Rmu_sc0002460.1_g000047

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002460.1
OG0015776
Physical Location & Seq
Forward (+)
206168 .. 207325
1158 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002460.1_g000047.1.cds

Sequence Viewer

Length: 420 bp
atggatgattcgctccagtacgagtatatgaatgaagaagaccccagaaggctgtgggtctcactcgaagaaagatttggcaacgtccgtgactccttgcttcctgacctagaagtgagatggcatagcctccgcttctgtgatttcaagtcagttcttgactataactcggaagcacttcgcattaaatccttaatggaattctgtggtaaagagatcacagatgcgatgttgattgagaagactctctctaccttccccgtctctgcattgatggttgctaagaactatcgaatcgatgtaaatgcaagacggatcacaagagctcgtgaagaacttgtcaccgcctacaaagcatattgtgaagcaagagaagctcactatgtggaacaagaagatcaagaagatgatctagagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

139

Amino Acids

16.53

Weight (kDa)

4.71

Isoelectric Point (pI)

58.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 133, 345
AclWI GGATC 1 cut(s) 323
AcsI RAATTY 1 cut(s) 200
AdeI CACNNNGTG 1 cut(s) 385
AfaI GTAC 1 cut(s) 20
AgsI TTSAA 1 cut(s) 148
AjuI GAANNNNNNNTTGG 2 cut(s) 60, 92
AluBI AGCT 2 cut(s) 326, 377
AluI AGCT 2 cut(s) 326, 377
Alw21I GWGCWC 1 cut(s) 328
Alw26I GTCTC 2 cut(s) 64, 268
AlwI GGATC 1 cut(s) 323
ApoI RAATTY 1 cut(s) 200
Asp700I GAANNNNTTC 1 cut(s) 177
AsuHPI GGTGA 1 cut(s) 334
BanII GRGCYC 1 cut(s) 328
BauI CACGAG 1 cut(s) 327
BbsI GAAGAC 2 cut(s) 45, 248
Bbv12I GWGCWC 1 cut(s) 328
BccI CCATC 2 cut(s) 114, 268
BcgI CGANNNNNNTGC 2 cut(s) 287, 321
BcoDI GTCTC 2 cut(s) 64, 268
BfaI CTAG 2 cut(s) 110, 413
BmsI GCATC 1 cut(s) 214
BpiI GAAGAC 2 cut(s) 45, 248
Bsa29I ATCGAT 1 cut(s) 297
BsaI GGTCTC 1 cut(s) 64
Bse1I ACTGG 1 cut(s) 16
BseCI ATCGAT 1 cut(s) 297
BseGI GGATG 1 cut(s) 10
BseNI ACTGG 1 cut(s) 16
BshVI ATCGAT 1 cut(s) 297
BsiHKAI GWGCWC 1 cut(s) 328
BsmAI GTCTC 2 cut(s) 64, 268
BsmBI CGTCTC 1 cut(s) 268
Bso31I GGTCTC 1 cut(s) 64
Bsp1286I GDGCHC 1 cut(s) 328
Bsp143I GATC 4 cut(s) 216, 315, 397, 409
BspACI CCGC 2 cut(s) 133, 345
BspDI ATCGAT 1 cut(s) 297
BspPI GGATC 1 cut(s) 323
BspTNI GGTCTC 1 cut(s) 64
BsrI ACTGG 1 cut(s) 16
BssMI GATC 4 cut(s) 216, 315, 397, 409
BssSI CACGAG 1 cut(s) 327
Bst2BI CACGAG 1 cut(s) 327
BstDEI CTNAG 1 cut(s) 282
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 4 cut(s) 219, 318, 400, 412
BstMAI GTCTC 2 cut(s) 64, 268
BstMBI GATC 4 cut(s) 216, 315, 397, 409
BstMWI GCNNNNNNNGC 2 cut(s) 353, 374
BstV2I GAAGAC 2 cut(s) 45, 248
Bsu15I ATCGAT 1 cut(s) 297
BsuTUI ATCGAT 1 cut(s) 297
BtgZI GCGATG 1 cut(s) 242
BtsCI GGATG 1 cut(s) 10
ClaI ATCGAT 1 cut(s) 297
Csp6I GTAC 1 cut(s) 19
CviJI RGCY 4 cut(s) 52, 129, 326, 377
CviKI_1 RGCY 4 cut(s) 52, 129, 326, 377
CviQI GTAC 1 cut(s) 19
DdeI CTNAG 1 cut(s) 282
DpnI GATC 4 cut(s) 218, 317, 399, 411
DpnII GATC 4 cut(s) 216, 315, 397, 409
DraIII CACNNNGTG 1 cut(s) 385
Ecl136II GAGCTC 1 cut(s) 326
Eco24I GRGCYC 1 cut(s) 328
Eco31I GGTCTC 1 cut(s) 64
Eco53kI GAGCTC 1 cut(s) 326
EcoICRI GAGCTC 1 cut(s) 326
EcoRI GAATTC 1 cut(s) 200
EcoT38I GRGCYC 1 cut(s) 328
Esp3I CGTCTC 1 cut(s) 268
FaiI YATR 6 cut(s) 27, 29, 126, 165, 358, 384
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 328
FspBI CTAG 2 cut(s) 110, 413
HinfI GANTC 4 cut(s) 8, 92, 244, 294
HphI GGTGA 1 cut(s) 334
Hpy188I TCNGA 1 cut(s) 172
Hpy188III TCNNGA 5 cut(s) 104, 158, 329, 401, 413
HpyAV CCTTC 2 cut(s) 42, 265
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 2 cut(s) 269, 308
HpyF10VI GCNNNNNNNGC 2 cut(s) 353, 374
HpyF3I CTNAG 1 cut(s) 282
HpySE526I ACGT 1 cut(s) 84
Kzo9I GATC 4 cut(s) 216, 315, 397, 409
LmnI GCTCC 1 cut(s) 18
LpnPI CCDG 3 cut(s) 29, 58, 117
LweI GCATC 1 cut(s) 214
MaeI CTAG 2 cut(s) 110, 413
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 2 cut(s) 89, 340
MalI GATC 4 cut(s) 218, 317, 399, 411
MboI GATC 4 cut(s) 216, 315, 397, 409
MboII GAAGA 7 cut(s) 47, 50, 80, 253, 344, 407, 416
MhlI GDGCHC 1 cut(s) 328
MluCI AATT 1 cut(s) 200
MlyI GAGTC 2 cut(s) 86, 238
MnlI CCTC 1 cut(s) 140
MroXI GAANNNNTTC 1 cut(s) 177
MseI TTAA 2 cut(s) 186, 194
MwoI GCNNNNNNNGC 2 cut(s) 353, 374
NdeII GATC 4 cut(s) 216, 315, 397, 409
NmuCI GTSAC 2 cut(s) 89, 340
PdmI GAANNNNTTC 1 cut(s) 177
PfeI GAWTC 2 cut(s) 8, 294
PleI GAGTC 2 cut(s) 86, 238
PpsI GAGTC 2 cut(s) 86, 238
Psp124BI GAGCTC 1 cut(s) 328
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
SacI GAGCTC 1 cut(s) 328
SaqAI TTAA 2 cut(s) 186, 194
Sau3AI GATC 4 cut(s) 216, 315, 397, 409
SchI GAGTC 2 cut(s) 86, 238
SduI GDGCHC 1 cut(s) 328
SetI ASST 5 cut(s) 87, 111, 257, 328, 379
SfaNI GCATC 1 cut(s) 214
Sse9I AATT 1 cut(s) 200
SsiI CCGC 2 cut(s) 133, 345
SspMI CTAG 2 cut(s) 110, 413
SstI GAGCTC 1 cut(s) 328
TaiI ACGT 1 cut(s) 87
TaqI TCGA 3 cut(s) 66, 292, 297
TasI AATT 1 cut(s) 200
TfiI GAWTC 2 cut(s) 8, 294
Tru1I TTAA 2 cut(s) 186, 194
Tru9I TTAA 2 cut(s) 186, 194
TseFI GTSAC 2 cut(s) 89, 340
Tsp45I GTSAC 2 cut(s) 89, 340
TspDTI ATGAA 2 cut(s) 44, 48
TspGWI ACGGA 2 cut(s) 77, 328
XapI RAATTY 1 cut(s) 200
XbaI TCTAGA 1 cut(s) 412
XmnI GAANNNNTTC 1 cut(s) 177
XspI CTAG 2 cut(s) 110, 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.