Rmu_sc0013240.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013240.1
OG0015776
Physical Location & Seq
Forward (+)
3480 .. 3872
393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013240.1_g000002.1.cds

Sequence Viewer

Length: 393 bp
atggatgattcgctccagtacgaatgtatgaataaagaagaccccagaagactgtgggtctcactcgaagaaagatttggcaacgtccgtgactccttgcttcctgacctagaagtgagatggcatagcctccgcttctgtgatttcaagtcagttcttgactataactcggaagcacttcgcattaaatccttaatggaattctgtggtaaagagatcacagatgcgatgttgattgagaagactctctctaccttccccgtctctgcattgatggttgctaagaactatcgaatcaatgtaaatgcaagacggatcacaagcagctgcaggtggcagcctttcaccgtaacacggccggcatcgacggcggaggacacggttccgttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

130

Amino Acids

15.19

Weight (kDa)

5.87

Isoelectric Point (pI)

69.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 321
Acc36I ACCTGC 1 cut(s) 321
AciI CCGC 2 cut(s) 133, 371
AclWI GGATC 1 cut(s) 323
AcoI YGGCCR 1 cut(s) 356
AcsI RAATTY 1 cut(s) 200
AfaI GTAC 1 cut(s) 20
AfiI CCNNNNNNNGG 1 cut(s) 354
AgsI TTSAA 1 cut(s) 148
AhdI GACNNNNNGTC 1 cut(s) 56
AjuI GAANNNNNNNTTGG 2 cut(s) 60, 92
AluBI AGCT 1 cut(s) 327
AluI AGCT 1 cut(s) 327
Alw26I GTCTC 2 cut(s) 64, 268
AlwI GGATC 1 cut(s) 323
AoxI GGCC 1 cut(s) 356
ApeKI GCWGC 3 cut(s) 324, 327, 337
ApoI RAATTY 1 cut(s) 200
Asp700I GAANNNNTTC 1 cut(s) 177
AsuHPI GGTGA 1 cut(s) 337
BbsI GAAGAC 3 cut(s) 45, 55, 248
BbvI GCAGC 3 cut(s) 314, 336, 349
BccI CCATC 2 cut(s) 114, 268
BceAI ACGGC 2 cut(s) 371, 384
BcoDI GTCTC 2 cut(s) 64, 268
BfaI CTAG 1 cut(s) 110
BfmI CTRYAG 1 cut(s) 328
BfuAI ACCTGC 1 cut(s) 321
BisI GCNGC 3 cut(s) 325, 328, 338
BlsI GCNGC 3 cut(s) 326, 329, 339
BmeRI GACNNNNNGTC 1 cut(s) 56
BmiI GGNNCC 1 cut(s) 384
BmsI GCATC 2 cut(s) 214, 371
BpiI GAAGAC 3 cut(s) 45, 55, 248
BsaI GGTCTC 1 cut(s) 64
Bsc4I CCNNNNNNNGG 1 cut(s) 354
Bse118I RCCGGY 1 cut(s) 358
Bse1I ACTGG 1 cut(s) 16
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 354
BseNI ACTGG 1 cut(s) 16
BseX3I CGGCCG 1 cut(s) 356
BseXI GCAGC 3 cut(s) 314, 336, 349
Bsh1285I CGRYCG 1 cut(s) 359
BshFI GGCC 1 cut(s) 358
BsiEI CGRYCG 1 cut(s) 359
BsiSI CCGG 1 cut(s) 359
BslI CCNNNNNNNGG 1 cut(s) 354
BsmAI GTCTC 2 cut(s) 64, 268
BsmBI CGTCTC 1 cut(s) 268
BsnI GGCC 1 cut(s) 358
Bso31I GGTCTC 1 cut(s) 64
Bsp143I GATC 2 cut(s) 216, 315
BspACI CCGC 2 cut(s) 133, 371
BspANI GGCC 1 cut(s) 358
BspLI GGNNCC 1 cut(s) 384
BspMAI CTGCAG 1 cut(s) 332
BspMI ACCTGC 1 cut(s) 321
BspPI GGATC 1 cut(s) 323
BspTNI GGTCTC 1 cut(s) 64
BsrFI RCCGGY 1 cut(s) 358
BsrI ACTGG 1 cut(s) 16
BssAI RCCGGY 1 cut(s) 358
BssMI GATC 2 cut(s) 216, 315
Bst4CI ACNGT 3 cut(s) 54, 349, 382
BstC8I GCNNGC 1 cut(s) 360
BstDEI CTNAG 1 cut(s) 282
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 2 cut(s) 219, 318
BstMAI GTCTC 2 cut(s) 64, 268
BstMBI GATC 2 cut(s) 216, 315
BstMCI CGRYCG 1 cut(s) 359
BstMWI GCNNNNNNNGC 1 cut(s) 368
BstSFI CTRYAG 1 cut(s) 328
BstV1I GCAGC 3 cut(s) 314, 336, 349
BstV2I GAAGAC 3 cut(s) 45, 55, 248
BstZI CGGCCG 1 cut(s) 356
BsuRI GGCC 1 cut(s) 358
BtgZI GCGATG 1 cut(s) 242
BtsCI GGATG 1 cut(s) 10
BveI ACCTGC 1 cut(s) 321
Cac8I GCNNGC 1 cut(s) 360
Cfr10I RCCGGY 1 cut(s) 358
Csp6I GTAC 1 cut(s) 19
CviJI RGCY 4 cut(s) 129, 327, 340, 358
CviKI_1 RGCY 4 cut(s) 129, 327, 340, 358
CviQI GTAC 1 cut(s) 19
DdeI CTNAG 1 cut(s) 282
DpnI GATC 2 cut(s) 218, 317
DpnII GATC 2 cut(s) 216, 315
DriI GACNNNNNGTC 1 cut(s) 56
EaeI YGGCCR 1 cut(s) 356
EagI CGGCCG 1 cut(s) 356
Eam1105I GACNNNNNGTC 1 cut(s) 56
EciI GGCGGA 1 cut(s) 386
EclXI CGGCCG 1 cut(s) 356
Eco31I GGTCTC 1 cut(s) 64
Eco52I CGGCCG 1 cut(s) 356
EcoRI GAATTC 1 cut(s) 200
Esp3I CGTCTC 1 cut(s) 268
FaiI YATR 3 cut(s) 29, 126, 165
Fnu4HI GCNGC 3 cut(s) 325, 328, 338
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 3 cut(s) 325, 328, 338
FspBI CTAG 1 cut(s) 110
GluI GCNGC 3 cut(s) 325, 328, 338
HaeIII GGCC 1 cut(s) 358
HapII CCGG 1 cut(s) 359
HinfI GANTC 4 cut(s) 8, 92, 244, 294
HpaII CCGG 1 cut(s) 359
HphI GGTGA 1 cut(s) 337
Hpy188I TCNGA 1 cut(s) 172
Hpy188III TCNNGA 2 cut(s) 104, 158
Hpy99I CGWCG 1 cut(s) 370
HpyAV CCTTC 1 cut(s) 265
HpyCH4III ACNGT 3 cut(s) 54, 349, 382
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 3 cut(s) 269, 308, 330
HpyF10VI GCNNNNNNNGC 1 cut(s) 368
HpyF3I CTNAG 1 cut(s) 282
HpySE526I ACGT 1 cut(s) 84
KroI GCCGGC 1 cut(s) 358
KroNI GCCGGC 1 cut(s) 360
Kzo9I GATC 2 cut(s) 216, 315
LmnI GCTCC 1 cut(s) 18
LpnPI CCDG 5 cut(s) 29, 58, 117, 316, 372
Lsp1109I GCAGC 3 cut(s) 314, 336, 349
LweI GCATC 2 cut(s) 214, 371
MaeI CTAG 1 cut(s) 110
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 2 cut(s) 89, 349
MalI GATC 2 cut(s) 218, 317
MboI GATC 2 cut(s) 216, 315
MboII GAAGA 4 cut(s) 50, 60, 80, 253
MluCI AATT 1 cut(s) 200
MlyI GAGTC 2 cut(s) 86, 238
MnlI CCTC 2 cut(s) 140, 367
MroNI GCCGGC 1 cut(s) 358
MroXI GAANNNNTTC 1 cut(s) 177
MseI TTAA 2 cut(s) 186, 194
MspA1I CMGCKG 1 cut(s) 327
MspI CCGG 1 cut(s) 359
MwoI GCNNNNNNNGC 1 cut(s) 368
NaeI GCCGGC 1 cut(s) 360
NdeII GATC 2 cut(s) 216, 315
NgoMIV GCCGGC 1 cut(s) 358
NlaIV GGNNCC 1 cut(s) 384
NmuCI GTSAC 1 cut(s) 89
PaqCI CACCTGC 1 cut(s) 321
PdiI GCCGGC 1 cut(s) 360
PdmI GAANNNNTTC 1 cut(s) 177
PfeI GAWTC 2 cut(s) 8, 294
PkrI GCNGC 3 cut(s) 326, 329, 339
PleI GAGTC 2 cut(s) 86, 238
PpsI GAGTC 2 cut(s) 86, 238
PspN4I GGNNCC 1 cut(s) 384
PstI CTGCAG 1 cut(s) 332
PvuII CAGCTG 1 cut(s) 327
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
SaqAI TTAA 2 cut(s) 186, 194
SatI GCNGC 3 cut(s) 325, 328, 338
Sau3AI GATC 2 cut(s) 216, 315
SchI GAGTC 2 cut(s) 86, 238
SetI ASST 5 cut(s) 87, 111, 257, 329, 335
SfaNI GCATC 2 cut(s) 214, 371
SfcI CTRYAG 1 cut(s) 328
Sse9I AATT 1 cut(s) 200
SsiI CCGC 2 cut(s) 133, 371
SspMI CTAG 1 cut(s) 110
TaaI ACNGT 3 cut(s) 54, 349, 382
TaiI ACGT 1 cut(s) 87
TaqI TCGA 3 cut(s) 66, 292, 365
TasI AATT 1 cut(s) 200
TfiI GAWTC 2 cut(s) 8, 294
Tru1I TTAA 2 cut(s) 186, 194
Tru9I TTAA 2 cut(s) 186, 194
TseFI GTSAC 1 cut(s) 89
TseI GCWGC 3 cut(s) 324, 327, 337
Tsp45I GTSAC 1 cut(s) 89
TspDTI ATGAA 1 cut(s) 44
TspGWI ACGGA 3 cut(s) 77, 328, 375
XapI RAATTY 1 cut(s) 200
XmnI GAANNNNTTC 1 cut(s) 177
XspI CTAG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.