Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000283.1

Orthogroup ID

OG0013120

Physical Location & Seq

Genomic Coordinates Reverse (-)

36915 .. 41313

Gene Structure 4399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1770 bp

atgcaaagcgggttgtgccactctttcacattattggccgtcaataatatgagttgctcaaccacggtggctatagggaactcagtattcccgccaaattcaaacacaaaatccagaaattcccaaaatcggagagaagtcatctccctgttgcagaaatgcaaacactatcagatcccacaaatacatgctaaaataataagaaatggccaggaccaagacccattcgtcgtcttcgagcttcttcgtctctgctccaacctcaactccattgactatgcctccaaggttttcctacgcacccaatccccaaacgtgtatctctacactgctctcattgatgggtttgtgtcgtctggctattaccttgatgggattcgtctttactgtcagatggtcaatgagtttatatttccggacaaatatgccatcacttctgtgttgaaagcttgtggctttgggttggctttggaggagggcagagaagtccatgcccaggctttgaagcttgggttgtcctcgaatagatcaataaggatgaagctgatgggtctttatgggaagtgtggtgaatttgaaagtgcacgccatgtgtttgatgaaatgcctgaaggggatgcagttgcggcaaccgtcatgataacttgttatgctgagtatggactagttgaggaggcgagtggtgtttttaaccggctcagggaaaaggatacggtttgctggactgcgatgattgatgggttggttaagaatggggagatgaatagggctttggaggtgtttagggatatgcagaggaagaatgtgaggcctaatgaagttacattggtttgtgttctgtctgcttgttcgcatttgggagctttggagctcggacgatgggtttgctcgtatatagataagaataacattgaatgcaattacattgtgggtggtgctctgattaatatgtattcaaggtgtggtgatattgatggggcagtagaagtgtttagcaggatgagagagagagatgtcagtacctataattccatgattgaggggcttgctatgcatgggaagagcaccatggctattgaaatgttccgggaaatgatgaaacgaggacttaagccaaatagcattacttttataattaagtgcttctcggatcctcaatactacttccaagtgaatgcgcactatgtcaggaacaaactgaagataattctatttccatttcttcacaggggacactggaccaggataacagagccaattggaggcaggctttcctataatcctccaattaatgatataaatgctccagatttatacattccattcatgacatttgcgacatacttggttcttgctggcatctctctcggcctttctgggaaatttagtccagaagccttaaattggcagtttgtgaaaggaatggcaagctggttattccaagcaatgttgttgaaggcatcattgacttcgctaggcggtggagaggcaccattgttggacatgatagcatatgcagggtatacattcacggggctgtgtgtggctgttgtagggagaattacattaagctatgcgtactacttgatagtcatatggacatccatgtgctcaggcatcttcttggctaagacgattaagctaactttgtatgccgaggctaggagttacgatgtcaccatccacaactatctcttgcttggtattgcattttctccattcccattcatcttctgcctgagcaaccctaccgggaattggatttcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

589

Amino Acids

66.07

Weight (kDa)

8.51

Isoelectric Point (pI)

37.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	104 - 151	4.6e-07	PPR repeat family
PPR_2	PF13041	236 - 284	3.1e-14	PPR repeat family
PPR_1	PF12854	237 - 265	1e-05	PPR repeat
PPR	PF01535	239 - 269	1.7e-08	PPR repeat
PPR_2	PF13041	337 - 379	2.7e-12	PPR repeat family
PPR_3	PF13812	338 - 377	3.5e-06	Pentatricopeptide repeat domain
PPR	PF01535	340 - 370	9.7e-08	PPR repeat
YIF1	PF03878	356 - 558	1.1e-46	YIF1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59200
fragaria_vesca	FvH4_2g17580
malus_domestica	MD10G1149200.v1.1 MD10G1149700.v1.1
prunus_persica	Prupe.8G188000_v2.0.a1
pyrus_communis	pycom10g12880 pycom10g12910
rosa_chinensis	RchiOBHm_Chr6g0282521
rosa_laevigata	RLG00000012888
rosa_multiflora	Rmu_sc0000283.1_g000009 Rmu_sc0000283.1_g000011 Rmu_sc0000283.1_g000012 Rmu_sc0005697.1_g000029
rosa_rugosa	Rorug06G0147100 Rorug06G0147200
rosa_samantha	Rh6CG262700 Rh6DG254600
rosa_wichuraiana	Rw6G022520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1133
AasI	GACNNNNNNGTC	1 cut(s)	227
Acc16I	TGCGCA	1 cut(s)	1179
AccB1I	GGYRCC	1 cut(s)	1489
AccI	GTMKAC	1 cut(s)	1523
AccIII	TCCGGA	1 cut(s)	415
AciI	CCGC	4 cut(s)	9, 92, 626, 1479
AclWI	GGATC	3 cut(s)	169, 1145, 1158
AcoI	YGGCCR	2 cut(s)	36, 208
AcsI	RAATTY	4 cut(s)	97, 118, 572, 1382
AcuI	CTGAAG	2 cut(s)	630, 1220
AfaI	GTAC	2 cut(s)	1021, 1580
AfiI	CCNNNNNNNGG	7 cut(s)	129, 496, 700, 1262, 1404, 1662, 1758
AflII	CTTAAG	1 cut(s)	1109
AflIII	ACRYGT	1 cut(s)	315
AgsI	TTSAA	8 cut(s)	102, 445, 505, 578, 914, 957, 1079, 1456
AhlI	ACTAGT	1 cut(s)	664
AjnI	CCWGG	3 cut(s)	210, 495, 1241
AjuI	GAANNNNNNNTTGG	2 cut(s)	755, 787
AleI	CACNNNNGTG	1 cut(s)	437
AluBI	AGCT	9 cut(s)	241, 449, 508, 544, 863, 871, 1431, 1572, 1642
AluI	AGCT	9 cut(s)	241, 449, 508, 544, 863, 871, 1431, 1572, 1642
Alw21I	GWGCWC	5 cut(s)	586, 873, 940, 1067, 1613
Alw26I	GTCTC	1 cut(s)	254
Alw44I	GTGCAC	1 cut(s)	582
AlwI	GGATC	3 cut(s)	169, 1145, 1158
Aor13HI	TCCGGA	1 cut(s)	415
AoxI	GGCC	4 cut(s)	36, 208, 809, 1369
ApaLI	GTGCAC	1 cut(s)	582
ApoI	RAATTY	4 cut(s)	97, 118, 572, 1382
ArsI	GACNNNNNNTTYG	2 cut(s)	867, 899
AseI	ATTAAT	2 cut(s)	945, 1290
AspLEI	GCGC	1 cut(s)	1180
AspS9I	GGNCC	2 cut(s)	214, 1239
AsuC2I	CCSGG	2 cut(s)	1088, 1753
AsuHPI	GGTGA	3 cut(s)	581, 977, 1669
AvaII	GGWCC	2 cut(s)	214, 1239
BaeGI	GKGCMC	1 cut(s)	586
BalI	TGGCCA	1 cut(s)	210
BamHI	GGATCC	1 cut(s)	1150
BanI	GGYRCC	1 cut(s)	1489
BanII	GRGCYC	1 cut(s)	873
BbsI	GAAGAC	1 cut(s)	226
Bbv12I	GWGCWC	5 cut(s)	586, 873, 940, 1067, 1613
BccI	CCATC	9 cut(s)	335, 365, 388, 437, 541, 731, 873, 968, 1688
BceAI	ACGGC	1 cut(s)	23
BcgI	CGANNNNNNTGC	4 cut(s)	867, 901, 1348, 1382
BciT130I	CCWGG	3 cut(s)	212, 497, 1243
BciVI	GTATCC	1 cut(s)	703
BcnI	CCSGG	2 cut(s)	1088, 1753
BcoDI	GTCTC	1 cut(s)	254
BcuI	ACTAGT	1 cut(s)	664
BfaI	CTAG	3 cut(s)	665, 1475, 1662
BfmI	CTRYAG	1 cut(s)	72
BfrI	CTTAAG	1 cut(s)	1109
BfuI	GTATCC	1 cut(s)	703
BisI	GCNGC	1 cut(s)	627
BlsI	GCNGC	1 cut(s)	628
Bme1390I	CCNGG	5 cut(s)	212, 497, 1088, 1243, 1753
Bme18I	GGWCC	2 cut(s)	214, 1239
BmgT120I	GGNCC	2 cut(s)	214, 1239
BmiI	GGNNCC	2 cut(s)	1152, 1491
BmrFI	CCNGG	5 cut(s)	212, 497, 1088, 1243, 1753
BmsI	GCATC	4 cut(s)	607, 1368, 1469, 1626
BpiI	GAAGAC	1 cut(s)	226
BpmI	CTGGAG	1 cut(s)	1290
Bpu10I	CCTNAGC	3 cut(s)	698, 1612, 1739
BpuMI	CCSGG	2 cut(s)	1088, 1753
BsaJI	CCNNGG	5 cut(s)	63, 285, 495, 1068, 1656
BsaWI	WCCGGW	1 cut(s)	415
BsaXI	ACNNNNNCTCC	4 cut(s)	251, 266, 281, 296
Bsc4I	CCNNNNNNNGG	7 cut(s)	129, 496, 700, 1262, 1404, 1662, 1758
Bse118I	RCCGGY	1 cut(s)	693
Bse1I	ACTGG	1 cut(s)	1241
Bse3DI	GCAATG	1 cut(s)	1452
BseAI	TCCGGA	1 cut(s)	415
BseBI	CCWGG	3 cut(s)	212, 497, 1243
BseDI	CCNNGG	5 cut(s)	63, 285, 495, 1068, 1656
BseGI	GGATG	5 cut(s)	543, 622, 1005, 1601, 1680
BseLI	CCNNNNNNNGG	7 cut(s)	129, 496, 700, 1262, 1404, 1662, 1758
BseMI	GCAATG	1 cut(s)	1452
BseMII	CTCAG	5 cut(s)	96, 645, 712, 1626, 1730
BseNI	ACTGG	1 cut(s)	1241
BseRI	GAGGAG	2 cut(s)	488, 686
BseSI	GKGCMC	1 cut(s)	586
BshFI	GGCC	4 cut(s)	38, 210, 811, 1371
BshNI	GGYRCC	1 cut(s)	1489
BsiHKAI	GWGCWC	5 cut(s)	586, 873, 940, 1067, 1613
BsiSI	CCGG	4 cut(s)	416, 694, 1087, 1752
BslFI	GGGAC	1 cut(s)	1245
BslI	CCNNNNNNNGG	7 cut(s)	129, 496, 700, 1262, 1404, 1662, 1758
BsmAI	GTCTC	1 cut(s)	254
BsmBI	CGTCTC	1 cut(s)	254
BsmFI	GGGAC	1 cut(s)	1245
BsmI	GAATGC	2 cut(s)	920, 1180
BsnI	GGCC	4 cut(s)	38, 210, 811, 1371
Bsp1286I	GDGCHC	5 cut(s)	586, 873, 940, 1067, 1613
Bsp13I	TCCGGA	1 cut(s)	415
Bsp143I	GATC	3 cut(s)	174, 527, 1150
Bsp19I	CCATGG	1 cut(s)	1068
BspACI	CCGC	4 cut(s)	9, 92, 626, 1479
BspANI	GGCC	4 cut(s)	38, 210, 811, 1371
BspCNI	CTCAG	5 cut(s)	95, 646, 711, 1625, 1731
BspEI	TCCGGA	1 cut(s)	415
BspHI	TCATGA	2 cut(s)	636, 1326
BspLI	GGNNCC	2 cut(s)	1152, 1491
BspPI	GGATC	3 cut(s)	169, 1145, 1158
BspQI	GCTCTTC	1 cut(s)	1055
BspT107I	GGYRCC	1 cut(s)	1489
BspTI	CTTAAG	1 cut(s)	1109
BsrDI	GCAATG	1 cut(s)	1452
BsrFI	RCCGGY	1 cut(s)	693
BsrI	ACTGG	1 cut(s)	1241
BssAI	RCCGGY	1 cut(s)	693
BssECI	CCNNGG	5 cut(s)	63, 285, 495, 1068, 1656
BssMI	GATC	3 cut(s)	174, 527, 1150
BssNAI	GTATAC	1 cut(s)	1524
BssT1I	CCWWGG	2 cut(s)	285, 1068
Bst1107I	GTATAC	1 cut(s)	1524
Bst2UI	CCWGG	3 cut(s)	212, 497, 1243
Bst4CI	ACNGT	4 cut(s)	67, 389, 634, 715
Bst6I	CTCTTC	1 cut(s)	1055
BstAFI	CTTAAG	1 cut(s)	1109
BstC8I	GCNNGC	5 cut(s)	586, 1047, 1268, 1357, 1429
BstDEI	CTNAG	6 cut(s)	82, 654, 698, 1612, 1629, 1739
BstDSI	CCRYGG	2 cut(s)	63, 1068
BstF5I	GGATG	5 cut(s)	543, 622, 1005, 1601, 1680
BstHHI	GCGC	1 cut(s)	1180
BstKTI	GATC	3 cut(s)	177, 530, 1153
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	3 cut(s)	174, 527, 1150
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 626, 1051
BstNI	CCWGG	3 cut(s)	212, 497, 1243
BstNSI	RCATGY	1 cut(s)	191
BstSCI	CCNGG	5 cut(s)	210, 495, 1086, 1241, 1751
BstSFI	CTRYAG	1 cut(s)	72
BstSLI	GKGCMC	1 cut(s)	586
BstV2I	GAAGAC	1 cut(s)	226
BstX2I	RGATCY	2 cut(s)	174, 1150
BstYI	RGATCY	2 cut(s)	174, 1150
BstZ17I	GTATAC	1 cut(s)	1524
BsuI	GTATCC	1 cut(s)	703
BsuRI	GGCC	4 cut(s)	38, 210, 811, 1371
BtgI	CCRYGG	2 cut(s)	63, 1068
BtgZI	GCGATG	1 cut(s)	743
BtsCI	GGATG	5 cut(s)	543, 622, 1005, 1601, 1680
BtsI	GCAGTG	1 cut(s)	327
BtsIMutI	CAGTG	2 cut(s)	327, 1234
Cac8I	GCNNGC	5 cut(s)	586, 1047, 1268, 1357, 1429
CciI	TCATGA	2 cut(s)	636, 1326
CfoI	GCGC	1 cut(s)	1180
Cfr10I	RCCGGY	1 cut(s)	693
Cfr13I	GGNCC	2 cut(s)	214, 1239
Csp6I	GTAC	2 cut(s)	1020, 1579
CspCI	CAANNNNNGTGG	2 cut(s)	48, 83
CviQI	GTAC	2 cut(s)	1020, 1579
DdeI	CTNAG	6 cut(s)	82, 654, 698, 1612, 1629, 1739
DpnI	GATC	3 cut(s)	176, 529, 1152
DpnII	GATC	3 cut(s)	174, 527, 1150
DrdI	GACNNNNNNGTC	1 cut(s)	227
DseDI	GACNNNNNNGTC	1 cut(s)	227
EaeI	YGGCCR	2 cut(s)	36, 208
Eam1104I	CTCTTC	1 cut(s)	1055
EarI	CTCTTC	1 cut(s)	1055
Ecl136II	GAGCTC	1 cut(s)	871
Eco130I	CCWWGG	2 cut(s)	285, 1068
Eco147I	AGGCCT	1 cut(s)	811
Eco24I	GRGCYC	1 cut(s)	873
Eco47I	GGWCC	2 cut(s)	214, 1239
Eco53kI	GAGCTC	1 cut(s)	871
Eco57I	CTGAAG	2 cut(s)	630, 1220
EcoICRI	GAGCTC	1 cut(s)	871
EcoRII	CCWGG	3 cut(s)	210, 495, 1241
EcoT14I	CCWWGG	2 cut(s)	285, 1068
EcoT22I	ATGCAT	1 cut(s)	1056
EcoT38I	GRGCYC	1 cut(s)	873
ErhI	CCWWGG	2 cut(s)	285, 1068
Esp3I	CGTCTC	1 cut(s)	254
FaqI	GGGAC	1 cut(s)	1245
FauI	CCCGC	2 cut(s)	2, 99
FauNDI	CATATG	2 cut(s)	1513, 1595
FblI	GTMKAC	1 cut(s)	1523
Fnu4HI	GCNGC	1 cut(s)	627
FokI	GGATG	5 cut(s)	550, 629, 1012, 1588, 1667
FriOI	GRGCYC	1 cut(s)	873
Fsp4HI	GCNGC	1 cut(s)	627
FspAI	RTGCGCAY	1 cut(s)	1179
FspBI	CTAG	3 cut(s)	665, 1475, 1662
FspI	TGCGCA	1 cut(s)	1179
GlaI	GCGC	1 cut(s)	1179
GluI	GCNGC	1 cut(s)	627
GsuI	CTGGAG	1 cut(s)	1290
HaeIII	GGCC	4 cut(s)	38, 210, 811, 1371
HapII	CCGG	4 cut(s)	416, 694, 1087, 1752
HhaI	GCGC	1 cut(s)	1180
Hin6I	GCGC	1 cut(s)	1178
HinP1I	GCGC	1 cut(s)	1178
HindIII	AAGCTT	2 cut(s)	447, 506
HinfI	GANTC	1 cut(s)	376
HpaII	CCGG	4 cut(s)	416, 694, 1087, 1752
HphI	GGTGA	3 cut(s)	581, 977, 1669
Hpy166II	GTNNAC	2 cut(s)	584, 1524
Hpy188I	TCNGA	6 cut(s)	132, 174, 393, 875, 942, 1150
Hpy188III	TCNNGA	8 cut(s)	114, 416, 637, 1189, 1307, 1327, 1391, 1767
Hpy8I	GTNNAC	2 cut(s)	584, 1524
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	2 cut(s)	605, 1450
HpyCH4III	ACNGT	4 cut(s)	67, 389, 634, 715
HpyCH4IV	ACGT	1 cut(s)	315
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 626, 1051
HpyF3I	CTNAG	6 cut(s)	82, 654, 698, 1612, 1629, 1739
HpySE526I	ACGT	1 cut(s)	315
HspAI	GCGC	1 cut(s)	1178
Kpn2I	TCCGGA	1 cut(s)	415
Kzo9I	GATC	3 cut(s)	174, 527, 1150
LguI	GCTCTTC	1 cut(s)	1055
LmnI	GCTCC	4 cut(s)	260, 860, 868, 1309
LweI	GCATC	4 cut(s)	607, 1368, 1469, 1626
MaeI	CTAG	3 cut(s)	665, 1475, 1662
MaeII	ACGT	1 cut(s)	315
MaeIII	GTNAC	3 cut(s)	820, 1667, 1675
MalI	GATC	3 cut(s)	176, 529, 1152
MboI	GATC	3 cut(s)	174, 527, 1150
MboII	GAAGA	8 cut(s)	226, 236, 811, 1072, 1213, 1214, 1612, 1723
MfeI	CAATTG	1 cut(s)	1257
MflI	RGATCY	2 cut(s)	174, 1150
MhlI	GDGCHC	5 cut(s)	586, 873, 940, 1067, 1613
MlsI	TGGCCA	1 cut(s)	210
MluNI	TGGCCA	1 cut(s)	210
MmeI	TCCRAC	2 cut(s)	282, 1479
Mox20I	TGGCCA	1 cut(s)	210
Mph1103I	ATGCAT	1 cut(s)	1056
MroI	TCCGGA	1 cut(s)	415
MscI	TGGCCA	1 cut(s)	210
MseI	TTAA	9 cut(s)	690, 747, 945, 1110, 1137, 1290, 1400, 1568, 1638
MslI	CAYNNNNRTG	2 cut(s)	437, 1606
Msp20I	TGGCCA	1 cut(s)	210
MspCI	CTTAAG	1 cut(s)	1109
MspI	CCGG	4 cut(s)	416, 694, 1087, 1752
MspR9I	CCNGG	5 cut(s)	212, 497, 1088, 1243, 1753
MunI	CAATTG	1 cut(s)	1257
Mva1269I	GAATGC	2 cut(s)	920, 1180
MvaI	CCWGG	3 cut(s)	212, 497, 1243
MwoI	GCNNNNNNNGC	3 cut(s)	15, 626, 1051
NciI	CCSGG	2 cut(s)	1088, 1753
NcoI	CCATGG	1 cut(s)	1068
NdeI	CATATG	2 cut(s)	1513, 1595
NdeII	GATC	3 cut(s)	174, 527, 1150
NlaIV	GGNNCC	2 cut(s)	1152, 1491
NmeAIII	GCCGAG	2 cut(s)	1347, 1681
NmuCI	GTSAC	1 cut(s)	1675
NsbI	TGCGCA	1 cut(s)	1179
NsiI	ATGCAT	1 cut(s)	1056
NspI	RCATGY	1 cut(s)	191
OliI	CACNNNNGTG	1 cut(s)	437
PagI	TCATGA	2 cut(s)	636, 1326
PceI	AGGCCT	1 cut(s)	811
PciSI	GCTCTTC	1 cut(s)	1055
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PctI	GAATGC	2 cut(s)	920, 1180
PfeI	GAWTC	1 cut(s)	376
PfoI	TCCNGGA	1 cut(s)	1086
PkrI	GCNGC	1 cut(s)	628
PshBI	ATTAAT	2 cut(s)	945, 1290
PsiI	TTATAA	1 cut(s)	1133
Psp124BI	GAGCTC	1 cut(s)	873
Psp6I	CCWGG	3 cut(s)	210, 495, 1241
PspGI	CCWGG	3 cut(s)	210, 495, 1241
PspN4I	GGNNCC	2 cut(s)	1152, 1491
PspPI	GGNCC	2 cut(s)	214, 1239
PsuI	RGATCY	2 cut(s)	174, 1150
RsaI	GTAC	2 cut(s)	1021, 1580
RsaNI	GTAC	2 cut(s)	1020, 1579
RseI	CAYNNNNRTG	2 cut(s)	437, 1606
SacI	GAGCTC	1 cut(s)	873
SapI	GCTCTTC	1 cut(s)	1055
SaqAI	TTAA	9 cut(s)	690, 747, 945, 1110, 1137, 1290, 1400, 1568, 1638
SatI	GCNGC	1 cut(s)	627
Sau3AI	GATC	3 cut(s)	174, 527, 1150
Sau96I	GGNCC	2 cut(s)	214, 1239
ScrFI	CCNGG	5 cut(s)	212, 497, 1088, 1243, 1753
SduI	GDGCHC	5 cut(s)	586, 873, 940, 1067, 1613
SfaNI	GCATC	4 cut(s)	607, 1368, 1469, 1626
SfcI	CTRYAG	1 cut(s)	72
SinI	GGWCC	2 cut(s)	214, 1239
SmiMI	CAYNNNNRTG	2 cut(s)	437, 1606
SmlI	CTYRAG	1 cut(s)	1109
SmoI	CTYRAG	1 cut(s)	1109
SpeI	ACTAGT	1 cut(s)	664
SseBI	AGGCCT	1 cut(s)	811
SsiI	CCGC	4 cut(s)	9, 92, 626, 1479
SspMI	CTAG	3 cut(s)	665, 1475, 1662
SstI	GAGCTC	1 cut(s)	873
StuI	AGGCCT	1 cut(s)	811
StyD4I	CCNGG	5 cut(s)	210, 495, 1086, 1241, 1751
StyI	CCWWGG	2 cut(s)	285, 1068
TaaI	ACNGT	4 cut(s)	67, 389, 634, 715
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	2 cut(s)	237, 521
TauI	GCSGC	1 cut(s)	629
TfiI	GAWTC	1 cut(s)	376
Tru1I	TTAA	9 cut(s)	690, 747, 945, 1110, 1137, 1290, 1400, 1568, 1638
Tru9I	TTAA	9 cut(s)	690, 747, 945, 1110, 1137, 1290, 1400, 1568, 1638
TscAI	CASTG	2 cut(s)	334, 1241
TseFI	GTSAC	1 cut(s)	1675
Tsp45I	GTSAC	1 cut(s)	1675
TspDTI	ATGAA	7 cut(s)	554, 615, 776, 831, 1112, 1315, 1717
TspRI	CASTG	2 cut(s)	334, 1241
Vha464I	CTTAAG	1 cut(s)	1109
VneI	GTGCAC	1 cut(s)	582
VpaK11BI	GGWCC	2 cut(s)	214, 1239
VspI	ATTAAT	2 cut(s)	945, 1290
XapI	RAATTY	4 cut(s)	97, 118, 572, 1382
XceI	RCATGY	1 cut(s)	191
XmiI	GTMKAC	1 cut(s)	1523
XspI	CTAG	3 cut(s)	665, 1475, 1662
Zsp2I	ATGCAT	1 cut(s)	1056

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.