Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001464.1

Orthogroup ID

OG0015776

Physical Location & Seq

Genomic Coordinates Forward (+)

66441 .. 66809

Gene Structure 369 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001464.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

atgaatgaagaagaccccagaaagttgtgggtctcactcgaagaaagatttggcaatgtccgtgactccctgcctcctgacctagaagtgagatggcatagcctccgcttctgtgatttcaagtcagttcttgactacaactcagaagcacttcgcattaaatccttaatggaattctgtggtaaagagatcacagatgcgatgttgattgagaagactctctctacctcccccgtctctgcattgatagttgctaagaactatcaaagcgatgttactgcaggacggatcacaaggtttcatgagctcattggagctatgaatgtagctgacaagcatgacaacatccttgtaaagaactataattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotran_gag_2 zf-CCHC

Protein Analysis

122

Amino Acids

14.05

Weight (kDa)

5.6

Isoelectric Point (pI)

45.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015776)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000131.1_g000034 Rmu_sc0000133.1_g000033 Rmu_sc0000806.1_g000028 Rmu_sc0001464.1_g000015 Rmu_sc0002460.1_g000047 Rmu_sc0002914.1_g000022 Rmu_sc0005142.1_g000029 Rmu_sc0005446.1_g000022 Rmu_sc0007727.1_g000007 Rmu_sc0012995.1_g000002 Rmu_sc0013240.1_g000002 Rmu_ssc0000434.1_g000034 Rmu_ssc0000436.1_g000014
rosa_roxburghii	Rroxscaffold_1G00013370
rosa_samantha	Rh2BG200500 Rh6AG141400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	106
AclWI	GGATC	1 cut(s)	296
AcsI	RAATTY	1 cut(s)	173
AgsI	TTSAA	1 cut(s)	121
AjuI	GAANNNNNNNTTGG	2 cut(s)	33, 65
AluBI	AGCT	3 cut(s)	307, 317, 329
AluI	AGCT	3 cut(s)	307, 317, 329
Alw21I	GWGCWC	1 cut(s)	309
Alw26I	GTCTC	2 cut(s)	37, 241
AlwI	GGATC	1 cut(s)	296
ApoI	RAATTY	1 cut(s)	173
Asp700I	GAANNNNTTC	1 cut(s)	150
BanII	GRGCYC	1 cut(s)	309
BbsI	GAAGAC	2 cut(s)	18, 221
Bbv12I	GWGCWC	1 cut(s)	309
BccI	CCATC	1 cut(s)	87
BcgI	CGANNNNNNTGC	2 cut(s)	260, 294
BcoDI	GTCTC	2 cut(s)	37, 241
BfaI	CTAG	1 cut(s)	83
BfmI	CTRYAG	1 cut(s)	279
BmsI	GCATC	1 cut(s)	187
BpiI	GAAGAC	2 cut(s)	18, 221
BsaI	GGTCTC	1 cut(s)	37
Bse3DI	GCAATG	1 cut(s)	61
BseGI	GGATG	1 cut(s)	345
BseMI	GCAATG	1 cut(s)	61
BseMII	CTCAG	1 cut(s)	156
BsiHKAI	GWGCWC	1 cut(s)	309
BsmAI	GTCTC	2 cut(s)	37, 241
BsmBI	CGTCTC	1 cut(s)	241
Bso31I	GGTCTC	1 cut(s)	37
Bsp1286I	GDGCHC	1 cut(s)	309
Bsp143I	GATC	2 cut(s)	189, 288
BspACI	CCGC	1 cut(s)	106
BspCNI	CTCAG	1 cut(s)	155
BspHI	TCATGA	1 cut(s)	301
BspMAI	CTGCAG	1 cut(s)	283
BspPI	GGATC	1 cut(s)	296
BspTNI	GGTCTC	1 cut(s)	37
BsrDI	GCAATG	1 cut(s)	61
BssMI	GATC	2 cut(s)	189, 288
BstDEI	CTNAG	2 cut(s)	142, 255
BstF5I	GGATG	1 cut(s)	345
BstKTI	GATC	2 cut(s)	192, 291
BstMAI	GTCTC	2 cut(s)	37, 241
BstMBI	GATC	2 cut(s)	189, 288
BstSFI	CTRYAG	1 cut(s)	279
BstV2I	GAAGAC	2 cut(s)	18, 221
BtgZI	GCGATG	2 cut(s)	215, 285
BtsCI	GGATG	1 cut(s)	345
CciI	TCATGA	1 cut(s)	301
CviAII	CATG	2 cut(s)	302, 338
CviJI	RGCY	4 cut(s)	102, 307, 317, 329
CviKI_1	RGCY	4 cut(s)	102, 307, 317, 329
DdeI	CTNAG	2 cut(s)	142, 255
DpnI	GATC	2 cut(s)	191, 290
DpnII	GATC	2 cut(s)	189, 288
Ecl136II	GAGCTC	1 cut(s)	307
Eco24I	GRGCYC	1 cut(s)	309
Eco31I	GGTCTC	1 cut(s)	37
Eco53kI	GAGCTC	1 cut(s)	307
EcoICRI	GAGCTC	1 cut(s)	307
EcoRI	GAATTC	1 cut(s)	173
EcoT38I	GRGCYC	1 cut(s)	309
Esp3I	CGTCTC	1 cut(s)	241
FaeI	CATG	2 cut(s)	305, 341
FaiI	YATR	5 cut(s)	99, 303, 320, 339, 363
FatI	CATG	2 cut(s)	301, 337
FokI	GGATG	1 cut(s)	332
FriOI	GRGCYC	1 cut(s)	309
FspBI	CTAG	1 cut(s)	83
Hin1II	CATG	2 cut(s)	305, 341
HinfI	GANTC	2 cut(s)	65, 217
Hpy188I	TCNGA	1 cut(s)	145
Hpy188III	TCNNGA	3 cut(s)	77, 131, 302
HpyCH4V	TGCA	2 cut(s)	242, 281
HpyF3I	CTNAG	2 cut(s)	142, 255
Hsp92II	CATG	2 cut(s)	305, 341
Kzo9I	GATC	2 cut(s)	189, 288
LmnI	GCTCC	1 cut(s)	314
LpnPI	CCDG	4 cut(s)	31, 83, 90, 267
LweI	GCATC	1 cut(s)	187
MaeI	CTAG	1 cut(s)	83
MaeIII	GTNAC	2 cut(s)	62, 274
MalI	GATC	2 cut(s)	191, 290
MboI	GATC	2 cut(s)	189, 288
MboII	GAAGA	4 cut(s)	20, 23, 53, 226
MhlI	GDGCHC	1 cut(s)	309
MluCI	AATT	2 cut(s)	173, 364
MlyI	GAGTC	2 cut(s)	59, 211
MnlI	CCTC	3 cut(s)	84, 113, 238
MroXI	GAANNNNTTC	1 cut(s)	150
MseI	TTAA	2 cut(s)	159, 167
NdeII	GATC	2 cut(s)	189, 288
NlaIII	CATG	2 cut(s)	305, 341
NmuCI	GTSAC	1 cut(s)	62
PagI	TCATGA	1 cut(s)	301
PdmI	GAANNNNTTC	1 cut(s)	150
PleI	GAGTC	2 cut(s)	59, 211
PpsI	GAGTC	2 cut(s)	59, 211
Psp124BI	GAGCTC	1 cut(s)	309
PstI	CTGCAG	1 cut(s)	283
SacI	GAGCTC	1 cut(s)	309
SaqAI	TTAA	2 cut(s)	159, 167
Sau3AI	GATC	2 cut(s)	189, 288
SchI	GAGTC	2 cut(s)	59, 211
SduI	GDGCHC	1 cut(s)	309
SetI	ASST	6 cut(s)	84, 230, 299, 309, 319, 331
SfaNI	GCATC	1 cut(s)	187
SfcI	CTRYAG	1 cut(s)	279
Sse9I	AATT	2 cut(s)	173, 364
SsiI	CCGC	1 cut(s)	106
SspMI	CTAG	1 cut(s)	83
SstI	GAGCTC	1 cut(s)	309
TaqI	TCGA	1 cut(s)	39
TasI	AATT	2 cut(s)	173, 364
Tru1I	TTAA	2 cut(s)	159, 167
Tru9I	TTAA	2 cut(s)	159, 167
TseFI	GTSAC	1 cut(s)	62
Tsp45I	GTSAC	1 cut(s)	62
TspDTI	ATGAA	4 cut(s)	17, 21, 290, 335
TspGWI	ACGGA	2 cut(s)	50, 301
XapI	RAATTY	1 cut(s)	173
XmnI	GAANNNNTTC	1 cut(s)	150
XspI	CTAG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.