Rmu_sc0000641.1_g000029

WD40 repeats

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000641.1
OG0008489
Physical Location & Seq
Reverse (-)
99230 .. 111295
12066 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 4833 bp
atggagtggacgacggtgcagcatctcgatctacgacacgtcgcgcggggcaccaaacccctccagcctcatgccgccgcctttcatccgcatcaggccctcgtcgccgtcgccatcggcaactacatcgtcgaaatggatgcgttgacgggaagcaagattgcatctattgatatcggtatacctgttatccgcatggcatatagtcccacgagtggccattctgtcatagcgatccatgaggatggtactattcgctcctgtgattttgatgctgaacaaacttgcgtgttgcattcacctgagaagaagttggatcaaattactcctgatacagaagtccatcttgctttgacacctctccaacctgtagtatttttcgggttccataaaaggatgagtgttacagttgttgggactgttgaaggaggaagggcaccaacaaaaataaagacagatttgaaaaaacctattgtgaatcttgcatgccaccctcgccatcctgtcctgtatgttgcttatgcagatggtttgattcgagcatacaacattcacacctatgcagttcattacaccttacagatcgacaacaccataaagcttatcggtgctggtgcgtttggttttcacccaacattggagtggatttttgttggtgatagacggggtacacttcttgcatgggatgtttctactgagagacctagtatgattggaattacacaagtgggttcccaaccaatttcttcagtttcttggctaccaatgttgcggttacttgtaactgtaaccagggatggaactcttcaagtgtggaagacacgtgttataattaatccaaatagacctccaatgcaagcgaatttctttgaacctgctgcaattgaatcacttgacatccctcgcatactttctcaacagggtggagaagcagcttaccctttaccgcgtatcaaaactttagaagttcactccaaactgaatttggcagcgcttctgttcataaatatgacaggtggagacaatgtgaaaaatagggccgcatacactagggaaggaaggaaacaactgtttgcagttttgcaaggggcaagaggatcctcagcgtctgttttgaaagaaaagctttcatctttggggtcgtctggaatattagctgaacatcaacttcaagctcaactacaagaacatcatatgaaagggcacagtcatcttacaatatcagacattgctcggaaggcttttctccacagtcatttcatggaaggtcatgccaaaagtgccccaatatctcggctgcctctaattactattgtggattctaagcatcatctgaaggatgctcctgtatgtcagccatttcatctggagctaaatttcttcagtaaagagaatcgggttcttcattatcctgtcagagccttttgtatagacgggtcaaaccttatggcgtataatctgtctcttggagcagatagtatctacaagagacttcatacatcggttcctgcaaatgtggaataccatccaaagtacctgttctacagtaaaagacggcgcatatttcttgttgtctatgaatttagtggtgctacaaatgaagttgtgctttattttgaaaatactgattctcaggcagcaaacagtaaatgcagcacagtaaaaggtcgagatgcagcatttattggtcctgatgagaatcagtttgcaattcttgatgatgataagactggactggctttacatatactgcccggaaagactactccagaagctaatgaaaaaattctacttgctgatgagaaccaatctatgaatactgatactgctgccccccgaggtccaatgcaatttatgtttgaaagtgaagtggatcgaatcttttccactccaatagagtcaactctgatgtttgcttctcatggggatcagattggcttggcaaagctggttcaaggataccgcctttctaatgctggtggtcattatatagcaacaacaaatgaggggagaaagtcaatcaaattgaaacttaatgaaattgtacttcaggttcactggcaagaaactcttaggggctatgttgcaggaatattaactacacaaagagttcttatagtttcagcagatctagatatactggcaggaagttctgcaaaatttgataaaggacttccttcaatatccttattcaacatcttggtgttaattagtgtgcttggttgggatgggaaagtgaggactatactctctctcagtatgccttatgcagttttggttggtgcgctgaatgaccggttgttgcttgctaccccaacagaaataaatcccagacaaaagaagggagttgagattaagagttgtcttgttgggctgcttgaacctcttcttattggatttgccacaatgcaagaaagatttgagcagaagcttgacctgccagagatattgtatcaaataacatcaaggtttgacagcctgcgtatcactccaaggtctcttgatattctggccagaggctctcctgtttgtggagatctttctgtctcattatctcaagcaggaccacagttcacacaggtattgcgtggtgtctatgctatcaaagctctccgcttttctactgctttatctgttttaaaagatgaatttctgcgctctagagattatccaaggtgtcctccaacctctcatctgttccaccagttccggcagttgggctatgcatgtatcaagtttggtcagtttgatagtgcaaaagagacctttgaagtcatagcagattatgaaagtatgctcgatctgtttatatgccaccttaaccccagtgccatgcggcgtcttgctcaaaaattggaagaagatggcactgattcagaactgaggagatactgtgagaggatcttaagagtgcgctctactggatggactcaaggcatttttgctaactttgctgctgagagtatggttccgaagggtcctgaatggggtggtgggaactgggaaatcaaaaccccaactaatatgaaggcaatacctcaatgggaactggctgctgaggtgatgccatacatgaggactgatgacggtgccattccatccattattgctgatcatattggtgtttacttgggttccatcagaggacgaggcaacattgtagaagtaagggaagatagcttggtcaaagctttcaaacccgcaggtggtgataataagccaaatggtcttcaagactcttcagtgacatctacaactaatatgtccaagggagtgcctggtggtggttcattgatgggtcttgaaacacttaccaaacaagtagccagttccaccgcagcagatgaacaggctaaagctgaagaagaatttaagaaatctatgtatggtgcagctgatggtagcagcagtgatgaggagggaacttcaaaaactaaaaggttacagattcggataagagacaagccaattgcttctaccacagtggatgttgacaagatcaaagaagccacgaagcaattcaaacttggtgaggggttggctcgccccagcagaaccaagtcattgactggatcccaggacctaagccagatgttatcccaaccgcctccagccagtagtggttttccaaatgctcgtgtaggttccgcccctggtgatctgtttggtatggatgcaccaacacaacctgcaactgtatcacagcaagctcctgtaccaggtgtgggaatgacagctggaccaattccagaggactttttccaaaataccataccgtccttccaggttgcagcctcactgccccctcctggaacctatctttcaaagatggatcaagcctctcagggggctgaaagaaatacggaaacacttaaccaggtcaatgcacccaaagccaatatagatcttcctgatggtggtgttccccctcaagctactcaacagggtgttccactggggtcctttggacttcctgatggtggggttccaccacaagccccaagccaggctgctgttcaacagacgcagattcagtcagctcaacctccaatatccactcagcctcttgatctaagtgcccttggcattccgaattctgccgataatggaaaacctacggggcagcctccttcaccaccgtctgctgtgcgtcctggacaggttccccgtggagcagccgctcctatatgctttaagactggcgtatcccaccttgagcagaatcaactttcggacgcattatcctgcttcgatgaagcttttcttgcactagcgaaggaccactctcgcggagctgatatcaaagcacaagcgaccatctgtgctcaatataagatagcagtcactcttcttcaggaaattggccggcttcagagagtccatggccctagtgcaattagtgcaaaagatgagatggcaagactagcacgccacctgggttctttgcctcttctggcaaagcacaggataaattgtattcgaactgccattaagaggaatatggaagtgcaaaattatgcttattcaaaacagatgcttgaactcctgctgtccaaagcacctccaagtaagcaggatgagctaaggagcttggttgacatgtgtggtcaaaggggtctgtccaacaagtccattgatcctcttgaagacccttcccagttctgtgcggccacacttagccgtctgtcaaccattggatacgatgtttgtgacctttgtggggctaaattttcggctctcgcaacgcctggttgcattatatgcggtatgggaagcatcaaaagatcagatgcacttacagggccggggcctgttccttcgccgttcggttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COPI_C

Protein Analysis

1610

Amino Acids

175.09

Weight (kDa)

8.39

Isoelectric Point (pI)

40.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR36-Utp21_1st PF25171 72 - 272 3.4e-06 WDR36/Utp21 first beta-propeller
Beta-prop_THOC3 PF25174 155 - 275 3.8e-06 THOC3 beta-propeller domain
WD40_CDC20-Fz PF24807 155 - 277 1.7e-06 CDC20/Fizzy WD40 domain
Beta-prop_EML_2 PF23414 161 - 274 5.3e-06 Echinoderm microtubule-associated protein second beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 830
AarI CACCTGC 1 cut(s) 3194
Acc36I ACCTGC 4 cut(s) 883, 2445, 3194, 3697
AccB1I GGYRCC 3 cut(s) 50, 436, 3089
AccBSI CCGCTC 1 cut(s) 4181
AccI GTMKAC 1 cut(s) 181
AccII CGCG 4 cut(s) 44, 46, 949, 4290
AcoI YGGCCR 4 cut(s) 217, 2511, 4363, 4668
AcuI CTGAAG 8 cut(s) 732, 1355, 1366, 2033, 3225, 3381, 4337, 4355
AcvI CACGTG 1 cut(s) 824
AcyI GRCGYC 1 cut(s) 2839
AfaI GTAC 5 cut(s) 250, 670, 1535, 2046, 3717
AfeI AGCGCT 1 cut(s) 993
AflII CTTAAG 1 cut(s) 2905
AflIII ACRYGT 4 cut(s) 37, 821, 823, 4599
AgeI ACCGGT 1 cut(s) 2295
AjiI CACGTC 1 cut(s) 40
Alw21I GWGCWC 1 cut(s) 4327
Alw26I GTCTC 8 cut(s) 694, 1014, 1467, 1483, 2502, 2551, 2756, 3453
AlwNI CAGNNNCTG 1 cut(s) 1109
Ama87I CYCGRG 1 cut(s) 1836
Aor51HI AGCGCT 1 cut(s) 993
AoxI GGCC 9 cut(s) 96, 217, 1038, 2511, 4363, 4384, 4668, 4802, 4808
AseI ATTAAT 1 cut(s) 834
AsiGI ACCGGT 1 cut(s) 2295
Asp700I GAANNNNTTC 5 cut(s) 1785, 1882, 2385, 3518, 4260
AspLEI GCGC 6 cut(s) 46, 994, 1560, 2287, 2658, 2916
AsuC2I CCSGG 2 cut(s) 1755, 4806
AsuHPI GGTGA 8 cut(s) 291, 620, 668, 3073, 3221, 3542, 3668, 4125
AsuII TTCGAA 1 cut(s) 4480
AvaI CYCGRG 1 cut(s) 1836
AvaII GGWCC 8 cut(s) 1688, 1841, 2564, 2978, 3580, 3740, 3960, 4279
BaeGI GKGCMC 5 cut(s) 53, 439, 1206, 1285, 4081
BaeI ACNNNNGTAYC 4 cut(s) 324, 357, 4188, 4221
BalI TGGCCA 2 cut(s) 219, 2513
BamHI GGATCC 2 cut(s) 1097, 3572
BanI GGYRCC 3 cut(s) 50, 436, 3089
BauI CACGAG 2 cut(s) 211, 3636
BbrPI CACGTG 1 cut(s) 824
BbsI GAAGAC 3 cut(s) 824, 3221, 4653
Bbv12I GWGCWC 1 cut(s) 4327
BbvCI CCTCAGC 2 cut(s) 1102, 3057
BceAI ACGGC 4 cut(s) 92, 1571, 4665, 4807
BcgI CGANNNNNNTGC 4 cut(s) 109, 122, 143, 156
BciVI GTATCC 3 cut(s) 1952, 4216, 4691
BclI TGATCA 1 cut(s) 3112
BcnI CCSGG 2 cut(s) 1755, 4806
BcoDI GTCTC 8 cut(s) 694, 1014, 1467, 1483, 2502, 2551, 2756, 3453
BfaI CTAG 7 cut(s) 705, 1050, 2132, 2661, 4271, 4389, 4424
BfmI CTRYAG 2 cut(s) 369, 1543
BfoI RGCGCY 1 cut(s) 995
BfrI CTTAAG 1 cut(s) 2905
BfuAI ACCTGC 4 cut(s) 883, 2445, 3194, 3697
BfuI GTATCC 3 cut(s) 1952, 4216, 4691
BglII AGATCT 3 cut(s) 2128, 2536, 3904
Bme18I GGWCC 8 cut(s) 1688, 1841, 2564, 2978, 3580, 3740, 3960, 4279
BmeT110I CYCGRG 1 cut(s) 1836
BmgBI CACGTC 1 cut(s) 40
BmrI ACTGGG 4 cut(s) 2820, 3010, 3965, 4651
BmuI ACTGGG 4 cut(s) 2820, 3010, 3965, 4651
BpiI GAAGAC 3 cut(s) 824, 3221, 4653
BpmI CTGGAG 4 cut(s) 47, 1388, 1752, 3594
Bpu10I CCTNAGC 4 cut(s) 1102, 3057, 3584, 4583
Bpu14I TTCGAA 1 cut(s) 4480
BpuEI CTTGAG 4 cut(s) 2541, 2916, 3915, 4235
BpuMI CCSGG 2 cut(s) 1755, 4806
BsaAI YACGTR 1 cut(s) 824
BsaBI GATNNNNATC 1 cut(s) 1698
BsaHI GRCGYC 1 cut(s) 2839
BsaI GGTCTC 3 cut(s) 694, 2502, 2756
BsaWI WCCGGW 1 cut(s) 2295
BsaXI ACNNNNNCTCC 4 cut(s) 1011, 1041, 2878, 2908
Bse118I RCCGGY 2 cut(s) 2295, 4365
Bse3DI GCAATG 1 cut(s) 1227
Bse8I GATNNNNATC 1 cut(s) 1698
BseJI GATNNNNATC 1 cut(s) 1698
BseMI GCAATG 1 cut(s) 1227
BseRI GAGGAG 2 cut(s) 2899, 3431
BseSI GKGCMC 5 cut(s) 53, 439, 1206, 1285, 4081
BseYI CCCAGC 1 cut(s) 3548
BsgI GTGCAG 2 cut(s) 38, 3411
Bsh1236I CGCG 4 cut(s) 44, 46, 949, 4290
BshFI GGCC 9 cut(s) 98, 219, 1040, 2513, 4365, 4386, 4670, 4804, 4810
BshNI GGYRCC 3 cut(s) 50, 436, 3089
BshTI ACCGGT 1 cut(s) 2295
BsiHKAI GWGCWC 1 cut(s) 4327
BsiHKCI CYCGRG 1 cut(s) 1836
BsiSI CCGG 5 cut(s) 1755, 2296, 2710, 4366, 4805
BslFI GGGAC 2 cut(s) 192, 430
BsmAI GTCTC 8 cut(s) 694, 1014, 1467, 1483, 2502, 2551, 2756, 3453
BsmFI GGGAC 2 cut(s) 192, 430
BsmI GAATGC 2 cut(s) 295, 4086
BsnI GGCC 9 cut(s) 98, 219, 1040, 2513, 4365, 4386, 4670, 4804, 4810
Bso31I GGTCTC 3 cut(s) 694, 2502, 2756
BsoBI CYCGRG 1 cut(s) 1836
Bsp119I TTCGAA 1 cut(s) 4480
Bsp1286I GDGCHC 6 cut(s) 53, 439, 1206, 1285, 4081, 4327
Bsp19I CCATGG 1 cut(s) 4381
BspANI GGCC 9 cut(s) 98, 219, 1040, 2513, 4365, 4386, 4670, 4804, 4810
BspFNI CGCG 4 cut(s) 44, 46, 949, 4290
BspMI ACCTGC 4 cut(s) 883, 2445, 3194, 3697
BspT104I TTCGAA 1 cut(s) 4480
BspT107I GGYRCC 3 cut(s) 50, 436, 3089
BspTI CTTAAG 1 cut(s) 2905
BspTNI GGTCTC 3 cut(s) 694, 2502, 2756
BsrBI CCGCTC 1 cut(s) 4181
BsrDI GCAATG 1 cut(s) 1227
BsrFI RCCGGY 2 cut(s) 2295, 4365
BssAI RCCGGY 2 cut(s) 2295, 4365
BssNAI GTATAC 1 cut(s) 182
BssNI GRCGYC 1 cut(s) 2839
BssSI CACGAG 2 cut(s) 211, 3636
BssT1I CCWWGG 5 cut(s) 2492, 2672, 3267, 4081, 4381
Bst1107I GTATAC 1 cut(s) 182
Bst2BI CACGAG 2 cut(s) 211, 3636
Bst6I CTCTTC 5 cut(s) 810, 2391, 3244, 4353, 4455
BstACI GRCGYC 1 cut(s) 2839
BstAFI CTTAAG 1 cut(s) 2905
BstAPI GCANNNNNTGC 2 cut(s) 4400, 4761
BstBAI YACGTR 1 cut(s) 824
BstBI TTCGAA 1 cut(s) 4480
BstC8I GCNNGC 8 cut(s) 487, 858, 2307, 2480, 3544, 3708, 4367, 4429
BstDSI CCRYGG 2 cut(s) 4168, 4381
BstENI CCTNNNNNAGG 1 cut(s) 3717
BstFNI CGCG 4 cut(s) 44, 46, 949, 4290
BstH2I RGCGCY 1 cut(s) 995
BstHHI GCGC 6 cut(s) 46, 994, 1560, 2287, 2658, 2916
BstMAI GTCTC 8 cut(s) 694, 1014, 1467, 1483, 2502, 2551, 2756, 3453
BstNSI RCATGY 3 cut(s) 489, 2730, 4603
BstSFI CTRYAG 2 cut(s) 369, 1543
BstSLI GKGCMC 5 cut(s) 53, 439, 1206, 1285, 4081
BstUI CGCG 4 cut(s) 44, 46, 949, 4290
BstV2I GAAGAC 3 cut(s) 824, 3221, 4653
BstX2I RGATCY 6 cut(s) 1097, 2128, 2536, 2901, 3572, 3904
BstXI CCANNNNNNTGG 1 cut(s) 245
BstYI RGATCY 6 cut(s) 1097, 2128, 2536, 2901, 3572, 3904
BstZ17I GTATAC 1 cut(s) 182
BsuI GTATCC 3 cut(s) 1952, 4216, 4691
BsuRI GGCC 9 cut(s) 98, 219, 1040, 2513, 4365, 4386, 4670, 4804, 4810
BtgI CCRYGG 2 cut(s) 4168, 4381
BtrI CACGTC 1 cut(s) 40
BtsI GCAGTG 2 cut(s) 3415, 3797
BtsIMutI CAGTG 8 cut(s) 2056, 2833, 2868, 3249, 3415, 3489, 3797, 3953
BveI ACCTGC 4 cut(s) 883, 2445, 3194, 3697
Cac8I GCNNGC 8 cut(s) 487, 858, 2307, 2480, 3544, 3708, 4367, 4429
CaiI CAGNNNCTG 1 cut(s) 1109
CfoI GCGC 6 cut(s) 46, 994, 1560, 2287, 2658, 2916
Cfr10I RCCGGY 2 cut(s) 2295, 4365
CseI GACGC 5 cut(s) 1095, 2828, 4033, 4139, 4244
CsiI ACCWGGT 2 cut(s) 3718, 3876
Csp6I GTAC 5 cut(s) 249, 669, 1534, 2045, 3716
CspAI ACCGGT 1 cut(s) 2295
CviQI GTAC 5 cut(s) 249, 669, 1534, 2045, 3716
DraI TTTAAA 1 cut(s) 2640
EaeI YGGCCR 4 cut(s) 217, 2511, 4363, 4668
Eam1104I CTCTTC 5 cut(s) 810, 2391, 3244, 4353, 4455
EarI CTCTTC 5 cut(s) 810, 2391, 3244, 4353, 4455
EciI GGCGGA 1 cut(s) 3637
Eco130I CCWWGG 5 cut(s) 2492, 2672, 3267, 4081, 4381
Eco31I GGTCTC 3 cut(s) 694, 2502, 2756
Eco32I GATATC 2 cut(s) 175, 4300
Eco47I GGWCC 8 cut(s) 1688, 1841, 2564, 2978, 3580, 3740, 3960, 4279
Eco47III AGCGCT 1 cut(s) 993
Eco57I CTGAAG 8 cut(s) 732, 1355, 1366, 2033, 3225, 3381, 4337, 4355
Eco72I CACGTG 1 cut(s) 824
Eco88I CYCGRG 1 cut(s) 1836
EcoNI CCTNNNNNAGG 1 cut(s) 3717
EcoO109I RGGNCCY 5 cut(s) 97, 2978, 3580, 3960, 4808
EcoRI GAATTC 1 cut(s) 4093
EcoRV GATATC 2 cut(s) 175, 4300
EcoT14I CCWWGG 5 cut(s) 2492, 2672, 3267, 4081, 4381
EcoT22I ATGCAT 1 cut(s) 2728
ErhI CCWWGG 5 cut(s) 2492, 2672, 3267, 4081, 4381
FaqI GGGAC 2 cut(s) 192, 430
FauI CCCGC 2 cut(s) 39, 3208
FauNDI CATATG 1 cut(s) 1194
FbaI TGATCA 1 cut(s) 3112
FblI GTMKAC 1 cut(s) 181
FspBI CTAG 7 cut(s) 705, 1050, 2132, 2661, 4271, 4389, 4424
GlaI GCGC 6 cut(s) 45, 993, 1559, 2286, 2657, 2915
GsaI CCCAGC 1 cut(s) 3552
GsuI CTGGAG 4 cut(s) 47, 1388, 1752, 3594
HaeII RGCGCY 1 cut(s) 995
HaeIII GGCC 9 cut(s) 98, 219, 1040, 2513, 4365, 4386, 4670, 4804, 4810
HapII CCGG 5 cut(s) 1755, 2296, 2710, 4366, 4805
HgaI GACGC 5 cut(s) 1095, 2828, 4033, 4139, 4244
HhaI GCGC 6 cut(s) 46, 994, 1560, 2287, 2658, 2916
Hin1I GRCGYC 1 cut(s) 2839
Hin6I GCGC 6 cut(s) 44, 992, 1558, 2285, 2656, 2914
HinP1I GCGC 6 cut(s) 44, 992, 1558, 2285, 2656, 2914
HincII GTYRAC 5 cut(s) 147, 1902, 3493, 4597, 4689
HindII GTYRAC 5 cut(s) 147, 1902, 3493, 4597, 4689
HindIII AAGCTT 5 cut(s) 599, 1124, 2429, 3189, 4257
HpaII CCGG 5 cut(s) 1755, 2296, 2710, 4366, 4805
HphI GGTGA 8 cut(s) 291, 620, 668, 3073, 3221, 3542, 3668, 4125
Hpy99I CGWCG 5 cut(s) 16, 44, 107, 113, 134
HpyCH4IV ACGT 2 cut(s) 39, 823
HpySE526I ACGT 2 cut(s) 39, 823
Hsp92I GRCGYC 1 cut(s) 2839
HspAI GCGC 6 cut(s) 44, 992, 1558, 2285, 2656, 2914
KroI GCCGGC 1 cut(s) 4365
KroNI GCCGGC 1 cut(s) 4367
Ksp22I TGATCA 1 cut(s) 3112
LmnI GCTCC 9 cut(s) 263, 1348, 1369, 1469, 3715, 4172, 4186, 4292, 4587
MabI ACCWGGT 2 cut(s) 3718, 3876
MaeI CTAG 7 cut(s) 705, 1050, 2132, 2661, 4271, 4389, 4424
MaeII ACGT 2 cut(s) 39, 823
MaeIII GTNAC 8 cut(s) 403, 774, 781, 787, 3244, 3441, 4342, 4709
MbiI CCGCTC 1 cut(s) 4181
MfeI CAATTG 2 cut(s) 882, 3468
MflI RGATCY 6 cut(s) 1097, 2128, 2536, 2901, 3572, 3904
MhlI GDGCHC 6 cut(s) 53, 439, 1206, 1285, 4081, 4327
MlsI TGGCCA 2 cut(s) 219, 2513
MluNI TGGCCA 2 cut(s) 219, 2513
MlyI GAGTC 4 cut(s) 1907, 2923, 3230, 4386
MmeI TCCRAC 4 cut(s) 294, 388, 2708, 4647
Mox20I TGGCCA 2 cut(s) 219, 2513
Mph1103I ATGCAT 1 cut(s) 2728
MroNI GCCGGC 1 cut(s) 4365
MroXI GAANNNNTTC 5 cut(s) 1785, 1882, 2385, 3518, 4260
MscI TGGCCA 2 cut(s) 219, 2513
MslI CAYNNNNRTG 6 cut(s) 243, 558, 640, 1007, 2201, 3120
Msp20I TGGCCA 2 cut(s) 219, 2513
MspA1I CMGCKG 2 cut(s) 3395, 3737
MspCI CTTAAG 1 cut(s) 2905
MspI CCGG 5 cut(s) 1755, 2296, 2710, 4366, 4805
MunI CAATTG 2 cut(s) 882, 3468
Mva1269I GAATGC 2 cut(s) 295, 4086
MvnI CGCG 4 cut(s) 44, 46, 949, 4290
NaeI GCCGGC 1 cut(s) 4367
NciI CCSGG 2 cut(s) 1755, 4806
NcoI CCATGG 1 cut(s) 4381
NdeI CATATG 1 cut(s) 1194
NgoMIV GCCGGC 1 cut(s) 4365
NmeAIII GCCGAG 1 cut(s) 1273
NmuCI GTSAC 3 cut(s) 3244, 4342, 4709
NsiI ATGCAT 1 cut(s) 2728
NspI RCATGY 3 cut(s) 489, 2730, 4603
NspV TTCGAA 1 cut(s) 4480
PaeI GCATGC 1 cut(s) 489
PaqCI CACCTGC 1 cut(s) 3194
PciI ACATGT 1 cut(s) 4599
PctI GAATGC 2 cut(s) 295, 4086
PdiI GCCGGC 1 cut(s) 4367
PdmI GAANNNNTTC 5 cut(s) 1785, 1882, 2385, 3518, 4260
PfoI TCCNGGA 2 cut(s) 3808, 4153
PinAI ACCGGT 1 cut(s) 2295
PleI GAGTC 4 cut(s) 1906, 2923, 3230, 4385
PmaCI CACGTG 1 cut(s) 824
PmlI CACGTG 1 cut(s) 824
PpsI GAGTC 4 cut(s) 1906, 2923, 3230, 4385
Ppu21I YACGTR 1 cut(s) 824
PpuMI RGGWCCY 3 cut(s) 2978, 3580, 3960
PscI ACATGT 1 cut(s) 4599
PshBI ATTAAT 1 cut(s) 834
PsiI TTATAA 1 cut(s) 830
Psp5II RGGWCCY 3 cut(s) 2978, 3580, 3960
PspCI CACGTG 1 cut(s) 824
PspFI CCCAGC 1 cut(s) 3548
PspPPI RGGWCCY 3 cut(s) 2978, 3580, 3960
PsrI GAACNNNNNNTAC 2 cut(s) 2037, 2069
PstNI CAGNNNCTG 1 cut(s) 1109
PsuI RGATCY 6 cut(s) 1097, 2128, 2536, 2901, 3572, 3904
PvuII CAGCTG 2 cut(s) 3395, 3737
RsaI GTAC 5 cut(s) 250, 670, 1535, 2046, 3717
RsaNI GTAC 5 cut(s) 249, 669, 1534, 2045, 3716
RseI CAYNNNNRTG 6 cut(s) 243, 558, 640, 1007, 2201, 3120
SchI GAGTC 4 cut(s) 1907, 2923, 3230, 4386
SduI GDGCHC 6 cut(s) 53, 439, 1206, 1285, 4081, 4327
SexAI ACCWGGT 2 cut(s) 3718, 3876
SfcI CTRYAG 2 cut(s) 369, 1543
SfuI TTCGAA 1 cut(s) 4480
SinI GGWCC 8 cut(s) 1688, 1841, 2564, 2978, 3580, 3740, 3960, 4279
SmiMI CAYNNNNRTG 6 cut(s) 243, 558, 640, 1007, 2201, 3120
SmlI CTYRAG 5 cut(s) 2556, 2905, 2931, 3930, 4214
SmoI CTYRAG 5 cut(s) 2556, 2905, 2931, 3930, 4214
SphI GCATGC 1 cut(s) 489
SspI AATATT 2 cut(s) 1152, 2094
SspMI CTAG 7 cut(s) 705, 1050, 2132, 2661, 4271, 4389, 4424
StyI CCWWGG 5 cut(s) 2492, 2672, 3267, 4081, 4381
TaiI ACGT 2 cut(s) 42, 826
TaqI TCGA 9 cut(s) 27, 132, 538, 585, 1669, 1876, 2799, 4251, 4480
TatI WGTACW 1 cut(s) 2044
TauI GCSGC 6 cut(s) 77, 80, 1043, 2839, 4181, 4670
TscAI CASTG 8 cut(s) 2063, 2833, 2875, 3249, 3415, 3489, 3804, 3960
TseFI GTSAC 3 cut(s) 3244, 4342, 4709
Tsp45I GTSAC 3 cut(s) 3244, 4342, 4709
TspGWI ACGGA 1 cut(s) 3878
TspRI CASTG 8 cut(s) 2063, 2833, 2875, 3249, 3415, 3489, 3804, 3960
Vha464I CTTAAG 1 cut(s) 2905
VpaK11BI GGWCC 8 cut(s) 1688, 1841, 2564, 2978, 3580, 3740, 3960, 4279
VspI ATTAAT 1 cut(s) 834
XagI CCTNNNNNAGG 1 cut(s) 3717
XbaI TCTAGA 2 cut(s) 2131, 2660
XceI RCATGY 3 cut(s) 489, 2730, 4603
XcmI CCANNNNNNNNNTGG 2 cut(s) 639, 982
XmiI GTMKAC 1 cut(s) 181
XmnI GAANNNNTTC 5 cut(s) 1785, 1882, 2385, 3518, 4260
XspI CTAG 7 cut(s) 705, 1050, 2132, 2661, 4271, 4389, 4424
Zsp2I ATGCAT 1 cut(s) 2728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.