Rmu_sc0005142.1_g000029

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005142.1
OG0015776
Physical Location & Seq
Reverse (-)
129295 .. 129657
363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005142.1_g000029.1.cds

Sequence Viewer

Length: 363 bp
atggatgattcactccagtacgagtatatgaatgaagaagaccccagaaggctatgggtctcactcgaagaaagatttggcaaagtccgtgactccttgcttcctgacctagaagtgagatggcatagcctccgcttctgtgatttcaagacagttcttgactataactcggaagcacttcgcattaaatccttaatggaattctgtggtaaagagatcacagatgcgatgttgattgagaagactctctcttccttccccgtctctgcattgatggttgctaagaactatcgaatcgatgttaatgcaagacggatcacaaggtttcatgagctcattggagctccttgtgaagaactataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

120

Amino Acids

14.2

Weight (kDa)

5.08

Isoelectric Point (pI)

56.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 133
AclWI GGATC 1 cut(s) 323
AcsI RAATTY 1 cut(s) 200
AfaI GTAC 1 cut(s) 20
AgsI TTSAA 1 cut(s) 148
AjuI GAANNNNNNNTTGG 2 cut(s) 60, 92
AluBI AGCT 2 cut(s) 334, 344
AluI AGCT 2 cut(s) 334, 344
Alw21I GWGCWC 2 cut(s) 336, 346
Alw26I GTCTC 2 cut(s) 64, 268
AlwI GGATC 1 cut(s) 323
ApoI RAATTY 1 cut(s) 200
Asp700I GAANNNNTTC 1 cut(s) 177
BanII GRGCYC 2 cut(s) 336, 346
BbsI GAAGAC 2 cut(s) 45, 248
Bbv12I GWGCWC 2 cut(s) 336, 346
BccI CCATC 2 cut(s) 114, 268
BcgI CGANNNNNNTGC 2 cut(s) 287, 321
BcoDI GTCTC 2 cut(s) 64, 268
BfaI CTAG 1 cut(s) 110
BmsI GCATC 1 cut(s) 214
BpiI GAAGAC 2 cut(s) 45, 248
Bsa29I ATCGAT 1 cut(s) 297
BsaI GGTCTC 1 cut(s) 64
Bse1I ACTGG 1 cut(s) 16
BseCI ATCGAT 1 cut(s) 297
BseGI GGATG 1 cut(s) 10
BseNI ACTGG 1 cut(s) 16
BshVI ATCGAT 1 cut(s) 297
BsiHKAI GWGCWC 2 cut(s) 336, 346
BsmAI GTCTC 2 cut(s) 64, 268
BsmBI CGTCTC 1 cut(s) 268
Bso31I GGTCTC 1 cut(s) 64
Bsp1286I GDGCHC 2 cut(s) 336, 346
Bsp143I GATC 2 cut(s) 216, 315
BspACI CCGC 1 cut(s) 133
BspDI ATCGAT 1 cut(s) 297
BspHI TCATGA 1 cut(s) 328
BspPI GGATC 1 cut(s) 323
BspTNI GGTCTC 1 cut(s) 64
BsrI ACTGG 1 cut(s) 16
BssMI GATC 2 cut(s) 216, 315
Bst4CI ACNGT 1 cut(s) 154
Bst6I CTCTTC 1 cut(s) 256
BstDEI CTNAG 1 cut(s) 282
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 2 cut(s) 219, 318
BstMAI GTCTC 2 cut(s) 64, 268
BstMBI GATC 2 cut(s) 216, 315
BstV2I GAAGAC 2 cut(s) 45, 248
Bsu15I ATCGAT 1 cut(s) 297
BsuTUI ATCGAT 1 cut(s) 297
BtgZI GCGATG 1 cut(s) 242
BtsCI GGATG 1 cut(s) 10
CciI TCATGA 1 cut(s) 328
ClaI ATCGAT 1 cut(s) 297
Csp6I GTAC 1 cut(s) 19
CviAII CATG 1 cut(s) 329
CviJI RGCY 4 cut(s) 52, 129, 334, 344
CviKI_1 RGCY 4 cut(s) 52, 129, 334, 344
CviQI GTAC 1 cut(s) 19
DdeI CTNAG 1 cut(s) 282
DpnI GATC 2 cut(s) 218, 317
DpnII GATC 2 cut(s) 216, 315
Eam1104I CTCTTC 1 cut(s) 256
EarI CTCTTC 1 cut(s) 256
Ecl136II GAGCTC 2 cut(s) 334, 344
Eco24I GRGCYC 2 cut(s) 336, 346
Eco31I GGTCTC 1 cut(s) 64
Eco53kI GAGCTC 2 cut(s) 334, 344
EcoICRI GAGCTC 2 cut(s) 334, 344
EcoRI GAATTC 1 cut(s) 200
EcoT38I GRGCYC 2 cut(s) 336, 346
Esp3I CGTCTC 1 cut(s) 268
FaeI CATG 1 cut(s) 332
FaiI YATR 7 cut(s) 27, 29, 55, 126, 165, 330, 361
FatI CATG 1 cut(s) 328
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 2 cut(s) 336, 346
FspBI CTAG 1 cut(s) 110
Hin1II CATG 1 cut(s) 332
HinfI GANTC 4 cut(s) 8, 92, 244, 294
Hpy188I TCNGA 1 cut(s) 172
Hpy188III TCNNGA 4 cut(s) 104, 148, 158, 329
HpyAV CCTTC 2 cut(s) 42, 265
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4V TGCA 2 cut(s) 269, 308
HpyF3I CTNAG 1 cut(s) 282
Hsp92II CATG 1 cut(s) 332
Kzo9I GATC 2 cut(s) 216, 315
LmnI GCTCC 2 cut(s) 341, 349
LpnPI CCDG 3 cut(s) 29, 58, 117
LweI GCATC 1 cut(s) 214
MaeI CTAG 1 cut(s) 110
MaeIII GTNAC 1 cut(s) 89
MalI GATC 2 cut(s) 218, 317
MboI GATC 2 cut(s) 216, 315
MboII GAAGA 5 cut(s) 47, 50, 80, 243, 253
MhlI GDGCHC 2 cut(s) 336, 346
MluCI AATT 1 cut(s) 200
MlyI GAGTC 2 cut(s) 86, 238
MnlI CCTC 1 cut(s) 140
MroXI GAANNNNTTC 1 cut(s) 177
MseI TTAA 3 cut(s) 186, 194, 303
NdeII GATC 2 cut(s) 216, 315
NlaIII CATG 1 cut(s) 332
NmuCI GTSAC 1 cut(s) 89
PagI TCATGA 1 cut(s) 328
PdmI GAANNNNTTC 1 cut(s) 177
PfeI GAWTC 2 cut(s) 8, 294
PleI GAGTC 2 cut(s) 86, 238
PpsI GAGTC 2 cut(s) 86, 238
Psp124BI GAGCTC 2 cut(s) 336, 346
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
SacI GAGCTC 2 cut(s) 336, 346
SaqAI TTAA 3 cut(s) 186, 194, 303
Sau3AI GATC 2 cut(s) 216, 315
SchI GAGTC 2 cut(s) 86, 238
SduI GDGCHC 2 cut(s) 336, 346
SetI ASST 4 cut(s) 111, 326, 336, 346
SfaNI GCATC 1 cut(s) 214
Sse9I AATT 1 cut(s) 200
SsiI CCGC 1 cut(s) 133
SspMI CTAG 1 cut(s) 110
SstI GAGCTC 2 cut(s) 336, 346
TaaI ACNGT 1 cut(s) 154
TaqI TCGA 3 cut(s) 66, 292, 297
TasI AATT 1 cut(s) 200
TfiI GAWTC 2 cut(s) 8, 294
Tru1I TTAA 3 cut(s) 186, 194, 303
Tru9I TTAA 3 cut(s) 186, 194, 303
TseFI GTSAC 1 cut(s) 89
Tsp45I GTSAC 1 cut(s) 89
TspDTI ATGAA 3 cut(s) 44, 48, 317
TspGWI ACGGA 2 cut(s) 77, 328
XapI RAATTY 1 cut(s) 200
XmnI GAANNNNTTC 1 cut(s) 177
XspI CTAG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.