Rmu_sc0000184.1_g000010

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000184.1
OG0005875
Physical Location & Seq
Forward (+)
33245 .. 39176
5932 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 759 bp
atgacttgtacaccaacccatttagcgtcatttcattctactccagcttcatgtgagaagtggaaggacaaatggaactttgatgtgaagagttcagaacaaccatcaaagaatttcgtcagatatgcaacacgtcacaagcgagctgatgcaaagaaagcccttaaaaatcttctcttcaacagcggatactcccctaaactctcatatcagcacattcaggaagaagatgattcaggtagctctcctaaaacaggtagctctcctaaaaatcatagatcaaaatcttgtcgacatgctcagaaatcccaccacaagaaaatgaaacgcaagctcaaacgagagagtttctctgatgatgaaaaccatcctgagacaatctttcaggcaacatatggcaagagatggtacacttggtcttttaacgcacagcgcgactcttttcatgattcagcatctggatttgattggagagagccttcaagctggaaagatagaagtacaagatgggaaaacattagtgatgtagagtctgatgatgaacaatgtaccataggatcatgttccgatagaaaaattcttggcctcccttcaacaggtcctttaaagaccgaagatgttaaaaaagctttccatttatcagctttaaaatggcatcctgacaagcatcaaggatcttcacaggaaatggcagcagagaaatttagactttgtgttaatgcttacaattctctgtgcaatgcattatctgcaacgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

252

Amino Acids

28.94

Weight (kDa)

9.28

Isoelectric Point (pI)

59.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 192 - 247 1.5e-08 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 292
AccII CGCG 1 cut(s) 435
AciI CCGC 1 cut(s) 186
AclWI GGATC 2 cut(s) 565, 682
AcsI RAATTY 3 cut(s) 112, 576, 701
AfaI GTAC 4 cut(s) 10, 410, 502, 550
AfiI CCNNNNNNNGG 2 cut(s) 254, 596
AflIII ACRYGT 1 cut(s) 131
AgsI TTSAA 3 cut(s) 181, 483, 594
AjiI CACGTC 1 cut(s) 134
AluBI AGCT 8 cut(s) 47, 146, 243, 261, 334, 486, 629, 644
AluI AGCT 8 cut(s) 47, 146, 243, 261, 334, 486, 629, 644
Alw26I GTCTC 1 cut(s) 368
AlwI GGATC 2 cut(s) 565, 682
AlwNI CAGNNNCTG 1 cut(s) 458
AoxI GGCC 1 cut(s) 583
ApeKI GCWGC 1 cut(s) 692
ApoI RAATTY 3 cut(s) 112, 576, 701
AspLEI GCGC 1 cut(s) 435
AspS9I GGNCC 1 cut(s) 599
AvaII GGWCC 1 cut(s) 599
BbvI GCAGC 1 cut(s) 704
BccI CCATC 4 cut(s) 112, 375, 399, 501
BciVI GTATCC 1 cut(s) 182
BcoDI GTCTC 1 cut(s) 368
BfuI GTATCC 1 cut(s) 182
BisI GCNGC 1 cut(s) 693
BlsI GCNGC 1 cut(s) 694
Bme18I GGWCC 1 cut(s) 599
BmgBI CACGTC 1 cut(s) 134
BmgT120I GGNCC 1 cut(s) 599
BmsI GCATC 4 cut(s) 139, 464, 664, 676
BplI GAGNNNNNCTC 2 cut(s) 335, 367
BpmI CTGGAG 1 cut(s) 27
BsaBI GATNNNNATC 1 cut(s) 283
Bsc4I CCNNNNNNNGG 2 cut(s) 254, 596
Bse3DI GCAATG 1 cut(s) 745
Bse8I GATNNNNATC 1 cut(s) 283
BseGI GGATG 2 cut(s) 367, 655
BseJI GATNNNNATC 1 cut(s) 283
BseLI CCNNNNNNNGG 2 cut(s) 254, 596
BseMI GCAATG 1 cut(s) 745
BseMII CTCAG 2 cut(s) 314, 363
BseXI GCAGC 1 cut(s) 704
Bsh1236I CGCG 1 cut(s) 435
BshFI GGCC 1 cut(s) 585
BslI CCNNNNNNNGG 2 cut(s) 254, 596
BsmAI GTCTC 1 cut(s) 368
BsnI GGCC 1 cut(s) 585
Bsp1407I TGTACA 1 cut(s) 8
Bsp143I GATC 3 cut(s) 278, 557, 674
BspACI CCGC 1 cut(s) 186
BspANI GGCC 1 cut(s) 585
BspCNI CTCAG 2 cut(s) 313, 364
BspFNI CGCG 1 cut(s) 435
BspHI TCATGA 1 cut(s) 445
BspPI GGATC 2 cut(s) 565, 682
BsrDI GCAATG 1 cut(s) 745
BsrGI TGTACA 1 cut(s) 8
BssMI GATC 3 cut(s) 278, 557, 674
Bst6I CTCTTC 2 cut(s) 83, 182
BstAPI GCANNNNNTGC 1 cut(s) 749
BstAUI TGTACA 1 cut(s) 8
BstC8I GCNNGC 2 cut(s) 144, 332
BstDEI CTNAG 2 cut(s) 300, 372
BstENI CCTNNNNNAGG 2 cut(s) 252, 594
BstF5I GGATG 2 cut(s) 367, 655
BstFNI CGCG 1 cut(s) 435
BstHHI GCGC 1 cut(s) 435
BstKTI GATC 3 cut(s) 281, 560, 677
BstMAI GTCTC 1 cut(s) 368
BstMBI GATC 3 cut(s) 278, 557, 674
BstMWI GCNNNNNNNGC 2 cut(s) 158, 749
BstNSI RCATGY 1 cut(s) 299
BstUI CGCG 1 cut(s) 435
BstV1I GCAGC 1 cut(s) 704
BstX2I RGATCY 1 cut(s) 674
BstYI RGATCY 1 cut(s) 674
BsuI GTATCC 1 cut(s) 182
BsuRI GGCC 1 cut(s) 585
BtrI CACGTC 1 cut(s) 134
BtsCI GGATG 2 cut(s) 367, 655
Cac8I GCNNGC 2 cut(s) 144, 332
CaiI CAGNNNCTG 1 cut(s) 458
CciI TCATGA 1 cut(s) 445
CfoI GCGC 1 cut(s) 435
Cfr13I GGNCC 1 cut(s) 599
CseI GACGC 1 cut(s) 15
Csp6I GTAC 4 cut(s) 9, 409, 501, 549
CviAII CATG 4 cut(s) 51, 296, 446, 561
CviQI GTAC 4 cut(s) 9, 409, 501, 549
DdeI CTNAG 2 cut(s) 300, 372
DpnI GATC 3 cut(s) 280, 559, 676
DpnII GATC 3 cut(s) 278, 557, 674
DraI TTTAAA 2 cut(s) 606, 648
Eam1104I CTCTTC 2 cut(s) 83, 182
EarI CTCTTC 2 cut(s) 83, 182
Eco47I GGWCC 1 cut(s) 599
EcoNI CCTNNNNNAGG 2 cut(s) 252, 594
EcoO109I RGGNCCY 1 cut(s) 599
EcoT22I ATGCAT 1 cut(s) 745
FaeI CATG 4 cut(s) 54, 299, 449, 564
FatI CATG 4 cut(s) 50, 295, 445, 560
FauNDI CATATG 1 cut(s) 394
FblI GTMKAC 1 cut(s) 292
Fnu4HI GCNGC 1 cut(s) 693
FokI GGATG 2 cut(s) 354, 642
Fsp4HI GCNGC 1 cut(s) 693
GlaI GCGC 1 cut(s) 434
GluI GCNGC 1 cut(s) 693
GsuI CTGGAG 1 cut(s) 27
HaeIII GGCC 1 cut(s) 585
HgaI GACGC 1 cut(s) 15
HhaI GCGC 1 cut(s) 435
Hin1II CATG 4 cut(s) 54, 299, 449, 564
Hin6I GCGC 1 cut(s) 433
HinP1I GCGC 1 cut(s) 433
HincII GTYRAC 1 cut(s) 293
HindII GTYRAC 1 cut(s) 293
HindIII AAGCTT 1 cut(s) 627
HinfI GANTC 4 cut(s) 233, 437, 449, 530
Hpy166II GTNNAC 3 cut(s) 11, 293, 411
Hpy188I TCNGA 6 cut(s) 97, 122, 303, 355, 535, 568
Hpy188III TCNNGA 5 cut(s) 221, 371, 446, 459, 659
Hpy8I GTNNAC 3 cut(s) 11, 293, 411
HpyAV CCTTC 3 cut(s) 58, 489, 600
HpyCH4IV ACGT 2 cut(s) 133, 755
HpyCH4V TGCA 5 cut(s) 128, 152, 738, 743, 752
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 749
HpyF3I CTNAG 2 cut(s) 300, 372
HpySE526I ACGT 2 cut(s) 133, 755
Hsp92II CATG 4 cut(s) 54, 299, 449, 564
HspAI GCGC 1 cut(s) 433
Kzo9I GATC 3 cut(s) 278, 557, 674
Lsp1109I GCAGC 1 cut(s) 704
LweI GCATC 4 cut(s) 139, 464, 664, 676
MaeII ACGT 2 cut(s) 133, 755
MaeIII GTNAC 1 cut(s) 134
MalI GATC 3 cut(s) 280, 559, 676
MboI GATC 3 cut(s) 278, 557, 674
MboII GAAGA 7 cut(s) 100, 164, 169, 236, 239, 626, 669
MflI RGATCY 1 cut(s) 674
MluCI AATT 4 cut(s) 112, 576, 701, 727
MlyI GAGTC 2 cut(s) 431, 539
MnlI CCTC 1 cut(s) 596
Mph1103I ATGCAT 1 cut(s) 745
MseI TTAA 6 cut(s) 165, 423, 605, 621, 647, 717
MspA1I CMGCKG 1 cut(s) 186
MvnI CGCG 1 cut(s) 435
MwoI GCNNNNNNNGC 2 cut(s) 158, 749
NdeI CATATG 1 cut(s) 394
NdeII GATC 3 cut(s) 278, 557, 674
NlaIII CATG 4 cut(s) 54, 299, 449, 564
NmuCI GTSAC 1 cut(s) 134
NsiI ATGCAT 1 cut(s) 745
NspI RCATGY 1 cut(s) 299
PagI TCATGA 1 cut(s) 445
PcsI WCGNNNNNNNCGW 2 cut(s) 139, 432
PfeI GAWTC 2 cut(s) 233, 449
PkrI GCNGC 1 cut(s) 694
PleI GAGTC 2 cut(s) 431, 538
PpsI GAGTC 2 cut(s) 431, 538
PpuMI RGGWCCY 1 cut(s) 599
Psp5II RGGWCCY 1 cut(s) 599
PspPI GGNCC 1 cut(s) 599
PspPPI RGGWCCY 1 cut(s) 599
PstNI CAGNNNCTG 1 cut(s) 458
PsuI RGATCY 1 cut(s) 674
RsaI GTAC 4 cut(s) 10, 410, 502, 550
RsaNI GTAC 4 cut(s) 9, 409, 501, 549
SalI GTCGAC 1 cut(s) 291
SaqAI TTAA 6 cut(s) 165, 423, 605, 621, 647, 717
SatI GCNGC 1 cut(s) 693
Sau3AI GATC 3 cut(s) 278, 557, 674
Sau96I GGNCC 1 cut(s) 599
SchI GAGTC 2 cut(s) 431, 539
SfaNI GCATC 4 cut(s) 139, 464, 664, 676
SinI GGWCC 1 cut(s) 599
Sse9I AATT 4 cut(s) 112, 576, 701, 727
SsiI CCGC 1 cut(s) 186
TaiI ACGT 2 cut(s) 136, 758
TaqI TCGA 1 cut(s) 292
TaqII GACCGA 1 cut(s) 626
TasI AATT 4 cut(s) 112, 576, 701, 727
TatI WGTACW 2 cut(s) 8, 500
TfiI GAWTC 2 cut(s) 233, 449
Tru1I TTAA 6 cut(s) 165, 423, 605, 621, 647, 717
Tru9I TTAA 6 cut(s) 165, 423, 605, 621, 647, 717
TseFI GTSAC 1 cut(s) 134
TseI GCWGC 1 cut(s) 692
Tsp45I GTSAC 1 cut(s) 134
TspDTI ATGAA 6 cut(s) 23, 39, 338, 375, 434, 555
VpaK11BI GGWCC 1 cut(s) 599
XagI CCTNNNNNAGG 2 cut(s) 252, 594
XapI RAATTY 3 cut(s) 112, 576, 701
XceI RCATGY 1 cut(s) 299
XmiI GTMKAC 1 cut(s) 292
Zsp2I ATGCAT 1 cut(s) 745
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.