No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_multiflora | Rmu_sc0000131.1_g000034 Rmu_sc0000133.1_g000033 Rmu_sc0000806.1_g000028 Rmu_sc0001464.1_g000015 Rmu_sc0002460.1_g000047 Rmu_sc0002914.1_g000022 Rmu_sc0005142.1_g000029 Rmu_sc0005446.1_g000022 Rmu_sc0007727.1_g000007 Rmu_sc0012995.1_g000002 Rmu_sc0013240.1_g000002 Rmu_ssc0000434.1_g000034 Rmu_ssc0000436.1_g000014 |
| rosa_roxburghii | Rroxscaffold_1G00013370 |
| rosa_samantha | Rh2BG200500 Rh6AG141400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 133 |
| AcsI | RAATTY | 1 cut(s) | 200 |
| AfaI | GTAC | 1 cut(s) | 20 |
| AgsI | TTSAA | 2 cut(s) | 148, 188 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 60, 92 |
| Alw26I | GTCTC | 1 cut(s) | 64 |
| ApoI | RAATTY | 1 cut(s) | 200 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 177 |
| AsuII | TTCGAA | 1 cut(s) | 235 |
| BbsI | GAAGAC | 1 cut(s) | 45 |
| BccI | CCATC | 1 cut(s) | 114 |
| BcoDI | GTCTC | 1 cut(s) | 64 |
| BfaI | CTAG | 1 cut(s) | 110 |
| BmsI | GCATC | 2 cut(s) | 219, 249 |
| BpiI | GAAGAC | 1 cut(s) | 45 |
| Bpu14I | TTCGAA | 1 cut(s) | 235 |
| BsaI | GGTCTC | 1 cut(s) | 64 |
| Bse1I | ACTGG | 1 cut(s) | 16 |
| BseGI | GGATG | 1 cut(s) | 10 |
| BseNI | ACTGG | 1 cut(s) | 16 |
| BsmAI | GTCTC | 1 cut(s) | 64 |
| BsmI | GAATGC | 1 cut(s) | 183 |
| Bso31I | GGTCTC | 1 cut(s) | 64 |
| Bsp119I | TTCGAA | 1 cut(s) | 235 |
| Bsp143I | GATC | 1 cut(s) | 216 |
| BspACI | CCGC | 1 cut(s) | 133 |
| BspT104I | TTCGAA | 1 cut(s) | 235 |
| BspTNI | GGTCTC | 1 cut(s) | 64 |
| BsrI | ACTGG | 1 cut(s) | 16 |
| BssMI | GATC | 1 cut(s) | 216 |
| BstBI | TTCGAA | 1 cut(s) | 235 |
| BstDEI | CTNAG | 1 cut(s) | 263 |
| BstF5I | GGATG | 1 cut(s) | 10 |
| BstKTI | GATC | 1 cut(s) | 219 |
| BstMAI | GTCTC | 1 cut(s) | 64 |
| BstMBI | GATC | 1 cut(s) | 216 |
| BstV2I | GAAGAC | 1 cut(s) | 45 |
| BtgZI | GCGATG | 1 cut(s) | 242 |
| BtsCI | GGATG | 1 cut(s) | 10 |
| Csp6I | GTAC | 1 cut(s) | 19 |
| CviJI | RGCY | 2 cut(s) | 52, 129 |
| CviKI_1 | RGCY | 2 cut(s) | 52, 129 |
| CviQI | GTAC | 1 cut(s) | 19 |
| DdeI | CTNAG | 1 cut(s) | 263 |
| DpnI | GATC | 1 cut(s) | 218 |
| DpnII | GATC | 1 cut(s) | 216 |
| Eco31I | GGTCTC | 1 cut(s) | 64 |
| EcoRI | GAATTC | 1 cut(s) | 200 |
| FaiI | YATR | 7 cut(s) | 29, 55, 126, 207, 247, 249, 258 |
| FokI | GGATG | 1 cut(s) | 17 |
| FspBI | CTAG | 1 cut(s) | 110 |
| HinfI | GANTC | 2 cut(s) | 8, 92 |
| Hpy188I | TCNGA | 1 cut(s) | 172 |
| Hpy188III | TCNNGA | 2 cut(s) | 104, 158 |
| HpyAV | CCTTC | 1 cut(s) | 42 |
| HpyCH4IV | ACGT | 1 cut(s) | 84 |
| HpyCH4V | TGCA | 1 cut(s) | 260 |
| HpyF3I | CTNAG | 1 cut(s) | 263 |
| HpySE526I | ACGT | 1 cut(s) | 84 |
| Kzo9I | GATC | 1 cut(s) | 216 |
| LmnI | GCTCC | 1 cut(s) | 18 |
| LpnPI | CCDG | 3 cut(s) | 29, 110, 117 |
| LweI | GCATC | 2 cut(s) | 219, 249 |
| MaeI | CTAG | 1 cut(s) | 110 |
| MaeII | ACGT | 1 cut(s) | 84 |
| MaeIII | GTNAC | 1 cut(s) | 89 |
| MalI | GATC | 1 cut(s) | 218 |
| MboI | GATC | 1 cut(s) | 216 |
| MboII | GAAGA | 3 cut(s) | 47, 50, 80 |
| MluCI | AATT | 2 cut(s) | 153, 200 |
| MlyI | GAGTC | 1 cut(s) | 86 |
| MnlI | CCTC | 1 cut(s) | 140 |
| MroXI | GAANNNNTTC | 1 cut(s) | 177 |
| MseI | TTAA | 1 cut(s) | 194 |
| Mva1269I | GAATGC | 1 cut(s) | 183 |
| NdeII | GATC | 1 cut(s) | 216 |
| NmuCI | GTSAC | 1 cut(s) | 89 |
| NspV | TTCGAA | 1 cut(s) | 235 |
| PctI | GAATGC | 1 cut(s) | 183 |
| PdmI | GAANNNNTTC | 1 cut(s) | 177 |
| PfeI | GAWTC | 1 cut(s) | 8 |
| PleI | GAGTC | 1 cut(s) | 86 |
| PpsI | GAGTC | 1 cut(s) | 86 |
| RsaI | GTAC | 1 cut(s) | 20 |
| RsaNI | GTAC | 1 cut(s) | 19 |
| SaqAI | TTAA | 1 cut(s) | 194 |
| Sau3AI | GATC | 1 cut(s) | 216 |
| SchI | GAGTC | 1 cut(s) | 86 |
| SetI | ASST | 2 cut(s) | 87, 111 |
| SfaNI | GCATC | 2 cut(s) | 219, 249 |
| SfuI | TTCGAA | 1 cut(s) | 235 |
| Sse9I | AATT | 2 cut(s) | 153, 200 |
| SsiI | CCGC | 1 cut(s) | 133 |
| SspMI | CTAG | 1 cut(s) | 110 |
| TaiI | ACGT | 1 cut(s) | 87 |
| TaqI | TCGA | 2 cut(s) | 66, 235 |
| TasI | AATT | 2 cut(s) | 153, 200 |
| TatI | WGTACW | 1 cut(s) | 18 |
| TfiI | GAWTC | 1 cut(s) | 8 |
| Tru1I | TTAA | 1 cut(s) | 194 |
| Tru9I | TTAA | 1 cut(s) | 194 |
| TseFI | GTSAC | 1 cut(s) | 89 |
| Tsp45I | GTSAC | 1 cut(s) | 89 |
| TspDTI | ATGAA | 2 cut(s) | 44, 48 |
| TspGWI | ACGGA | 1 cut(s) | 77 |
| XapI | RAATTY | 1 cut(s) | 200 |
| XmnI | GAANNNNTTC | 1 cut(s) | 177 |
| XspI | CTAG | 1 cut(s) | 110 |