Rmu_sc0000367.1_g000029
TCP Family

TCP family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000367.1
OG0010547
Physical Location & Seq
Forward (+)
120789 .. 121484
696 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 696 bp
atgagtgtgaatgacatggcatgccacctaaaattgaggccacaaatcattttccttttgtatcgtggctggaaggtaacatgggcaataaaaggaggcagcttacaagaacaagttgcccttaagcctcaactctttatcaccaaccccaaacaatttctggagcactcgtatgtgctaataatctatttgcttacaatgggaacaaatccaagtatctcaacaaatgcctcaagtagcataagtaaggtccttggcaaagattcatcagaagacaacaatacaaaggttgacggtcgtggccgtcgtattcgcctaccacccatttgtgctgctcggatctttcagcttactcatgagcttggtcacaaaaccgatggccagacgatagagtggctcctaaaacaagctgaaccatctattctcgctgtcacaggtaacggtgtcactcccagtaacactctttcgactctagcttctgtgaatttgcaggtagaaaaagtcgttagtgaagacaaaaattttgtgagaaagaagtgcactacgggtggccaaccgttgccaccaccctatgaccattacctgaagatcattacaaaaaactatggtatcgaattttctgtcaatgacgtcgcaatagatgtggggatcgaaactcaggaagagttcaaggagaaagatggaaaacaagattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TCP

Protein Analysis

231

Amino Acids

25.72

Weight (kDa)

8.66

Isoelectric Point (pI)

40.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 91 - 173 6.1e-21 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 633
Acc36I ACCTGC 1 cut(s) 481
AclWI GGATC 2 cut(s) 347, 656
AcoI YGGCCR 3 cut(s) 301, 379, 550
AcsI RAATTY 3 cut(s) 484, 520, 614
AcuI CTGAAG 1 cut(s) 605
AcyI GRCGYC 1 cut(s) 630
AflII CTTAAG 1 cut(s) 122
AgsI TTSAA 1 cut(s) 670
AluBI AGCT 5 cut(s) 102, 349, 361, 410, 476
AluI AGCT 5 cut(s) 102, 349, 361, 410, 476
Alw21I GWGCWC 2 cut(s) 168, 542
Alw44I GTGCAC 1 cut(s) 538
AlwI GGATC 2 cut(s) 347, 656
AoxI GGCC 4 cut(s) 38, 301, 379, 550
ApaLI GTGCAC 1 cut(s) 538
ApeKI GCWGC 2 cut(s) 99, 332
ApoI RAATTY 3 cut(s) 484, 520, 614
ArsI GACNNNNNNTTYG 4 cut(s) 506, 538, 606, 638
AspS9I GGNCC 1 cut(s) 250
AsuHPI GGTGA 1 cut(s) 133
AvaII GGWCC 1 cut(s) 250
BaeGI GKGCMC 1 cut(s) 542
BaeI ACNNNNGTAYC 2 cut(s) 592, 625
BalI TGGCCA 2 cut(s) 381, 552
BbsI GAAGAC 2 cut(s) 279, 519
Bbv12I GWGCWC 2 cut(s) 168, 542
BbvI GCAGC 2 cut(s) 111, 319
BccI CCATC 3 cut(s) 371, 424, 674
BceAI ACGGC 1 cut(s) 288
BfaI CTAG 1 cut(s) 473
BfrI CTTAAG 1 cut(s) 122
BfuAI ACCTGC 1 cut(s) 481
BisI GCNGC 2 cut(s) 100, 333
BlsI GCNGC 2 cut(s) 101, 334
Bme18I GGWCC 1 cut(s) 250
BmgT120I GGNCC 1 cut(s) 250
BmiI GGNNCC 1 cut(s) 398
BmrI ACTGGG 1 cut(s) 447
BmuI ACTGGG 1 cut(s) 447
BpiI GAAGAC 2 cut(s) 279, 519
BpmI CTGGAG 1 cut(s) 182
BpuEI CTTGAG 1 cut(s) 217
BsaHI GRCGYC 1 cut(s) 630
BsaJI CCNNGG 1 cut(s) 253
BsaXI ACNNNNNCTCC 2 cut(s) 155, 185
Bse1I ACTGG 1 cut(s) 453
BseDI CCNNGG 1 cut(s) 253
BseMII CTCAG 1 cut(s) 671
BseNI ACTGG 1 cut(s) 453
BseSI GKGCMC 1 cut(s) 542
BseXI GCAGC 2 cut(s) 111, 319
Bsh1285I CGRYCG 1 cut(s) 298
BshFI GGCC 4 cut(s) 40, 303, 381, 552
BsiEI CGRYCG 1 cut(s) 298
BsiHKAI GWGCWC 2 cut(s) 168, 542
BsnI GGCC 4 cut(s) 40, 303, 381, 552
Bsp1286I GDGCHC 2 cut(s) 168, 542
Bsp143I GATC 3 cut(s) 339, 588, 648
BspANI GGCC 4 cut(s) 40, 303, 381, 552
BspCNI CTCAG 1 cut(s) 670
BspHI TCATGA 1 cut(s) 355
BspLI GGNNCC 1 cut(s) 398
BspMI ACCTGC 1 cut(s) 481
BspPI GGATC 2 cut(s) 347, 656
BspTI CTTAAG 1 cut(s) 122
BsrI ACTGG 1 cut(s) 453
BssECI CCNNGG 1 cut(s) 253
BssMI GATC 3 cut(s) 339, 588, 648
BssNI GRCGYC 1 cut(s) 630
BssT1I CCWWGG 1 cut(s) 253
Bst4CI ACNGT 3 cut(s) 296, 443, 558
Bst6I CTCTTC 1 cut(s) 657
BstACI GRCGYC 1 cut(s) 630
BstAFI CTTAAG 1 cut(s) 122
BstC8I GCNNGC 1 cut(s) 22
BstDEI CTNAG 1 cut(s) 657
BstKTI GATC 3 cut(s) 342, 591, 651
BstMBI GATC 3 cut(s) 339, 588, 648
BstMCI CGRYCG 1 cut(s) 298
BstNSI RCATGY 1 cut(s) 24
BstSLI GKGCMC 1 cut(s) 542
BstV1I GCAGC 2 cut(s) 111, 319
BstV2I GAAGAC 2 cut(s) 279, 519
BstX2I RGATCY 1 cut(s) 339
BstYI RGATCY 1 cut(s) 339
BsuRI GGCC 4 cut(s) 40, 303, 381, 552
BveI ACCTGC 1 cut(s) 481
Cac8I GCNNGC 1 cut(s) 22
CciI TCATGA 1 cut(s) 355
Cfr13I GGNCC 1 cut(s) 250
CspCI CAANNNNNGTGG 2 cut(s) 624, 659
CviAII CATG 4 cut(s) 16, 21, 81, 356
DdeI CTNAG 1 cut(s) 657
DpnI GATC 3 cut(s) 341, 590, 650
DpnII GATC 3 cut(s) 339, 588, 648
EaeI YGGCCR 3 cut(s) 301, 379, 550
Eam1104I CTCTTC 1 cut(s) 657
EarI CTCTTC 1 cut(s) 657
Eco130I CCWWGG 1 cut(s) 253
Eco47I GGWCC 1 cut(s) 250
Eco57I CTGAAG 1 cut(s) 605
EcoO109I RGGNCCY 1 cut(s) 250
EcoT14I CCWWGG 1 cut(s) 253
ErhI CCWWGG 1 cut(s) 253
FaeI CATG 4 cut(s) 19, 24, 84, 359
FaiI YATR 8 cut(s) 17, 22, 82, 174, 242, 357, 573, 606
FalI AAGNNNNNCTT 2 cut(s) 105, 137
FatI CATG 4 cut(s) 15, 20, 80, 355
Fnu4HI GCNGC 2 cut(s) 100, 333
Fsp4HI GCNGC 2 cut(s) 100, 333
FspBI CTAG 1 cut(s) 473
GluI GCNGC 2 cut(s) 100, 333
GsuI CTGGAG 1 cut(s) 182
HaeIII GGCC 4 cut(s) 40, 303, 381, 552
Hin1I GRCGYC 1 cut(s) 630
Hin1II CATG 4 cut(s) 19, 24, 84, 359
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HinfI GANTC 2 cut(s) 263, 469
HphI GGTGA 1 cut(s) 133
Hpy166II GTNNAC 2 cut(s) 292, 540
Hpy188I TCNGA 2 cut(s) 271, 339
Hpy188III TCNNGA 3 cut(s) 161, 356, 659
Hpy8I GTNNAC 2 cut(s) 292, 540
Hpy99I CGWCG 2 cut(s) 309, 635
HpyAV CCTTC 1 cut(s) 67
HpyCH4III ACNGT 3 cut(s) 296, 443, 558
HpyCH4IV ACGT 1 cut(s) 630
HpyCH4V TGCA 2 cut(s) 490, 540
HpyF3I CTNAG 1 cut(s) 657
HpySE526I ACGT 1 cut(s) 630
Hsp92I GRCGYC 1 cut(s) 630
Hsp92II CATG 4 cut(s) 19, 24, 84, 359
Kzo9I GATC 3 cut(s) 339, 588, 648
LmnI GCTCC 2 cut(s) 163, 402
LpnPI CCDG 8 cut(s) 55, 146, 395, 420, 466, 476, 596, 644
Lsp1109I GCAGC 2 cut(s) 111, 319
MaeI CTAG 1 cut(s) 473
MaeII ACGT 1 cut(s) 630
MaeIII GTNAC 6 cut(s) 76, 365, 430, 437, 445, 455
MalI GATC 3 cut(s) 341, 590, 650
MboI GATC 3 cut(s) 339, 588, 648
MboII GAAGA 4 cut(s) 284, 524, 598, 674
MflI RGATCY 1 cut(s) 339
MhlI GDGCHC 2 cut(s) 168, 542
MlsI TGGCCA 2 cut(s) 381, 552
MluCI AATT 5 cut(s) 32, 155, 484, 520, 614
MluNI TGGCCA 2 cut(s) 381, 552
MlyI GAGTC 1 cut(s) 463
MnlI CCTC 4 cut(s) 30, 89, 138, 241
Mox20I TGGCCA 2 cut(s) 381, 552
MscI TGGCCA 2 cut(s) 381, 552
MseI TTAA 1 cut(s) 123
MslI CAYNNNNRTG 1 cut(s) 171
Msp20I TGGCCA 2 cut(s) 381, 552
MspCI CTTAAG 1 cut(s) 122
NdeII GATC 3 cut(s) 339, 588, 648
NlaIII CATG 4 cut(s) 19, 24, 84, 359
NlaIV GGNNCC 1 cut(s) 398
NmuCI GTSAC 3 cut(s) 365, 430, 445
NspI RCATGY 1 cut(s) 24
PaeI GCATGC 1 cut(s) 24
PagI TCATGA 1 cut(s) 355
PcsI WCGNNNNNNNCGW 1 cut(s) 304
PfeI GAWTC 1 cut(s) 263
PkrI GCNGC 2 cut(s) 101, 334
PleI GAGTC 1 cut(s) 463
PpsI GAGTC 1 cut(s) 463
PpuMI RGGWCCY 1 cut(s) 250
Psp5II RGGWCCY 1 cut(s) 250
PspN4I GGNNCC 1 cut(s) 398
PspPI GGNCC 1 cut(s) 250
PspPPI RGGWCCY 1 cut(s) 250
PsuI RGATCY 1 cut(s) 339
RseI CAYNNNNRTG 1 cut(s) 171
SaqAI TTAA 1 cut(s) 123
SatI GCNGC 2 cut(s) 100, 333
Sau3AI GATC 3 cut(s) 339, 588, 648
Sau96I GGNCC 1 cut(s) 250
SchI GAGTC 1 cut(s) 463
SduI GDGCHC 2 cut(s) 168, 542
SinI GGWCC 1 cut(s) 250
SmiMI CAYNNNNRTG 1 cut(s) 171
SmlI CTYRAG 2 cut(s) 122, 232
SmoI CTYRAG 2 cut(s) 122, 232
SphI GCATGC 1 cut(s) 24
Sse9I AATT 5 cut(s) 32, 155, 484, 520, 614
SspMI CTAG 1 cut(s) 473
StyI CCWWGG 1 cut(s) 253
TaaI ACNGT 3 cut(s) 296, 443, 558
TaiI ACGT 1 cut(s) 633
TaqI TCGA 3 cut(s) 467, 612, 651
TasI AATT 5 cut(s) 32, 155, 484, 520, 614
TfiI GAWTC 1 cut(s) 263
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TseFI GTSAC 3 cut(s) 365, 430, 445
TseI GCWGC 2 cut(s) 99, 332
Tsp45I GTSAC 3 cut(s) 365, 430, 445
TspDTI ATGAA 1 cut(s) 255
Vha464I CTTAAG 1 cut(s) 122
VneI GTGCAC 1 cut(s) 538
VpaK11BI GGWCC 1 cut(s) 250
XapI RAATTY 3 cut(s) 484, 520, 614
XceI RCATGY 1 cut(s) 24
XcmI CCANNNNNNNNNTGG 1 cut(s) 157
XspI CTAG 1 cut(s) 473
ZraI GACGTC 1 cut(s) 631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.