Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005446.1

Orthogroup ID

OG0015776

Physical Location & Seq

Genomic Coordinates Reverse (-)

75545 .. 75913

Gene Structure 369 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005446.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

atgaatgaagaagaccccagaaggctatgggtctcactcggagaaagatttggcaacgtccgtaactccctgcttccttacccagaagtgagatggtatagcctccccttctgtgattttaagtcagttcttgactccaactcggaagcacttcaaattaaatccttaatggaatattgtggtaaagagatcacagatgcgatgttgattgagaagactctctctaccttccccatctctgcattgatggttgccaagaactatcgaatcgatgttactgcaggacagatcacaaggtttcatgagctcataggagctatgaatgtcgctgaaaagcatgacaacatccttgtgaagaactataattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotran_gag_2 zf-CCHC

Protein Analysis

122

Amino Acids

14.06

Weight (kDa)

5.67

Isoelectric Point (pI)

45.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015776)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000131.1_g000034 Rmu_sc0000133.1_g000033 Rmu_sc0000806.1_g000028 Rmu_sc0001464.1_g000015 Rmu_sc0002460.1_g000047 Rmu_sc0002914.1_g000022 Rmu_sc0005142.1_g000029 Rmu_sc0005446.1_g000022 Rmu_sc0007727.1_g000007 Rmu_sc0012995.1_g000002 Rmu_sc0013240.1_g000002 Rmu_ssc0000434.1_g000034 Rmu_ssc0000436.1_g000014
rosa_roxburghii	Rroxscaffold_1G00013370
rosa_samantha	Rh2BG200500 Rh6AG141400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	155
AluBI	AGCT	2 cut(s)	307, 317
AluI	AGCT	2 cut(s)	307, 317
Alw21I	GWGCWC	1 cut(s)	309
Alw26I	GTCTC	1 cut(s)	37
Asp700I	GAANNNNTTC	1 cut(s)	150
BanII	GRGCYC	1 cut(s)	309
BbsI	GAAGAC	2 cut(s)	18, 221
Bbv12I	GWGCWC	1 cut(s)	309
BccI	CCATC	3 cut(s)	87, 241, 242
BcgI	CGANNNNNNTGC	2 cut(s)	260, 294
BcoDI	GTCTC	1 cut(s)	37
BfmI	CTRYAG	1 cut(s)	279
BmsI	GCATC	1 cut(s)	187
BpiI	GAAGAC	2 cut(s)	18, 221
Bsa29I	ATCGAT	1 cut(s)	270
BsaI	GGTCTC	1 cut(s)	37
BseCI	ATCGAT	1 cut(s)	270
BseGI	GGATG	1 cut(s)	345
BshVI	ATCGAT	1 cut(s)	270
BsiHKAI	GWGCWC	1 cut(s)	309
BsmAI	GTCTC	1 cut(s)	37
Bso31I	GGTCTC	1 cut(s)	37
Bsp1286I	GDGCHC	1 cut(s)	309
Bsp143I	GATC	2 cut(s)	189, 288
BspDI	ATCGAT	1 cut(s)	270
BspHI	TCATGA	1 cut(s)	301
BspMAI	CTGCAG	1 cut(s)	283
BspTNI	GGTCTC	1 cut(s)	37
BssMI	GATC	2 cut(s)	189, 288
BstF5I	GGATG	1 cut(s)	345
BstKTI	GATC	2 cut(s)	192, 291
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	2 cut(s)	189, 288
BstSFI	CTRYAG	1 cut(s)	279
BstV2I	GAAGAC	2 cut(s)	18, 221
Bsu15I	ATCGAT	1 cut(s)	270
BsuTUI	ATCGAT	1 cut(s)	270
BtgZI	GCGATG	1 cut(s)	215
BtsCI	GGATG	1 cut(s)	345
CciI	TCATGA	1 cut(s)	301
ClaI	ATCGAT	1 cut(s)	270
CviAII	CATG	2 cut(s)	302, 338
CviJI	RGCY	4 cut(s)	25, 102, 307, 317
CviKI_1	RGCY	4 cut(s)	25, 102, 307, 317
DpnI	GATC	2 cut(s)	191, 290
DpnII	GATC	2 cut(s)	189, 288
Ecl136II	GAGCTC	1 cut(s)	307
Eco24I	GRGCYC	1 cut(s)	309
Eco31I	GGTCTC	1 cut(s)	37
Eco53kI	GAGCTC	1 cut(s)	307
EcoICRI	GAGCTC	1 cut(s)	307
EcoT38I	GRGCYC	1 cut(s)	309
FaeI	CATG	2 cut(s)	305, 341
FaiI	YATR	7 cut(s)	28, 99, 303, 311, 320, 339, 363
FatI	CATG	2 cut(s)	301, 337
FokI	GGATG	1 cut(s)	332
FriOI	GRGCYC	1 cut(s)	309
Hin1II	CATG	2 cut(s)	305, 341
HinfI	GANTC	3 cut(s)	134, 217, 267
Hpy188I	TCNGA	2 cut(s)	41, 145
Hpy188III	TCNNGA	2 cut(s)	131, 302
HpyAV	CCTTC	3 cut(s)	15, 118, 238
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	2 cut(s)	242, 281
HpySE526I	ACGT	1 cut(s)	57
Hsp92II	CATG	2 cut(s)	305, 341
Kzo9I	GATC	2 cut(s)	189, 288
LmnI	GCTCC	1 cut(s)	314
LpnPI	CCDG	4 cut(s)	31, 83, 96, 267
LweI	GCATC	1 cut(s)	187
MaeII	ACGT	1 cut(s)	57
MaeIII	GTNAC	2 cut(s)	62, 274
MalI	GATC	2 cut(s)	191, 290
MboI	GATC	2 cut(s)	189, 288
MboII	GAAGA	4 cut(s)	20, 23, 226, 367
MhlI	GDGCHC	1 cut(s)	309
MluCI	AATT	2 cut(s)	156, 364
MlyI	GAGTC	2 cut(s)	128, 211
MmeI	TCCRAC	1 cut(s)	162
MnlI	CCTC	1 cut(s)	113
MroXI	GAANNNNTTC	1 cut(s)	150
MseI	TTAA	4 cut(s)	120, 159, 167, 367
MslI	CAYNNNNRTG	1 cut(s)	350
NdeII	GATC	2 cut(s)	189, 288
NlaIII	CATG	2 cut(s)	305, 341
PagI	TCATGA	1 cut(s)	301
PdmI	GAANNNNTTC	1 cut(s)	150
PfeI	GAWTC	1 cut(s)	267
PleI	GAGTC	2 cut(s)	128, 211
PpsI	GAGTC	2 cut(s)	128, 211
Psp124BI	GAGCTC	1 cut(s)	309
PstI	CTGCAG	1 cut(s)	283
RseI	CAYNNNNRTG	1 cut(s)	350
SacI	GAGCTC	1 cut(s)	309
SaqAI	TTAA	4 cut(s)	120, 159, 167, 367
Sau3AI	GATC	2 cut(s)	189, 288
SchI	GAGTC	2 cut(s)	128, 211
SduI	GDGCHC	1 cut(s)	309
SetI	ASST	5 cut(s)	60, 230, 299, 309, 319
SfaNI	GCATC	1 cut(s)	187
SfcI	CTRYAG	1 cut(s)	279
SmiMI	CAYNNNNRTG	1 cut(s)	350
Sse9I	AATT	2 cut(s)	156, 364
SspI	AATATT	1 cut(s)	176
SstI	GAGCTC	1 cut(s)	309
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	2 cut(s)	265, 270
TasI	AATT	2 cut(s)	156, 364
TfiI	GAWTC	1 cut(s)	267
Tru1I	TTAA	4 cut(s)	120, 159, 167, 367
Tru9I	TTAA	4 cut(s)	120, 159, 167, 367
TspDTI	ATGAA	4 cut(s)	17, 21, 290, 335
TspGWI	ACGGA	1 cut(s)	50
XcmI	CCANNNNNNNNNTGG	1 cut(s)	90
XmnI	GAANNNNTTC	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.