Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000403.1

Orthogroup ID

OG0006580

Physical Location & Seq

Genomic Coordinates Reverse (-)

48747 .. 50117

Gene Structure 1371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

atggctcgcctttgcttaaactgtgatggatctgtacactcagccaatgcgttagcgcgaaggcactcacgttggtttctatgtgataagtgcaatgatcagcctgcaacagttcgatgcctggatgagaacatgtccttgtgccaaagttgtgagtggaatcacaataatggggttacaggaatggggcaccgtaaccaagcaataagttgctatacgggctgtccgtcgttgtctgagatttcgagaatttggtctgcggtccttgaagggggttcagcttctggtggttttggtggcagtgcttgggagtcacttgggggttcggtgatgccaaagaatgagaataattgcattagtaactgtttggagcgtagagatagtgacgcatcttcgtttggggtagtgagtgctggcaagttgaatgaagtactagcagagtctaattgtactcccaagtttgagccgtggatggccccatctgctatgattccatcaaatccgaactgcatccagccacaatgcaaagatcaagcaccattcttgcctcaggagtcgagccagatgccaaagggttcttcaaattttaaagatctaggaattcaggatggcaatgatctatgtgaaggtctcaacatggatgatgttccactagacgttgaaaatgacgatgagctatttagctgctcacaaggtccttccagatactcctttgaggatggagagttggactgtctattaatggaccagaaaaacttatcagtcaccgagtctaatggtcctcacagtgacaatgctatacaacaggcatcaccatcaaggcaacaagagtgtaccgtgggatttcactcatcctgtgtgtcagatagtgtgatgcccccagtgatgaatgctggtagcactgtaaactgcagcctgctcatgaatcctagttgcagcagaaacatcaatctggagggattaattaatcctactggtcaagttcattcaagcatatctctatcactatccagcatcacaagagatacaactcatccagattatcaagattgcggactgtcacccgtctttctatcagcagaaccttgggactcgactttggagaccagcagtccacgagcaagggacaaagctaagatgagatatgaggaaaaaaaaaaactcgcacgtatgtctctacactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009892 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022603 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0060688 GO:0065007 GO:0080090 GO:0140110 GO:1900618 GO:1903506 GO:1905428 GO:2000026 GO:2000028 GO:2000032 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

394

Amino Acids

42.76

Weight (kDa)

4.87

Isoelectric Point (pI)

59.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANCHR-like_BBOX	PF22586	27 - 64	1.8e-06	ANCHR-like B-box zinc-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21880 AT3G21880 AT3G21880 AT4G15250
fragaria_vesca	FvH4_6g43570
malus_domestica	MD09G1104700.v1.1
prunus_persica	Prupe.3G220900_v2.0.a1
pyrus_communis	pycom09g02770 pycom17g08960 pycom17g08970 pycom17g08990
rosa_chinensis	RchiOBHm_Chr2g0160151
rosa_laevigata	RLG00000021200
rosa_multiflora	Rmu_sc0000403.1_g000012
rosa_roxburghii	Rroxscaffold_2G00090010
rosa_rugosa	Rorug02G0481400.1 Rorug02G0481500.1 Rorug02G0481600 Rorug02G0481700 Rorug02G0481800 Rorug02G0481900
rosa_samantha	Rh2AG547400 Rh2BG560600 Rh2CG531000 Rh2DG569300
rosa_wichuraiana	Rw2G045260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	189
AccII	CGCG	1 cut(s)	58
AciI	CCGC	2 cut(s)	260, 1053
AclWI	GGATC	1 cut(s)	37
AcsI	RAATTY	3 cut(s)	249, 583, 600
AfaI	GTAC	4 cut(s)	36, 432, 451, 835
AfiI	CCNNNNNNNGG	1 cut(s)	271
AflIII	ACRYGT	1 cut(s)	132
AgsI	TTSAA	5 cut(s)	269, 424, 582, 662, 990
AhdI	GACNNNNNGTC	1 cut(s)	1110
AjnI	CCWGG	1 cut(s)	120
AjuI	GAANNNNNNNTTGG	2 cut(s)	562, 594
AluBI	AGCT	4 cut(s)	281, 676, 684, 1133
AluI	AGCT	4 cut(s)	281, 676, 684, 1133
Alw26I	GTCTC	3 cut(s)	635, 1097, 1179
AlwI	GGATC	1 cut(s)	37
AlwNI	CAGNNNCTG	1 cut(s)	284
AoxI	GGCC	1 cut(s)	474
ApeKI	GCWGC	3 cut(s)	684, 912, 936
ApoI	RAATTY	3 cut(s)	249, 583, 600
AseI	ATTAAT	3 cut(s)	740, 962, 966
AspLEI	GCGC	1 cut(s)	58
AspS9I	GGNCC	5 cut(s)	262, 475, 695, 745, 779
AsuHPI	GGTGA	4 cut(s)	340, 757, 804, 1053
AvaII	GGWCC	4 cut(s)	262, 695, 745, 779
AxyI	CCTNAGG	1 cut(s)	549
BaeGI	GKGCMC	1 cut(s)	192
BanI	GGYRCC	1 cut(s)	189
BauI	CACGAG	1 cut(s)	1116
BbvI	GCAGC	3 cut(s)	671, 924, 948
BccI	CCATC	7 cut(s)	20, 466, 487, 502, 602, 713, 823
BceAI	ACGGC	1 cut(s)	451
BcgI	CGANNNNNNTGC	2 cut(s)	547, 581
BciT130I	CCWGG	1 cut(s)	122
BclI	TGATCA	1 cut(s)	97
BcoDI	GTCTC	3 cut(s)	635, 1097, 1179
BfaI	CTAG	4 cut(s)	434, 596, 653, 930
BfmI	CTRYAG	1 cut(s)	910
BglII	AGATCT	1 cut(s)	592
BisI	GCNGC	3 cut(s)	685, 913, 937
BlsI	GCNGC	3 cut(s)	686, 914, 938
BmcAI	AGTACT	1 cut(s)	432
Bme1390I	CCNGG	1 cut(s)	122
Bme18I	GGWCC	4 cut(s)	262, 695, 745, 779
BmeRI	GACNNNNNGTC	1 cut(s)	1110
BmgT120I	GGNCC	5 cut(s)	262, 475, 695, 745, 779
BmiI	GGNNCC	2 cut(s)	191, 477
BmrFI	CCNGG	1 cut(s)	122
BmrI	ACTGGG	1 cut(s)	875
BmsI	GCATC	8 cut(s)	107, 321, 398, 519, 555, 818, 864, 1023
BmuI	ACTGGG	1 cut(s)	875
BpmI	CTGGAG	1 cut(s)	974
BsaAI	YACGTR	1 cut(s)	1169
BsaI	GGTCTC	2 cut(s)	635, 1097
BsaJI	CCNNGG	3 cut(s)	467, 837, 1085
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
Bse1I	ACTGG	2 cut(s)	881, 979
Bse21I	CCTNAGG	1 cut(s)	549
Bse3DI	GCAATG	2 cut(s)	100, 619
BseBI	CCWGG	1 cut(s)	122
BseDI	CCNNGG	3 cut(s)	467, 837, 1085
BseGI	GGATG	8 cut(s)	130, 477, 510, 613, 646, 724, 851, 1033
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseMI	GCAATG	2 cut(s)	100, 619
BseMII	CTCAG	3 cut(s)	54, 228, 563
BseNI	ACTGG	2 cut(s)	881, 979
BseSI	GKGCMC	1 cut(s)	192
BseXI	GCAGC	3 cut(s)	671, 924, 948
Bsh1236I	CGCG	1 cut(s)	58
BshFI	GGCC	1 cut(s)	476
BshNI	GGYRCC	1 cut(s)	189
BslFI	GGGAC	2 cut(s)	1103, 1139
BslI	CCNNNNNNNGG	1 cut(s)	271
BsmAI	GTCTC	3 cut(s)	635, 1097, 1179
BsmFI	GGGAC	2 cut(s)	1103, 1139
BsmI	GAATGC	1 cut(s)	895
BsnI	GGCC	1 cut(s)	476
Bso31I	GGTCTC	2 cut(s)	635, 1097
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp1407I	TGTACA	1 cut(s)	34
Bsp143I	GATC	5 cut(s)	29, 97, 529, 592, 616
BspACI	CCGC	2 cut(s)	260, 1053
BspANI	GGCC	1 cut(s)	476
BspCNI	CTCAG	3 cut(s)	53, 229, 562
BspFNI	CGCG	1 cut(s)	58
BspHI	TCATGA	1 cut(s)	921
BspLI	GGNNCC	2 cut(s)	191, 477
BspMAI	CTGCAG	1 cut(s)	914
BspPI	GGATC	1 cut(s)	37
BspT107I	GGYRCC	1 cut(s)	189
BspTNI	GGTCTC	2 cut(s)	635, 1097
BsrDI	GCAATG	2 cut(s)	100, 619
BsrGI	TGTACA	1 cut(s)	34
BsrI	ACTGG	2 cut(s)	881, 979
BssECI	CCNNGG	3 cut(s)	467, 837, 1085
BssMI	GATC	5 cut(s)	29, 97, 529, 592, 616
BssSI	CACGAG	1 cut(s)	1116
BssT1I	CCWWGG	1 cut(s)	1085
Bst2BI	CACGAG	1 cut(s)	1116
Bst2UI	CCWGG	1 cut(s)	122
Bst4CI	ACNGT	9 cut(s)	23, 112, 194, 365, 734, 788, 838, 904, 1059
BstAUI	TGTACA	1 cut(s)	34
BstBAI	YACGTR	1 cut(s)	1169
BstC8I	GCNNGC	4 cut(s)	7, 105, 415, 917
BstDEI	CTNAG	4 cut(s)	40, 237, 549, 1134
BstDSI	CCRYGG	2 cut(s)	467, 837
BstF5I	GGATG	8 cut(s)	130, 477, 510, 613, 646, 724, 851, 1033
BstFNI	CGCG	1 cut(s)	58
BstHHI	GCGC	1 cut(s)	58
BstKTI	GATC	5 cut(s)	32, 100, 532, 595, 619
BstMAI	GTCTC	3 cut(s)	635, 1097, 1179
BstMBI	GATC	5 cut(s)	29, 97, 529, 592, 616
BstMWI	GCNNNNNNNGC	2 cut(s)	219, 482
BstNI	CCWGG	1 cut(s)	122
BstNSI	RCATGY	1 cut(s)	136
BstSCI	CCNGG	1 cut(s)	120
BstSFI	CTRYAG	1 cut(s)	910
BstSLI	GKGCMC	1 cut(s)	192
BstUI	CGCG	1 cut(s)	58
BstV1I	GCAGC	3 cut(s)	671, 924, 948
BstX2I	RGATCY	2 cut(s)	29, 592
BstYI	RGATCY	2 cut(s)	29, 592
Bsu36I	CCTNAGG	1 cut(s)	549
BsuRI	GGCC	1 cut(s)	476
BtgI	CCRYGG	2 cut(s)	467, 837
BtsCI	GGATG	8 cut(s)	130, 477, 510, 613, 646, 724, 851, 1033
BtsI	GCAGTG	1 cut(s)	307
BtsIMutI	CAGTG	4 cut(s)	307, 793, 888, 900
Cac8I	GCNNGC	4 cut(s)	7, 105, 415, 917
CaiI	CAGNNNCTG	1 cut(s)	284
CciI	TCATGA	1 cut(s)	921
CfoI	GCGC	1 cut(s)	58
Cfr13I	GGNCC	5 cut(s)	262, 475, 695, 745, 779
CseI	GACGC	1 cut(s)	395
Csp6I	GTAC	4 cut(s)	35, 431, 450, 834
CviAII	CATG	3 cut(s)	133, 637, 922
CviQI	GTAC	4 cut(s)	35, 431, 450, 834
DdeI	CTNAG	4 cut(s)	40, 237, 549, 1134
DpnI	GATC	5 cut(s)	31, 99, 531, 594, 618
DpnII	GATC	5 cut(s)	29, 97, 529, 592, 616
DraI	TTTAAA	1 cut(s)	589
DriI	GACNNNNNGTC	1 cut(s)	1110
Eam1105I	GACNNNNNGTC	1 cut(s)	1110
Eco130I	CCWWGG	1 cut(s)	1085
Eco31I	GGTCTC	2 cut(s)	635, 1097
Eco47I	GGWCC	4 cut(s)	262, 695, 745, 779
Eco81I	CCTNAGG	1 cut(s)	549
EcoO109I	RGGNCCY	1 cut(s)	695
EcoRI	GAATTC	1 cut(s)	600
EcoRII	CCWGG	1 cut(s)	120
EcoT14I	CCWWGG	1 cut(s)	1085
ErhI	CCWWGG	1 cut(s)	1085
FaeI	CATG	3 cut(s)	136, 640, 925
FaqI	GGGAC	2 cut(s)	1103, 1139
FatI	CATG	3 cut(s)	132, 636, 921
FbaI	TGATCA	1 cut(s)	97
Fnu4HI	GCNGC	3 cut(s)	685, 913, 937
FokI	GGATG	8 cut(s)	137, 484, 497, 620, 653, 731, 838, 1020
Fsp4HI	GCNGC	3 cut(s)	685, 913, 937
FspBI	CTAG	4 cut(s)	434, 596, 653, 930
GlaI	GCGC	1 cut(s)	57
GluI	GCNGC	3 cut(s)	685, 913, 937
GsuI	CTGGAG	1 cut(s)	974
HaeIII	GGCC	1 cut(s)	476
HgaI	GACGC	1 cut(s)	395
HhaI	GCGC	1 cut(s)	58
Hin1II	CATG	3 cut(s)	136, 640, 925
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HinfI	GANTC	8 cut(s)	160, 311, 440, 490, 554, 770, 925, 1091
HphI	GGTGA	4 cut(s)	340, 757, 804, 1053
Hpy166II	GTNNAC	4 cut(s)	37, 834, 907, 1115
Hpy188I	TCNGA	3 cut(s)	238, 504, 865
Hpy188III	TCNNGA	8 cut(s)	246, 551, 605, 702, 922, 953, 1037, 1046
Hpy8I	GTNNAC	4 cut(s)	37, 834, 907, 1115
Hpy99I	CGWCG	1 cut(s)	232
HpyAV	CCTTC	4 cut(s)	54, 263, 620, 708
HpyCH4III	ACNGT	9 cut(s)	23, 112, 194, 365, 734, 788, 838, 904, 1059
HpyCH4IV	ACGT	3 cut(s)	70, 657, 1168
HpyCH4V	TGCA	7 cut(s)	93, 107, 354, 510, 525, 912, 936
HpyF10VI	GCNNNNNNNGC	2 cut(s)	219, 482
HpyF3I	CTNAG	4 cut(s)	40, 237, 549, 1134
HpySE526I	ACGT	3 cut(s)	70, 657, 1168
Hsp92II	CATG	3 cut(s)	136, 640, 925
HspAI	GCGC	1 cut(s)	56
Ksp22I	TGATCA	1 cut(s)	97
Kzo9I	GATC	5 cut(s)	29, 97, 529, 592, 616
LmnI	GCTCC	1 cut(s)	370
Lsp1109I	GCAGC	3 cut(s)	671, 924, 948
LweI	GCATC	8 cut(s)	107, 321, 398, 519, 555, 818, 864, 1023
MaeI	CTAG	4 cut(s)	434, 596, 653, 930
MaeII	ACGT	3 cut(s)	70, 657, 1168
MaeIII	GTNAC	8 cut(s)	175, 194, 312, 359, 383, 763, 788, 1059
MalI	GATC	5 cut(s)	31, 99, 531, 594, 618
MboI	GATC	5 cut(s)	29, 97, 529, 592, 616
MboII	GAAGA	2 cut(s)	384, 570
MflI	RGATCY	2 cut(s)	29, 592
MhlI	GDGCHC	1 cut(s)	192
MluCI	AATT	6 cut(s)	249, 349, 445, 583, 600, 963
MlyI	GAGTC	5 cut(s)	320, 449, 563, 779, 1085
MmeI	TCCRAC	1 cut(s)	708
MnlI	CCTC	5 cut(s)	558, 709, 792, 949, 1141
MseI	TTAA	5 cut(s)	17, 588, 740, 962, 966
MslI	CAYNNNNRTG	1 cut(s)	168
MspR9I	CCNGG	1 cut(s)	122
Mva1269I	GAATGC	1 cut(s)	895
MvaI	CCWGG	1 cut(s)	122
MvnI	CGCG	1 cut(s)	58
MwoI	GCNNNNNNNGC	2 cut(s)	219, 482
NdeII	GATC	5 cut(s)	29, 97, 529, 592, 616
NlaIII	CATG	3 cut(s)	136, 640, 925
NlaIV	GGNNCC	2 cut(s)	191, 477
NmuCI	GTSAC	5 cut(s)	312, 383, 763, 788, 1059
NspI	RCATGY	1 cut(s)	136
PacI	TTAATTAA	1 cut(s)	966
PagI	TCATGA	1 cut(s)	921
PciI	ACATGT	1 cut(s)	132
PcsI	WCGNNNNNNNCGW	1 cut(s)	224
PctI	GAATGC	1 cut(s)	895
PfeI	GAWTC	3 cut(s)	160, 490, 925
PkrI	GCNGC	3 cut(s)	686, 914, 938
PleI	GAGTC	5 cut(s)	319, 448, 562, 778, 1085
PpsI	GAGTC	5 cut(s)	319, 448, 562, 778, 1085
Ppu21I	YACGTR	1 cut(s)	1169
PpuMI	RGGWCCY	1 cut(s)	695
PscI	ACATGT	1 cut(s)	132
PshBI	ATTAAT	3 cut(s)	740, 962, 966
Psp5II	RGGWCCY	1 cut(s)	695
Psp6I	CCWGG	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	120
PspN4I	GGNNCC	2 cut(s)	191, 477
PspPI	GGNCC	5 cut(s)	262, 475, 695, 745, 779
PspPPI	RGGWCCY	1 cut(s)	695
PstI	CTGCAG	1 cut(s)	914
PstNI	CAGNNNCTG	1 cut(s)	284
PsuI	RGATCY	2 cut(s)	29, 592
RsaI	GTAC	4 cut(s)	36, 432, 451, 835
RsaNI	GTAC	4 cut(s)	35, 431, 450, 834
RseI	CAYNNNNRTG	1 cut(s)	168
SaqAI	TTAA	5 cut(s)	17, 588, 740, 962, 966
SatI	GCNGC	3 cut(s)	685, 913, 937
Sau3AI	GATC	5 cut(s)	29, 97, 529, 592, 616
Sau96I	GGNCC	5 cut(s)	262, 475, 695, 745, 779
ScaI	AGTACT	1 cut(s)	432
SchI	GAGTC	5 cut(s)	320, 449, 563, 779, 1085
ScrFI	CCNGG	1 cut(s)	122
SduI	GDGCHC	1 cut(s)	192
SfaNI	GCATC	8 cut(s)	107, 321, 398, 519, 555, 818, 864, 1023
SfcI	CTRYAG	1 cut(s)	910
SinI	GGWCC	4 cut(s)	262, 695, 745, 779
SmiMI	CAYNNNNRTG	1 cut(s)	168
Sse9I	AATT	6 cut(s)	249, 349, 445, 583, 600, 963
SsiI	CCGC	2 cut(s)	260, 1053
SspMI	CTAG	4 cut(s)	434, 596, 653, 930
StyD4I	CCNGG	1 cut(s)	120
StyI	CCWWGG	1 cut(s)	1085
TaaI	ACNGT	9 cut(s)	23, 112, 194, 365, 734, 788, 838, 904, 1059
TaiI	ACGT	3 cut(s)	73, 660, 1171
TaqI	TCGA	4 cut(s)	115, 245, 557, 1094
TasI	AATT	6 cut(s)	249, 349, 445, 583, 600, 963
TatI	WGTACW	3 cut(s)	34, 430, 449
TfiI	GAWTC	3 cut(s)	160, 490, 925
Tru1I	TTAA	5 cut(s)	17, 588, 740, 962, 966
Tru9I	TTAA	5 cut(s)	17, 588, 740, 962, 966
TscAI	CASTG	4 cut(s)	307, 793, 888, 907
TseFI	GTSAC	5 cut(s)	312, 383, 763, 788, 1059
TseI	GCWGC	3 cut(s)	684, 912, 936
Tsp45I	GTSAC	5 cut(s)	312, 383, 763, 788, 1059
TspDTI	ATGAA	4 cut(s)	441, 902, 938, 974
TspGWI	ACGGA	1 cut(s)	216
TspRI	CASTG	4 cut(s)	307, 793, 888, 907
VpaK11BI	GGWCC	4 cut(s)	262, 695, 745, 779
VspI	ATTAAT	3 cut(s)	740, 962, 966
XapI	RAATTY	3 cut(s)	249, 583, 600
XceI	RCATGY	1 cut(s)	136
XspI	CTAG	4 cut(s)	434, 596, 653, 930
ZrmI	AGTACT	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.