	2 cut(s)	404, 716
BsaAI	YACGTR	1 cut(s)	388
BsaHI	GRCGYC	3 cut(s)	222, 362, 368
BsaJI	CCNNGG	5 cut(s)	66, 78, 162, 287, 344
BsaWI	WCCGGW	1 cut(s)	229
BsaXI	ACNNNNNCTCC	6 cut(s)	292, 295, 298, 322, 325, 328
Bsc4I	CCNNNNNNNGG	6 cut(s)	163, 273, 292, 470, 592, 596
Bse118I	RCCGGY	5 cut(s)	229, 358, 364, 370, 733
Bse1I	ACTGG	2 cut(s)	19, 538
Bse3DI	GCAATG	2 cut(s)	398, 489
BseBI	CCWGG	2 cut(s)	67, 263
BseDI	CCNNGG	5 cut(s)	66, 78, 162, 287, 344
BseLI	CCNNNNNNNGG	6 cut(s)	163, 273, 292, 470, 592, 596
BseMI	GCAATG	2 cut(s)	398, 489
BseMII	CTCAG	1 cut(s)	80
BseNI	ACTGG	2 cut(s)	19, 538
BseRI	GAGGAG	4 cut(s)	300, 303, 306, 555
BseXI	GCAGC	2 cut(s)	431, 434
BseYI	CCCAGC	1 cut(s)	520
BshFI	GGCC	5 cut(s)	65, 128, 156, 266, 737
BshNI	GGYRCC	3 cut(s)	361, 367, 373
BshTI	ACCGGT	1 cut(s)	229
BsiHKAI	GWGCWC	1 cut(s)	99
BsiHKCI	CYCGRG	1 cut(s)	272
BsiSI	CCGG	7 cut(s)	230, 359, 365, 371, 404, 716, 734
BslFI	GGGAC	2 cut(s)	424, 698
BslI	CCNNNNNNNGG	6 cut(s)	163, 273, 292, 470, 592, 596
BsmAI	GTCTC	1 cut(s)	65
BsmFI	GGGAC	2 cut(s)	424, 698
BsnI	GGCC	5 cut(s)	65, 128, 156, 266, 737
BsoBI	CYCGRG	1 cut(s)	272
Bsp1286I	GDGCHC	2 cut(s)	99, 280
Bsp143I	GATC	2 cut(s)	117, 158
BspACI	CCGC	4 cut(s)	200, 244, 283, 693
BspANI	GGCC	5 cut(s)	65, 128, 156, 266, 737
BspCNI	CTCAG	1 cut(s)	81
BspLI	GGNNCC	4 cut(s)	363, 369, 375, 714
BspMI	ACCTGC	3 cut(s)	385, 676, 686
BspPI	GGATC	1 cut(s)	153
BspT107I	GGYRCC	3 cut(s)	361, 367, 373
BsrDI	GCAATG	2 cut(s)	398, 489
BsrFI	RCCGGY	5 cut(s)	229, 358, 364, 370, 733
BsrI	ACTGG	2 cut(s)	19, 538
BssAI	RCCGGY	5 cut(s)	229, 358, 364, 370, 733
BssECI	CCNNGG	5 cut(s)	66, 78, 162, 287, 344
BssMI	GATC	2 cut(s)	117, 158
BssNI	GRCGYC	3 cut(s)	222, 362, 368
BssT1I	CCWWGG	4 cut(s)	78, 162, 287, 344
Bst2UI	CCWGG	2 cut(s)	67, 263
Bst4CI	ACNGT	4 cut(s)	113, 530, 712, 760
BstACI	GRCGYC	3 cut(s)	222, 362, 368
BstBAI	YACGTR	1 cut(s)	388
BstC8I	GCNNGC	6 cut(s)	63, 214, 280, 360, 366, 372
BstDEI	CTNAG	2 cut(s)	89, 204
BstEII	GGTNACC	1 cut(s)	663
BstH2I	RGCGCY	2 cut(s)	365, 371
BstHHI	GCGC	2 cut(s)	364, 370
BstKTI	GATC	2 cut(s)	120, 161
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	2 cut(s)	117, 158
BstMWI	GCNNNNNNNGC	3 cut(s)	200, 209, 743
BstNI	CCWGG	2 cut(s)	67, 263
BstPAI	GACNNNNGTC	2 cut(s)	44, 346
BstPI	GGTNACC	1 cut(s)	663
BstSCI	CCNGG	4 cut(s)	65, 261, 402, 714
BstV1I	GCAGC	2 cut(s)	431, 434
BstV2I	GAAGAC	1 cut(s)	40
BstX2I	RGATCY	1 cut(s)	117
BstYI	RGATCY	1 cut(s)	117
BsuI	GTATCC	2 cut(s)	467, 518
BsuRI	GGCC	5 cut(s)	65, 128, 156, 266, 737
BtrI	CACGTC	1 cut(s)	703
BtsIMutI	CAGTG	1 cut(s)	765
BveI	ACCTGC	3 cut(s)	385, 676, 686
Cac8I	GCNNGC	6 cut(s)	63, 214, 280, 360, 366, 372
CaiI	CAGNNNCTG	1 cut(s)	428
CfoI	GCGC	2 cut(s)	364, 370
Cfr10I	RCCGGY	5 cut(s)	229, 358, 364, 370, 733
Cfr13I	GGNCC	3 cut(s)	341, 599, 712
CseI	GACGC	1 cut(s)	230
Csp6I	GTAC	6 cut(s)	109, 397, 431, 531, 574, 622
CspAI	ACCGGT	1 cut(s)	229
CviAII	CATG	2 cut(s)	547, 724
CviQI	GTAC	6 cut(s)	109, 397, 431, 531, 574, 622
DdeI	CTNAG	2 cut(s)	89, 204
DinI	GGCGCC	2 cut(s)	363, 369
DpnI	GATC	2 cut(s)	119, 160
DpnII	GATC	2 cut(s)	117, 158
DraIII	CACNNNGTG	1 cut(s)	762
Eco130I	CCWWGG	4 cut(s)	78, 162, 287, 344
Eco24I	GRGCYC	1 cut(s)	280
Eco47I	GGWCC	3 cut(s)	341, 599, 712
Eco57I	CTGAAG	1 cut(s)	216
Eco72I	CACGTG	1 cut(s)	388
Eco88I	CYCGRG	1 cut(s)	272
Eco91I	GGTNACC	1 cut(s)	663
EcoO65I	GGTNACC	1 cut(s)	663
EcoRII	CCWGG	2 cut(s)	65, 261
EcoT14I	CCWWGG	4 cut(s)	78, 162, 287, 344
EcoT38I	GRGCYC	1 cut(s)	280
EgeI	GGCGCC	2 cut(s)	363, 369
EheI	GGCGCC	2 cut(s)	363, 369
ErhI	CCWWGG	4 cut(s)	78, 162, 287, 344
FaeI	CATG	2 cut(s)	550, 727
FaiI	YATR	8 cut(s)	353, 471, 503, 548, 579, 593, 654, 725
FaqI	GGGAC	2 cut(s)	424, 698
FatI	CATG	2 cut(s)	546, 723
Fnu4HI	GCNGC	5 cut(s)	201, 244, 283, 420, 423
FriOI	GRGCYC	1 cut(s)	280
Fsp4HI	GCNGC	5 cut(s)	201, 244, 283, 420, 423
FspBI	CTAG	1 cut(s)	288
GlaI	GCGC	2 cut(s)	363, 369
GluI	GCNGC	5 cut(s)	201, 244, 283, 420, 423
GsaI	CCCAGC	1 cut(s)	524
GsuI	CTGGAG	1 cut(s)	399
HaeII	RGCGCY	2 cut(s)	365, 371
HaeIII	GGCC	5 cut(s)	65, 128, 156, 266, 737
HapII	CCGG	7 cut(s)	230, 359, 365, 371, 404, 716, 734
HgaI	GACGC	1 cut(s)	230
HhaI	GCGC	2 cut(s)	364, 370
Hin1I	GRCGYC	3 cut(s)	222, 362, 368
Hin1II	CATG	2 cut(s)	550, 727
Hin6I	GCGC	2 cut(s)	362, 368
HinP1I	GCGC	2 cut(s)	362, 368
HincII	GTYRAC	1 cut(s)	16
HindII	GTYRAC	1 cut(s)	16
HinfI	GANTC	2 cut(s)	73, 412
HpaI	GTTAAC	1 cut(s)	16
HpaII	CCGG	7 cut(s)	230, 359, 365, 371, 404, 716, 734
HphI	GGTGA	3 cut(s)	125, 434, 632
Hpy166II	GTNNAC	2 cut(s)	16, 574
Hpy188I	TCNGA	3 cut(s)	56, 90, 142
Hpy188III	TCNNGA	1 cut(s)	178
Hpy8I	GTNNAC	2 cut(s)	16, 574
Hpy99I	CGWCG	2 cut(s)	56, 707
HpyAV	CCTTC	1 cut(s)	202
HpyCH4III	ACNGT	4 cut(s)	113, 530, 712, 760
HpyCH4IV	ACGT	4 cut(s)	12, 182, 387, 702
HpyCH4V	TGCA	4 cut(s)	258, 380, 391, 494
HpyF10VI	GCNNNNNNNGC	3 cut(s)	200, 209, 743
HpyF3I	CTNAG	2 cut(s)	89, 204
HpySE526I	ACGT	4 cut(s)	12, 182, 387, 702
Hsp92I	GRCGYC	3 cut(s)	222, 362, 368
Hsp92II	CATG	2 cut(s)	550, 727
HspAI	GCGC	2 cut(s)	362, 368
KasI	GGCGCC	2 cut(s)	361, 367
KroI	GCCGGC	3 cut(s)	358, 364, 370
KroNI	GCCGGC	3 cut(s)	360, 366, 372
KspAI	GTTAAC	1 cut(s)	16
Kzo9I	GATC	2 cut(s)	117, 158
LmnI	GCTCC	1 cut(s)	751
Lsp1109I	GCAGC	2 cut(s)	431, 434
LweI	GCATC	2 cut(s)	457, 603
MaeI	CTAG	1 cut(s)	288
MaeII	ACGT	4 cut(s)	12, 182, 387, 702
MaeIII	GTNAC	4 cut(s)	178, 542, 663, 698
MalI	GATC	2 cut(s)	119, 160
MboI	GATC	2 cut(s)	117, 158
MboII	GAAGA	2 cut(s)	40, 670
MfeI	CAATTG	1 cut(s)	741
MflI	RGATCY	1 cut(s)	117
MhlI	GDGCHC	2 cut(s)	99, 280
MluCI	AATT	2 cut(s)	674, 741
Mly113I	GGCGCC	2 cut(s)	362, 368
MlyI	GAGTC	2 cut(s)	67, 406
MmeI	TCCRAC	1 cut(s)	34
MreI	CGCCGGCG	2 cut(s)	358, 364
MroNI	GCCGGC	3 cut(s)	358, 364, 370
MseI	TTAA	1 cut(s)	15
MslI	CAYNNNNRTG	1 cut(s)	611
MspI	CCGG	7 cut(s)	230, 359, 365, 371, 404, 716, 734
MspR9I	CCNGG	4 cut(s)	67, 263, 404, 716
MunI	CAATTG	1 cut(s)	741
MvaI	CCWGG	2 cut(s)	67, 263
MwoI	GCNNNNNNNGC	3 cut(s)	200, 209, 743
NaeI	GCCGGC	3 cut(s)	360, 366, 372
NarI	GGCGCC	2 cut(s)	362, 368
NciI	CCSGG	2 cut(s)	404, 716
NdeII	GATC	2 cut(s)	117, 158
NgoMIV	GCCGGC	3 cut(s)	358, 364, 370
NlaIII	CATG	2 cut(s)	550, 727
NlaIV	GGNNCC	4 cut(s)	363, 369, 375, 714
NmuCI	GTSAC	2 cut(s)	178, 698
PaqCI	CACCTGC	1 cut(s)	385
PdiI	GCCGGC	3 cut(s)	360, 366, 372
PflMI	CCANNNNNTGG	2 cut(s)	470, 592
PinAI	ACCGGT	1 cut(s)	229
PkrI	GCNGC	5 cut(s)	202, 245, 284, 421, 424
PleI	GAGTC	2 cut(s)	67, 406
PluTI	GGCGCC	2 cut(s)	365, 371
PmaCI	CACGTG	1 cut(s)	388
PmlI	CACGTG	1 cut(s)	388
PpsI	GAGTC	2 cut(s)	67, 406
Ppu21I	YACGTR	1 cut(s)	388
PshAI	GACNNNNGTC	2 cut(s)	44, 346
Psp1406I	AACGTT	1 cut(s)	12
Psp6I	CCWGG	2 cut(s)	65, 261
PspCI	CACGTG	1 cut(s)	388
PspEI	GGTNACC	1 cut(s)	663
PspFI	CCCAGC	1 cut(s)	520
PspGI	CCWGG	2 cut(s)	65, 261
PspN4I	GGNNCC	4 cut(s)	363, 369, 375, 714
PspPI	GGNCC	3 cut(s)	341, 599, 712
PstNI	CAGNNNCTG	1 cut(s)	428
PsuI	RGATCY	1 cut(s)	117
RsaI	GTAC	6 cut(s)	110, 398, 432, 532, 575, 623
RsaNI	GTAC	6 cut(s)	109, 397, 431, 531, 574, 622
RseI	CAYNNNNRTG	1 cut(s)	611
SaqAI	TTAA	1 cut(s)	15
SatI	GCNGC	5 cut(s)	201, 244, 283, 420, 423
Sau3AI	GATC	2 cut(s)	117, 158
Sau96I	GGNCC	3 cut(s)	341, 599, 712
ScaI	AGTACT	1 cut(s)	532
SchI	GAGTC	2 cut(s)	67, 406
ScrFI	CCNGG	4 cut(s)	67, 263, 404, 716
SduI	GDGCHC	2 cut(s)	99, 280
SfaNI	GCATC	2 cut(s)	457, 603
SfoI	GGCGCC	2 cut(s)	363, 369
SgrAI	CRCCGGYG	2 cut(s)	358, 364
SinI	GGWCC	3 cut(s)	341, 599, 712
SmiMI	CAYNNNNRTG	1 cut(s)	611
SmlI	CTYRAG	1 cut(s)	567
SmoI	CTYRAG	1 cut(s)	567
Sse9I	AATT	2 cut(s)	674, 741
SsiI	CCGC	4 cut(s)	200, 244, 283, 693
SspDI	GGCGCC	2 cut(s)	361, 367
SspMI	CTAG	1 cut(s)	288
StyD4I	CCNGG	4 cut(s)	65, 261, 402, 714
StyI	CCWWGG	4 cut(s)	78, 162, 287, 344
TaaI	ACNGT	4 cut(s)	113, 530, 712, 760
TaiI	ACGT	4 cut(s)	15, 185, 390, 705
TaqI	TCGA	1 cut(s)	102
TasI	AATT	2 cut(s)	674, 741
TatI	WGTACW	1 cut(s)	530
TauI	GCSGC	3 cut(s)	203, 246, 285
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TscAI	CASTG	1 cut(s)	765
TseFI	GTSAC	2 cut(s)	178, 698
TseI	GCWGC	2 cut(s)	419, 422
Tsp45I	GTSAC	2 cut(s)	178, 698
TspDTI	ATGAA	1 cut(s)	563
TspRI	CASTG	1 cut(s)	765
Van91I	CCANNNNNTGG	2 cut(s)	470, 592
VpaK11BI	GGWCC	3 cut(s)	341, 599, 712
XcmI	CCANNNNNNNNNTGG	2 cut(s)	259, 593
XmaJI	CCTAGG	1 cut(s)	287
XspI	CTAG	1 cut(s)	288
ZrmI	AGTACT	1 cut(s)	532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.