Rmu_sc0000348.1_g000004

Ring finger domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000348.1
OG0004240
Physical Location & Seq
Reverse (-)
19595 .. 21907
2313 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1146 bp
atgacggaggcaaagaaggctgaaactcaattgatatcagctgctgcttttgtggaagggggaatacaagatgcatgtggtgaagcctgtagcatatgccttgaggatttttgtgaaagtgatccttcagtgctgactacttgcaagcatgagtttcacttccactgcatcctggaatggtgccagagaagttcccaatgtccgatgtgttggcaagcccttagcctgaaggatccttccagtcaagaattactggaggcagtagaacgggagaggagcattagggccacatcaagaaatgcagctatattccatcatcccacccttggcgaatttgaagtgcagcatttacctgtgggtactaatgatgctgaccttgaagagcgtatcatccagcacttggcagctgctgcttcaatgggaagggctcaccacattggtagaagggaaggccagaggaaccggtcatctgttcgtggtcatccacacttctcagttatttccactcatcatagtgcagcttcacttggtcatgtttctgcctcgggtggggagagtgaacccgctatcataactgcagcaagtccatctatcccacttacatcaggtggaaatgaatcatcacgttggagttcacaagtttcatctgttcaaactgatgggttttcttcctccccacctgggcctacacttatgcaaagaaatcgtgttccctctagtcgctggagctctactagtcagtcctcaccaatgaatcaggaaagtgcaggaccatcagatcttcagtctatttcagagtctctgaaatcaaaattcaatgccatgtcaatgaaatataaggagtcattttcaaagagtacaagaggctggaaggagaggctgttctctcgtagcacttctatgtcagaacttggttccgaagtccggagagaagtcaatgctggaattgctagtgtatctcgaattatagagcgccttgagaccagagataatagtagagttgaccaggatcatgtagcaaatccaacagcagatggttctttgactgaccagggaaaccagaacagcgctgagagtcatggaggaagtttgaccaataacaataggcctgcgacaacttgtgctgcaggtcctgcttccaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

381

Amino Acids

41.12

Weight (kDa)

6.15

Isoelectric Point (pI)

57.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 26 - 70 1.2e-07 RING-H2 zinc finger domain
zf-RING_2 PF13639 29 - 70 7e-10 Ring finger domain
zf-RING_11 PF17123 30 - 57 8.7e-07 RING-like zinc finger
zf-C3HC4 PF00097 30 - 70 6.3e-06 Zinc finger, C3HC4 type (RING finger)
zf-ANAPC11 PF12861 41 - 77 1.4e-06 Anaphase-promoting complex subunit 11 RING-H2 finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1118
AccB1I GGYRCC 1 cut(s) 180
AccB7I CCANNNNNTGG 1 cut(s) 400
AccIII TCCGGA 1 cut(s) 924
AciI CCGC 1 cut(s) 564
AclWI GGATC 4 cut(s) 116, 227, 240, 1017
AcsI RAATTY 2 cut(s) 332, 812
AcuI CTGAAG 3 cut(s) 111, 248, 767
AfaI GTAC 2 cut(s) 361, 859
AfeI AGCGCT 1 cut(s) 1069
AfiI CCNNNNNNNGG 5 cut(s) 326, 400, 549, 681, 924
AgeI ACCGGT 1 cut(s) 462
AgsI TTSAA 6 cut(s) 338, 380, 417, 653, 817, 852
AhlI ACTAGT 1 cut(s) 734
AjnI CCWGG 4 cut(s) 171, 679, 1005, 1050
AloI GAACNNNNNNTCC 2 cut(s) 866, 898
AluBI AGCT 5 cut(s) 41, 305, 407, 521, 729
AluI AGCT 5 cut(s) 41, 305, 407, 521, 729
Alw21I GWGCWC 1 cut(s) 731
Alw26I GTCTC 2 cut(s) 804, 974
AlwI GGATC 4 cut(s) 116, 227, 240, 1017
AlwNI CAGNNNCTG 3 cut(s) 44, 410, 1133
Ama87I CYCGRG 1 cut(s) 544
Aor13HI TCCGGA 1 cut(s) 924
Aor51HI AGCGCT 1 cut(s) 1069
AoxI GGCC 4 cut(s) 285, 451, 683, 1106
ApoI RAATTY 2 cut(s) 332, 812
AsiGI ACCGGT 1 cut(s) 462
AspLEI GCGC 2 cut(s) 975, 1070
AspS9I GGNCC 4 cut(s) 285, 683, 770, 1130
AsuHPI GGTGA 3 cut(s) 92, 422, 738
AvaI CYCGRG 1 cut(s) 544
AvaII GGWCC 2 cut(s) 770, 1130
BamHI GGATCC 1 cut(s) 232
BanI GGYRCC 1 cut(s) 180
BanII GRGCYC 2 cut(s) 430, 731
BarI GAAGNNNNNNTAC 2 cut(s) 48, 80
Bbv12I GWGCWC 1 cut(s) 731
BccI CCATC 5 cut(s) 321, 595, 653, 781, 1028
BcgI CGANNNNNNTGC 2 cut(s) 686, 720
BciT130I CCWGG 4 cut(s) 173, 681, 1007, 1052
BcoDI GTCTC 2 cut(s) 804, 974
BcuI ACTAGT 1 cut(s) 734
BfaI CTAG 3 cut(s) 717, 735, 951
BfmI CTRYAG 3 cut(s) 88, 576, 1125
BfoI RGCGCY 2 cut(s) 976, 1071
BfuAI ACCTGC 1 cut(s) 1118
BglII AGATCT 1 cut(s) 778
Bme1390I CCNGG 4 cut(s) 173, 681, 1007, 1052
Bme18I GGWCC 2 cut(s) 770, 1130
BmeT110I CYCGRG 1 cut(s) 544
BmgT120I GGNCC 4 cut(s) 285, 683, 770, 1130
BmiI GGNNCC 4 cut(s) 182, 234, 461, 916
BmrFI CCNGG 4 cut(s) 173, 681, 1007, 1052
BmsI GCATC 3 cut(s) 61, 177, 358
BpmI CTGGAG 2 cut(s) 275, 745
Bpu10I CCTNAGC 1 cut(s) 221
BpuEI CTTGAG 2 cut(s) 122, 998
BsaI GGTCTC 1 cut(s) 974
BsaJI CCNNGG 4 cut(s) 325, 543, 680, 1051
BsaWI WCCGGW 2 cut(s) 462, 924
BsaXI ACNNNNNCTCC 2 cut(s) 866, 896
Bsc4I CCNNNNNNNGG 5 cut(s) 326, 400, 549, 681, 924
Bse118I RCCGGY 1 cut(s) 462
Bse1I ACTGG 2 cut(s) 240, 258
BseAI TCCGGA 1 cut(s) 924
BseBI CCWGG 4 cut(s) 173, 681, 1007, 1052
BseDI CCNNGG 4 cut(s) 325, 543, 680, 1051
BseGI GGATG 4 cut(s) 168, 316, 390, 481
BseLI CCNNNNNNNGG 5 cut(s) 326, 400, 549, 681, 924
BseMII CTCAG 2 cut(s) 507, 1062
BseNI ACTGG 2 cut(s) 240, 258
BseRI GAGGAG 1 cut(s) 289
BsgI GTGCAG 3 cut(s) 362, 537, 786
BshFI GGCC 4 cut(s) 287, 453, 685, 1108
BshNI GGYRCC 1 cut(s) 180
BshTI ACCGGT 1 cut(s) 462
BsiHKAI GWGCWC 1 cut(s) 731
BsiHKCI CYCGRG 1 cut(s) 544
BsiSI CCGG 2 cut(s) 463, 925
BslI CCNNNNNNNGG 5 cut(s) 326, 400, 549, 681, 924
BsmAI GTCTC 2 cut(s) 804, 974
BsnI GGCC 4 cut(s) 287, 453, 685, 1108
Bso31I GGTCTC 1 cut(s) 974
BsoBI CYCGRG 1 cut(s) 544
Bsp1286I GDGCHC 2 cut(s) 430, 731
Bsp13I TCCGGA 1 cut(s) 924
Bsp143I GATC 4 cut(s) 121, 232, 778, 1009
BspACI CCGC 1 cut(s) 564
BspANI GGCC 4 cut(s) 287, 453, 685, 1108
BspCNI CTCAG 2 cut(s) 506, 1063
BspEI TCCGGA 1 cut(s) 924
BspLI GGNNCC 4 cut(s) 182, 234, 461, 916
BspMAI CTGCAG 2 cut(s) 580, 1129
BspMI ACCTGC 1 cut(s) 1118
BspPI GGATC 4 cut(s) 116, 227, 240, 1017
BspQI GCTCTTC 1 cut(s) 375
BspT107I GGYRCC 1 cut(s) 180
BspTNI GGTCTC 1 cut(s) 974
BsrFI RCCGGY 1 cut(s) 462
BsrI ACTGG 2 cut(s) 240, 258
BssAI RCCGGY 1 cut(s) 462
BssECI CCNNGG 4 cut(s) 325, 543, 680, 1051
BssMI GATC 4 cut(s) 121, 232, 778, 1009
BssT1I CCWWGG 1 cut(s) 325
Bst2UI CCWGG 4 cut(s) 173, 681, 1007, 1052
Bst6I CTCTTC 1 cut(s) 375
BstAPI GCANNNNNTGC 2 cut(s) 410, 1133
BstC8I GCNNGC 3 cut(s) 146, 216, 1110
BstDEI CTNAG 3 cut(s) 221, 493, 1071
BstF5I GGATG 4 cut(s) 168, 316, 390, 481
BstH2I RGCGCY 2 cut(s) 976, 1071
BstHHI GCGC 2 cut(s) 975, 1070
BstKTI GATC 4 cut(s) 124, 235, 781, 1012
BstMAI GTCTC 2 cut(s) 804, 974
BstMBI GATC 4 cut(s) 121, 232, 778, 1009
BstMWI GCNNNNNNNGC 4 cut(s) 17, 410, 947, 1133
BstNI CCWGG 4 cut(s) 173, 681, 1007, 1052
BstNSI RCATGY 1 cut(s) 78
BstSCI CCNGG 4 cut(s) 171, 679, 1005, 1050
BstSFI CTRYAG 3 cut(s) 88, 576, 1125
BstX2I RGATCY 2 cut(s) 232, 778
BstYI RGATCY 2 cut(s) 232, 778
BsuRI GGCC 4 cut(s) 287, 453, 685, 1108
BtsCI GGATG 4 cut(s) 168, 316, 390, 481
BtsI GCAGTG 1 cut(s) 163
BtsIMutI CAGTG 2 cut(s) 135, 163
BveI ACCTGC 1 cut(s) 1118
Cac8I GCNNGC 3 cut(s) 146, 216, 1110
CaiI CAGNNNCTG 3 cut(s) 44, 410, 1133
CfoI GCGC 2 cut(s) 975, 1070
Cfr10I RCCGGY 1 cut(s) 462
Cfr13I GGNCC 4 cut(s) 285, 683, 770, 1130
Csp6I GTAC 2 cut(s) 360, 858
CspAI ACCGGT 1 cut(s) 462
CviAII CATG 6 cut(s) 75, 149, 533, 823, 1013, 1079
CviQI GTAC 2 cut(s) 360, 858
DdeI CTNAG 3 cut(s) 221, 493, 1071
DpnI GATC 4 cut(s) 123, 234, 780, 1011
DpnII GATC 4 cut(s) 121, 232, 778, 1009
Eam1104I CTCTTC 1 cut(s) 375
EarI CTCTTC 1 cut(s) 375
Ecl136II GAGCTC 1 cut(s) 729
Eco130I CCWWGG 1 cut(s) 325
Eco147I AGGCCT 1 cut(s) 1108
Eco24I GRGCYC 2 cut(s) 430, 731
Eco31I GGTCTC 1 cut(s) 974
Eco32I GATATC 1 cut(s) 36
Eco47I GGWCC 2 cut(s) 770, 1130
Eco47III AGCGCT 1 cut(s) 1069
Eco53kI GAGCTC 1 cut(s) 729
Eco57I CTGAAG 3 cut(s) 111, 248, 767
Eco88I CYCGRG 1 cut(s) 544
EcoICRI GAGCTC 1 cut(s) 729
EcoO109I RGGNCCY 1 cut(s) 1130
EcoRII CCWGG 4 cut(s) 171, 679, 1005, 1050
EcoRV GATATC 1 cut(s) 36
EcoT14I CCWWGG 1 cut(s) 325
EcoT22I ATGCAT 1 cut(s) 76
EcoT38I GRGCYC 2 cut(s) 430, 731
ErhI CCWWGG 1 cut(s) 325
FaeI CATG 6 cut(s) 78, 152, 536, 826, 1016, 1082
FalI AAGNNNNNCTT 2 cut(s) 109, 141
FatI CATG 6 cut(s) 74, 148, 532, 822, 1012, 1078
FauI CCCGC 1 cut(s) 571
FauNDI CATATG 1 cut(s) 95
FokI GGATG 4 cut(s) 155, 303, 377, 468
FriOI GRGCYC 2 cut(s) 430, 731
FspBI CTAG 3 cut(s) 717, 735, 951
GlaI GCGC 2 cut(s) 974, 1069
GsuI CTGGAG 2 cut(s) 275, 745
HaeII RGCGCY 2 cut(s) 976, 1071
HaeIII GGCC 4 cut(s) 287, 453, 685, 1108
HapII CCGG 2 cut(s) 463, 925
HhaI GCGC 2 cut(s) 975, 1070
Hin1II CATG 6 cut(s) 78, 152, 536, 826, 1016, 1082
Hin6I GCGC 2 cut(s) 973, 1068
HinP1I GCGC 2 cut(s) 973, 1068
HincII GTYRAC 1 cut(s) 1003
HindII GTYRAC 1 cut(s) 1003
HinfI GANTC 5 cut(s) 617, 754, 797, 842, 1075
HpaII CCGG 2 cut(s) 463, 925
HphI GGTGA 3 cut(s) 92, 422, 738
Hpy166II GTNNAC 3 cut(s) 560, 635, 1003
Hpy188I TCNGA 6 cut(s) 204, 778, 796, 804, 907, 919
Hpy188III TCNNGA 5 cut(s) 245, 294, 758, 925, 960
Hpy8I GTNNAC 3 cut(s) 560, 635, 1003
HpyAV CCTTC 9 cut(s) 10, 50, 135, 223, 246, 417, 438, 443, 865
HpyCH4IV ACGT 1 cut(s) 625
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 410, 947, 1133
HpyF3I CTNAG 3 cut(s) 221, 493, 1071
HpySE526I ACGT 1 cut(s) 625
Hsp92II CATG 6 cut(s) 78, 152, 536, 826, 1016, 1082
HspAI GCGC 2 cut(s) 973, 1068
Kpn2I TCCGGA 1 cut(s) 924
Kzo9I GATC 4 cut(s) 121, 232, 778, 1009
LguI GCTCTTC 1 cut(s) 375
LmnI GCTCC 2 cut(s) 276, 726
LweI GCATC 3 cut(s) 61, 177, 358
MaeI CTAG 3 cut(s) 717, 735, 951
MaeII ACGT 1 cut(s) 625
MalI GATC 4 cut(s) 123, 234, 780, 1011
MboI GATC 4 cut(s) 121, 232, 778, 1009
MboII GAAGA 3 cut(s) 392, 660, 773
MfeI CAATTG 2 cut(s) 29, 1141
MflI RGATCY 2 cut(s) 232, 778
MhlI GDGCHC 2 cut(s) 430, 731
MluCI AATT 7 cut(s) 29, 248, 332, 812, 945, 963, 1141
MlyI GAGTC 3 cut(s) 806, 851, 1084
MmeI TCCRAC 2 cut(s) 608, 1049
Mph1103I ATGCAT 1 cut(s) 76
MroI TCCGGA 1 cut(s) 924
MslI CAYNNNNRTG 3 cut(s) 513, 827, 899
MspA1I CMGCKG 2 cut(s) 41, 407
MspI CCGG 2 cut(s) 463, 925
MspR9I CCNGG 4 cut(s) 173, 681, 1007, 1052
MunI CAATTG 2 cut(s) 29, 1141
MvaI CCWGG 4 cut(s) 173, 681, 1007, 1052
MwoI GCNNNNNNNGC 4 cut(s) 17, 410, 947, 1133
NdeI CATATG 1 cut(s) 95
NdeII GATC 4 cut(s) 121, 232, 778, 1009
NlaIII CATG 6 cut(s) 78, 152, 536, 826, 1016, 1082
NlaIV GGNNCC 4 cut(s) 182, 234, 461, 916
NsiI ATGCAT 1 cut(s) 76
NspI RCATGY 1 cut(s) 78
PceI AGGCCT 1 cut(s) 1108
PciSI GCTCTTC 1 cut(s) 375
PfeI GAWTC 2 cut(s) 617, 754
PflMI CCANNNNNTGG 1 cut(s) 400
PfoI TCCNGGA 1 cut(s) 171
PinAI ACCGGT 1 cut(s) 462
PleI GAGTC 3 cut(s) 805, 850, 1083
PpsI GAGTC 3 cut(s) 805, 850, 1083
PpuMI RGGWCCY 1 cut(s) 1130
Psp124BI GAGCTC 1 cut(s) 731
Psp5II RGGWCCY 1 cut(s) 1130
Psp6I CCWGG 4 cut(s) 171, 679, 1005, 1050
PspGI CCWGG 4 cut(s) 171, 679, 1005, 1050
PspN4I GGNNCC 4 cut(s) 182, 234, 461, 916
PspPI GGNCC 4 cut(s) 285, 683, 770, 1130
PspPPI RGGWCCY 1 cut(s) 1130
PstI CTGCAG 2 cut(s) 580, 1129
PstNI CAGNNNCTG 3 cut(s) 44, 410, 1133
PsuI RGATCY 2 cut(s) 232, 778
PvuII CAGCTG 2 cut(s) 41, 407
RsaI GTAC 2 cut(s) 361, 859
RsaNI GTAC 2 cut(s) 360, 858
RseI CAYNNNNRTG 3 cut(s) 513, 827, 899
SacI GAGCTC 1 cut(s) 731
SapI GCTCTTC 1 cut(s) 375
Sau3AI GATC 4 cut(s) 121, 232, 778, 1009
Sau96I GGNCC 4 cut(s) 285, 683, 770, 1130
SchI GAGTC 3 cut(s) 806, 851, 1084
ScrFI CCNGG 4 cut(s) 173, 681, 1007, 1052
SduI GDGCHC 2 cut(s) 430, 731
SfaNI GCATC 3 cut(s) 61, 177, 358
SfcI CTRYAG 3 cut(s) 88, 576, 1125
SinI GGWCC 2 cut(s) 770, 1130
SmiMI CAYNNNNRTG 3 cut(s) 513, 827, 899
SmlI CTYRAG 2 cut(s) 101, 977
SmoI CTYRAG 2 cut(s) 101, 977
SpeI ACTAGT 1 cut(s) 734
Sse9I AATT 7 cut(s) 29, 248, 332, 812, 945, 963, 1141
SseBI AGGCCT 1 cut(s) 1108
SsiI CCGC 1 cut(s) 564
SspMI CTAG 3 cut(s) 717, 735, 951
SstI GAGCTC 1 cut(s) 731
StuI AGGCCT 1 cut(s) 1108
StyD4I CCNGG 4 cut(s) 171, 679, 1005, 1050
StyI CCWWGG 1 cut(s) 325
TaiI ACGT 1 cut(s) 628
TaqI TCGA 1 cut(s) 961
TasI AATT 7 cut(s) 29, 248, 332, 812, 945, 963, 1141
TatI WGTACW 1 cut(s) 857
TfiI GAWTC 2 cut(s) 617, 754
TscAI CASTG 2 cut(s) 135, 170
TspDTI ATGAA 4 cut(s) 630, 633, 767, 845
TspGWI ACGGA 1 cut(s) 20
TspRI CASTG 2 cut(s) 135, 170
Van91I CCANNNNNTGG 1 cut(s) 400
VpaK11BI GGWCC 2 cut(s) 770, 1130
XapI RAATTY 2 cut(s) 332, 812
XceI RCATGY 1 cut(s) 78
XspI CTAG 3 cut(s) 717, 735, 951
Zsp2I ATGCAT 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.