Rmu_sc0000133.1_g000033

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000133.1
OG0015776
Physical Location & Seq
Forward (+)
156258 .. 156665
408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000133.1_g000033.1.cds

Sequence Viewer

Length: 408 bp
atgactcgtcatatggatgattcgctaaaatacgaatgtatgaatgaagaagaccccacaaggctgtgggtctcacttgaagaaagatttggcaacttccgtgactccctgcttcctgacctagaagtgagatggcataacctccgctcctgtgatttcaaatcagttcttgactacaactcggaagcatctctcattaaatccttaatggaattctgtggtaaagagatcacaaatgagttgttgattgagaagactctctctaccttcctcgtctctgcattgatggttactaagaattatcaaatcgatgttactgcaggacggatcacaaggtttcatgagctcattggagctatgaatgtcgctgaaaagcatgacaacatccttgtgaagaactataattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

135

Amino Acids

15.8

Weight (kDa)

5.2

Isoelectric Point (pI)

46.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 147
AciI CCGC 1 cut(s) 145
AclWI GGATC 1 cut(s) 335
AcsI RAATTY 1 cut(s) 212
AgsI TTSAA 2 cut(s) 80, 160
AjuI GAANNNNNNNTTGG 2 cut(s) 72, 104
AluBI AGCT 2 cut(s) 346, 356
AluI AGCT 2 cut(s) 346, 356
Alw21I GWGCWC 1 cut(s) 348
Alw26I GTCTC 2 cut(s) 76, 280
AlwI GGATC 1 cut(s) 335
ApoI RAATTY 1 cut(s) 212
BanII GRGCYC 1 cut(s) 348
BbsI GAAGAC 2 cut(s) 57, 260
Bbv12I GWGCWC 1 cut(s) 348
BccI CCATC 2 cut(s) 126, 280
BcgI CGANNNNNNTGC 2 cut(s) 299, 333
BcoDI GTCTC 2 cut(s) 76, 280
BfaI CTAG 1 cut(s) 122
BfmI CTRYAG 1 cut(s) 318
BmsI GCATC 1 cut(s) 197
BpiI GAAGAC 2 cut(s) 57, 260
Bsa29I ATCGAT 1 cut(s) 309
BsaI GGTCTC 1 cut(s) 76
BsaXI ACNNNNNCTCC 2 cut(s) 131, 161
BseCI ATCGAT 1 cut(s) 309
BseGI GGATG 2 cut(s) 22, 384
BshVI ATCGAT 1 cut(s) 309
BsiHKAI GWGCWC 1 cut(s) 348
BsmAI GTCTC 2 cut(s) 76, 280
BsmBI CGTCTC 1 cut(s) 280
Bso31I GGTCTC 1 cut(s) 76
Bsp1286I GDGCHC 1 cut(s) 348
Bsp143I GATC 2 cut(s) 228, 327
BspACI CCGC 1 cut(s) 145
BspDI ATCGAT 1 cut(s) 309
BspHI TCATGA 1 cut(s) 340
BspMAI CTGCAG 1 cut(s) 322
BspPI GGATC 1 cut(s) 335
BspTNI GGTCTC 1 cut(s) 76
BsrBI CCGCTC 1 cut(s) 147
BssMI GATC 2 cut(s) 228, 327
BstDEI CTNAG 1 cut(s) 294
BstF5I GGATG 2 cut(s) 22, 384
BstKTI GATC 2 cut(s) 231, 330
BstMAI GTCTC 2 cut(s) 76, 280
BstMBI GATC 2 cut(s) 228, 327
BstSFI CTRYAG 1 cut(s) 318
BstV2I GAAGAC 2 cut(s) 57, 260
Bsu15I ATCGAT 1 cut(s) 309
BsuTUI ATCGAT 1 cut(s) 309
BtsCI GGATG 2 cut(s) 22, 384
CciI TCATGA 1 cut(s) 340
ClaI ATCGAT 1 cut(s) 309
CviAII CATG 2 cut(s) 341, 377
CviJI RGCY 3 cut(s) 64, 346, 356
CviKI_1 RGCY 3 cut(s) 64, 346, 356
DdeI CTNAG 1 cut(s) 294
DpnI GATC 2 cut(s) 230, 329
DpnII GATC 2 cut(s) 228, 327
Ecl136II GAGCTC 1 cut(s) 346
Eco24I GRGCYC 1 cut(s) 348
Eco31I GGTCTC 1 cut(s) 76
Eco53kI GAGCTC 1 cut(s) 346
EcoICRI GAGCTC 1 cut(s) 346
EcoRI GAATTC 1 cut(s) 212
EcoT38I GRGCYC 1 cut(s) 348
Esp3I CGTCTC 1 cut(s) 280
FaeI CATG 2 cut(s) 344, 380
FaiI YATR 8 cut(s) 12, 14, 41, 138, 342, 359, 378, 402
FatI CATG 2 cut(s) 340, 376
FauNDI CATATG 1 cut(s) 12
FokI GGATG 2 cut(s) 29, 371
FriOI GRGCYC 1 cut(s) 348
FspBI CTAG 1 cut(s) 122
Hin1II CATG 2 cut(s) 344, 380
HinfI GANTC 4 cut(s) 4, 20, 104, 256
Hpy188I TCNGA 1 cut(s) 184
Hpy188III TCNNGA 3 cut(s) 116, 170, 341
HpyAV CCTTC 1 cut(s) 277
HpyCH4V TGCA 2 cut(s) 281, 320
HpyF3I CTNAG 1 cut(s) 294
Hsp92II CATG 2 cut(s) 344, 380
Kzo9I GATC 2 cut(s) 228, 327
LmnI GCTCC 2 cut(s) 152, 353
LpnPI CCDG 4 cut(s) 122, 129, 163, 306
LweI GCATC 1 cut(s) 197
MaeI CTAG 1 cut(s) 122
MaeIII GTNAC 3 cut(s) 101, 289, 313
MalI GATC 2 cut(s) 230, 329
MbiI CCGCTC 1 cut(s) 147
MboI GATC 2 cut(s) 228, 327
MboII GAAGA 5 cut(s) 59, 62, 92, 265, 406
MhlI GDGCHC 1 cut(s) 348
MluCI AATT 3 cut(s) 212, 298, 403
MlyI GAGTC 2 cut(s) 98, 250
MnlI CCTC 2 cut(s) 152, 281
MseI TTAA 2 cut(s) 198, 206
MslI CAYNNNNRTG 2 cut(s) 15, 389
NdeI CATATG 1 cut(s) 12
NdeII GATC 2 cut(s) 228, 327
NlaIII CATG 2 cut(s) 344, 380
NmuCI GTSAC 1 cut(s) 101
PagI TCATGA 1 cut(s) 340
PfeI GAWTC 1 cut(s) 20
PleI GAGTC 2 cut(s) 98, 250
PpsI GAGTC 2 cut(s) 98, 250
Psp124BI GAGCTC 1 cut(s) 348
PstI CTGCAG 1 cut(s) 322
RseI CAYNNNNRTG 2 cut(s) 15, 389
SacI GAGCTC 1 cut(s) 348
SaqAI TTAA 2 cut(s) 198, 206
Sau3AI GATC 2 cut(s) 228, 327
SchI GAGTC 2 cut(s) 98, 250
SduI GDGCHC 1 cut(s) 348
SetI ASST 6 cut(s) 123, 144, 269, 338, 348, 358
SfaNI GCATC 1 cut(s) 197
SfcI CTRYAG 1 cut(s) 318
SmiMI CAYNNNNRTG 2 cut(s) 15, 389
Sse9I AATT 3 cut(s) 212, 298, 403
SsiI CCGC 1 cut(s) 145
SspMI CTAG 1 cut(s) 122
SstI GAGCTC 1 cut(s) 348
TaqI TCGA 1 cut(s) 309
TasI AATT 3 cut(s) 212, 298, 403
TfiI GAWTC 1 cut(s) 20
Tru1I TTAA 2 cut(s) 198, 206
Tru9I TTAA 2 cut(s) 198, 206
TseFI GTSAC 1 cut(s) 101
Tsp45I GTSAC 1 cut(s) 101
TspDTI ATGAA 4 cut(s) 56, 60, 329, 374
TspGWI ACGGA 2 cut(s) 89, 340
XapI RAATTY 1 cut(s) 212
XspI CTAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.