Rmu_sc0000483.1_g000027

Major latex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000483.1
OG0017293
Physical Location & Seq
Forward (+)
122792 .. 125241
2450 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 822 bp
atgcagtccaagcttgaagacaacgaagaaggcgaggataacgagctcaccggcgacgaaggcttcagatccccttgggtccttgccctcctgtcgctctctcctcgttgtagtcggacagacaacggagctgatcttcatgctcgccgactgtggcttctgcgatcagaaggtttggattggagagctcggtcggcgatctccttctccttgattccactacagccacagcaaatcaatcatctccggcaagattcaagtcggattctggggatttcgaagctgggatatccggccgatgatcggaatccggcggccagtgaccggattccggcgaaaattgaccggattccggcgaagttggccggtgaccggattccggcggccggtgatcggactccggcgaagtcccctatgacgggaaagcttgtagccaaggagataatcgaagccatagacagggagaacaattcggtgatgacttgggaagtaattggaggagacctacttgagcattacaagtgcttcaagttcattctgcatcttaccactcaaatggtgatcaggcctcacctatggtgcattggattttggaatatgaaaaggtggatgacaatgttccagaaccccatgctttgctctagttggggtcagctgctcaccatccatatacctgtccgaatggagaatctctttggcaaccaaaaagatggcctcgacgtccctcagaatctagccttccttttctttccatttgcagtcgtcagcgtcgtcccaccccggatactttggtgccacgttcacgctcagcacgcctcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

273

Amino Acids

31.01

Weight (kDa)

7.73

Isoelectric Point (pI)

52.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 144 - 184 8.3e-06 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017293)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g32801
rosa_laevigata RLG00000034237
rosa_multiflora Rmu_sc0000483.1_g000027 Rmu_sc0000551.1_g000005
rosa_roxburghii Rroxscaffold_1G00012730 Rroxscaffold_3G00229660
rosa_samantha Rh1CG405100 Rh5AG343100 Rh6CG223000 Rh7AG416700 Rh7DG365500 Rh7DG410900
rosa_wichuraiana Rw7G034500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 723
AccB1I GGYRCC 1 cut(s) 792
AciI CCGC 2 cut(s) 314, 383
AclWI GGATC 1 cut(s) 63
AcoI YGGCCR 4 cut(s) 294, 315, 363, 384
AcuI CTGAAG 1 cut(s) 49
AcyI GRCGYC 1 cut(s) 720
AgsI TTSAA 3 cut(s) 17, 258, 529
AluBI AGCT 7 cut(s) 13, 46, 131, 188, 283, 427, 655
AluI AGCT 7 cut(s) 13, 46, 131, 188, 283, 427, 655
Alw21I GWGCWC 2 cut(s) 48, 190
Alw26I GTCTC 1 cut(s) 495
AlwI GGATC 1 cut(s) 63
AoxI GGCC 6 cut(s) 294, 315, 363, 384, 566, 712
ApeKI GCWGC 1 cut(s) 655
AspS9I GGNCC 1 cut(s) 79
AsuC2I CCSGG 1 cut(s) 781
AsuHPI GGTGA 7 cut(s) 40, 380, 401, 487, 563, 571, 652
AsuII TTCGAA 1 cut(s) 278
AvaII GGWCC 1 cut(s) 79
BaeI ACNNNNGTAYC 2 cut(s) 776, 809
BanI GGYRCC 1 cut(s) 792
BanII GRGCYC 2 cut(s) 48, 190
BbsI GAAGAC 1 cut(s) 24
Bbv12I GWGCWC 2 cut(s) 48, 190
BbvI GCAGC 1 cut(s) 642
BccI CCATC 2 cut(s) 671, 704
BciVI GTATCC 1 cut(s) 777
BclI TGATCA 1 cut(s) 561
BcnI CCSGG 1 cut(s) 781
BcoDI GTCTC 1 cut(s) 495
BfaI CTAG 2 cut(s) 642, 734
BfmI CTRYAG 1 cut(s) 221
BfuI GTATCC 1 cut(s) 777
BisI GCNGC 3 cut(s) 315, 384, 656
BlpI GCTNAGC 1 cut(s) 807
BlsI GCNGC 3 cut(s) 316, 385, 657
Bme1390I CCNGG 1 cut(s) 781
Bme18I GGWCC 1 cut(s) 79
BmgT120I GGNCC 1 cut(s) 79
BmiI GGNNCC 2 cut(s) 80, 794
BmrFI CCNGG 1 cut(s) 781
BmsI GCATC 1 cut(s) 550
BpiI GAAGAC 1 cut(s) 24
Bpu1102I GCTNAGC 1 cut(s) 807
Bpu14I TTCGAA 1 cut(s) 278
BpuEI CTTGAG 1 cut(s) 530
BpuMI CCSGG 1 cut(s) 781
BsaBI GATNNNNATC 1 cut(s) 306
BsaHI GRCGYC 1 cut(s) 720
BsaI GGTCTC 1 cut(s) 495
BsaJI CCNNGG 3 cut(s) 74, 435, 779
BsaWI WCCGGW 3 cut(s) 324, 345, 372
Bse118I RCCGGY 3 cut(s) 50, 365, 386
Bse1I ACTGG 1 cut(s) 318
Bse8I GATNNNNATC 1 cut(s) 306
BseDI CCNNGG 3 cut(s) 74, 435, 779
BseGI GGATG 2 cut(s) 615, 663
BseJI GATNNNNATC 1 cut(s) 306
BseMII CTCAG 2 cut(s) 740, 821
BseNI ACTGG 1 cut(s) 318
BseRI GAGGAG 2 cut(s) 93, 513
BseX3I CGGCCG 2 cut(s) 294, 384
BseXI GCAGC 1 cut(s) 642
BseYI CCCAGC 1 cut(s) 283
Bsh1285I CGRYCG 3 cut(s) 194, 297, 387
BshFI GGCC 6 cut(s) 296, 317, 365, 386, 568, 714
BshNI GGYRCC 1 cut(s) 792
BsiEI CGRYCG 3 cut(s) 194, 297, 387
BsiHKAI GWGCWC 2 cut(s) 48, 190
BslFI GGGAC 3 cut(s) 394, 707, 758
BsmAI GTCTC 1 cut(s) 495
BsmFI GGGAC 3 cut(s) 394, 707, 758
BsnI GGCC 6 cut(s) 296, 317, 365, 386, 568, 714
Bso31I GGTCTC 1 cut(s) 495
Bsp119I TTCGAA 1 cut(s) 278
Bsp1286I GDGCHC 2 cut(s) 48, 190
Bsp143I GATC 7 cut(s) 68, 133, 164, 198, 301, 391, 561
Bsp1720I GCTNAGC 1 cut(s) 807
BspACI CCGC 2 cut(s) 314, 383
BspANI GGCC 6 cut(s) 296, 317, 365, 386, 568, 714
BspCNI CTCAG 2 cut(s) 739, 820
BspLI GGNNCC 2 cut(s) 80, 794
BspPI GGATC 1 cut(s) 63
BspT104I TTCGAA 1 cut(s) 278
BspT107I GGYRCC 1 cut(s) 792
BspTNI GGTCTC 1 cut(s) 495
BsrFI RCCGGY 3 cut(s) 50, 365, 386
BsrI ACTGG 1 cut(s) 318
BssAI RCCGGY 3 cut(s) 50, 365, 386
BssECI CCNNGG 3 cut(s) 74, 435, 779
BssMI GATC 7 cut(s) 68, 133, 164, 198, 301, 391, 561
BssNI GRCGYC 1 cut(s) 720
BssT1I CCWWGG 2 cut(s) 74, 435
Bst4CI ACNGT 1 cut(s) 153
BstACI GRCGYC 1 cut(s) 720
BstBI TTCGAA 1 cut(s) 278
BstC8I GCNNGC 2 cut(s) 145, 813
BstDEI CTNAG 3 cut(s) 726, 807, 819
BstEII GGTNACC 1 cut(s) 368
BstF5I GGATG 2 cut(s) 615, 663
BstKTI GATC 7 cut(s) 71, 136, 167, 201, 304, 394, 564
BstMAI GTCTC 1 cut(s) 495
BstMBI GATC 7 cut(s) 68, 133, 164, 198, 301, 391, 561
BstMCI CGRYCG 3 cut(s) 194, 297, 387
BstMWI GCNNNNNNNGC 5 cut(s) 10, 60, 194, 362, 812
BstPI GGTNACC 1 cut(s) 368
BstSCI CCNGG 1 cut(s) 779
BstSFI CTRYAG 1 cut(s) 221
BstV1I GCAGC 1 cut(s) 642
BstV2I GAAGAC 1 cut(s) 24
BstX2I RGATCY 1 cut(s) 68
BstXI CCANNNNNNTGG 2 cut(s) 556, 710
BstYI RGATCY 1 cut(s) 68
BstZI CGGCCG 2 cut(s) 294, 384
BsuI GTATCC 1 cut(s) 777
BsuRI GGCC 6 cut(s) 296, 317, 365, 386, 568, 714
BtsCI GGATG 2 cut(s) 615, 663
BtsIMutI CAGTG 1 cut(s) 325
Cac8I GCNNGC 2 cut(s) 145, 813
Cfr10I RCCGGY 3 cut(s) 50, 365, 386
Cfr13I GGNCC 1 cut(s) 79
CseI GACGC 1 cut(s) 757
CviAII CATG 2 cut(s) 140, 631
DdeI CTNAG 3 cut(s) 726, 807, 819
DpnI GATC 7 cut(s) 70, 135, 166, 200, 303, 393, 563
DpnII GATC 7 cut(s) 68, 133, 164, 198, 301, 391, 561
EaeI YGGCCR 4 cut(s) 294, 315, 363, 384
EagI CGGCCG 2 cut(s) 294, 384
Ecl136II GAGCTC 2 cut(s) 46, 188
EclXI CGGCCG 2 cut(s) 294, 384
Eco130I CCWWGG 2 cut(s) 74, 435
Eco147I AGGCCT 1 cut(s) 568
Eco24I GRGCYC 2 cut(s) 48, 190
Eco31I GGTCTC 1 cut(s) 495
Eco32I GATATC 1 cut(s) 290
Eco47I GGWCC 1 cut(s) 79
Eco52I CGGCCG 2 cut(s) 294, 384
Eco53kI GAGCTC 2 cut(s) 46, 188
Eco57I CTGAAG 1 cut(s) 49
Eco91I GGTNACC 1 cut(s) 368
EcoICRI GAGCTC 2 cut(s) 46, 188
EcoO109I RGGNCCY 1 cut(s) 79
EcoO65I GGTNACC 1 cut(s) 368
EcoRV GATATC 1 cut(s) 290
EcoT14I CCWWGG 2 cut(s) 74, 435
EcoT38I GRGCYC 2 cut(s) 48, 190
ErhI CCWWGG 2 cut(s) 74, 435
FaeI CATG 2 cut(s) 143, 634
FaiI YATR 8 cut(s) 141, 416, 455, 577, 599, 632, 669, 671
FaqI GGGAC 3 cut(s) 394, 707, 758
FatI CATG 2 cut(s) 139, 630
FbaI TGATCA 1 cut(s) 561
Fnu4HI GCNGC 3 cut(s) 315, 384, 656
FokI GGATG 2 cut(s) 622, 650
FriOI GRGCYC 2 cut(s) 48, 190
Fsp4HI GCNGC 3 cut(s) 315, 384, 656
FspBI CTAG 2 cut(s) 642, 734
GluI GCNGC 3 cut(s) 315, 384, 656
GsaI CCCAGC 1 cut(s) 287
HaeIII GGCC 6 cut(s) 296, 317, 365, 386, 568, 714
HgaI GACGC 1 cut(s) 757
Hin1I GRCGYC 1 cut(s) 720
Hin1II CATG 2 cut(s) 143, 634
HindIII AAGCTT 2 cut(s) 11, 425
HphI GGTGA 7 cut(s) 40, 380, 401, 487, 563, 571, 652
Hpy166II GTNNAC 1 cut(s) 802
Hpy188I TCNGA 8 cut(s) 68, 117, 169, 264, 306, 396, 680, 729
Hpy188III TCNNGA 1 cut(s) 622
Hpy8I GTNNAC 1 cut(s) 802
Hpy99I CGWCG 3 cut(s) 59, 722, 773
HpyAV CCTTC 5 cut(s) 23, 53, 164, 214, 748
HpyCH4III ACNGT 1 cut(s) 153
HpyCH4IV ACGT 2 cut(s) 720, 798
HpyCH4V TGCA 4 cut(s) 4, 541, 582, 758
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 60, 194, 362, 812
HpyF3I CTNAG 3 cut(s) 726, 807, 819
HpySE526I ACGT 2 cut(s) 720, 798
Hsp92I GRCGYC 1 cut(s) 720
Hsp92II CATG 2 cut(s) 143, 634
Ksp22I TGATCA 1 cut(s) 561
Kzo9I GATC 7 cut(s) 68, 133, 164, 198, 301, 391, 561
LmnI GCTCC 1 cut(s) 128
Lsp1109I GCAGC 1 cut(s) 642
LweI GCATC 1 cut(s) 550
MaeI CTAG 2 cut(s) 642, 734
MaeII ACGT 2 cut(s) 720, 798
MaeIII GTNAC 2 cut(s) 320, 368
MalI GATC 7 cut(s) 70, 135, 166, 200, 303, 393, 563
MboI GATC 7 cut(s) 68, 133, 164, 198, 301, 391, 561
MboII GAAGA 3 cut(s) 29, 38, 128
MflI RGATCY 1 cut(s) 68
MhlI GDGCHC 2 cut(s) 48, 190
MluCI AATT 3 cut(s) 339, 469, 492
MlyI GAGTC 1 cut(s) 391
MmeI TCCRAC 2 cut(s) 95, 242
MnlI CCTC 7 cut(s) 28, 98, 114, 491, 579, 725, 735
MslI CAYNNNNRTG 1 cut(s) 554
MspA1I CMGCKG 1 cut(s) 655
MspR9I CCNGG 1 cut(s) 781
MwoI GCNNNNNNNGC 5 cut(s) 10, 60, 194, 362, 812
NciI CCSGG 1 cut(s) 781
NdeII GATC 7 cut(s) 68, 133, 164, 198, 301, 391, 561
NlaIII CATG 2 cut(s) 143, 634
NlaIV GGNNCC 2 cut(s) 80, 794
NmuCI GTSAC 2 cut(s) 320, 368
NspV TTCGAA 1 cut(s) 278
PceI AGGCCT 1 cut(s) 568
PcsI WCGNNNNNNNCGW 2 cut(s) 30, 768
PfeI GAWTC 9 cut(s) 214, 254, 265, 307, 328, 349, 376, 688, 730
PkrI GCNGC 3 cut(s) 316, 385, 657
PleI GAGTC 1 cut(s) 391
PpsI GAGTC 1 cut(s) 391
PpuMI RGGWCCY 1 cut(s) 79
Psp124BI GAGCTC 2 cut(s) 48, 190
Psp5II RGGWCCY 1 cut(s) 79
PspEI GGTNACC 1 cut(s) 368
PspFI CCCAGC 1 cut(s) 283
PspN4I GGNNCC 2 cut(s) 80, 794
PspPI GGNCC 1 cut(s) 79
PspPPI RGGWCCY 1 cut(s) 79
PsuI RGATCY 1 cut(s) 68
PvuII CAGCTG 1 cut(s) 655
RseI CAYNNNNRTG 1 cut(s) 554
SacI GAGCTC 2 cut(s) 48, 190
SatI GCNGC 3 cut(s) 315, 384, 656
Sau3AI GATC 7 cut(s) 68, 133, 164, 198, 301, 391, 561
Sau96I GGNCC 1 cut(s) 79
SchI GAGTC 1 cut(s) 391
ScrFI CCNGG 1 cut(s) 781
SduI GDGCHC 2 cut(s) 48, 190
SfaNI GCATC 1 cut(s) 550
SfcI CTRYAG 1 cut(s) 221
SfuI TTCGAA 1 cut(s) 278
SgrAI CRCCGGYG 1 cut(s) 50
SinI GGWCC 1 cut(s) 79
SmiMI CAYNNNNRTG 1 cut(s) 554
SmlI CTYRAG 1 cut(s) 509
SmoI CTYRAG 1 cut(s) 509
Sse9I AATT 3 cut(s) 339, 469, 492
SseBI AGGCCT 1 cut(s) 568
SsiI CCGC 2 cut(s) 314, 383
SspMI CTAG 2 cut(s) 642, 734
SstI GAGCTC 2 cut(s) 48, 190
StuI AGGCCT 1 cut(s) 568
StyD4I CCNGG 1 cut(s) 779
StyI CCWWGG 2 cut(s) 74, 435
TaaI ACNGT 1 cut(s) 153
TaiI ACGT 2 cut(s) 723, 801
TaqI TCGA 3 cut(s) 278, 447, 717
TaqII GACCGA 1 cut(s) 180
TasI AATT 3 cut(s) 339, 469, 492
TauI GCSGC 2 cut(s) 317, 386
TfiI GAWTC 9 cut(s) 214, 254, 265, 307, 328, 349, 376, 688, 730
TscAI CASTG 1 cut(s) 325
TseFI GTSAC 2 cut(s) 320, 368
TseI GCWGC 1 cut(s) 655
Tsp45I GTSAC 2 cut(s) 320, 368
TspDTI ATGAA 3 cut(s) 128, 523, 614
TspGWI ACGGA 1 cut(s) 141
TspRI CASTG 1 cut(s) 325
VpaK11BI GGWCC 1 cut(s) 79
XspI CTAG 2 cut(s) 642, 734
ZraI GACGTC 1 cut(s) 721
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.