Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000876.1

Orthogroup ID

OG0012022

Physical Location & Seq

Genomic Coordinates Reverse (-)

106033 .. 106815

Gene Structure 783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

atggccgccacctccctctccatctccccaaaccctagcttcaccgccaccacctctcacaaaccctctccctctctctcaaccccaacccacctcaaattcccaaccaccaccaccaccaccacctcacccatccccgccaaatccctatccacccaacacctctcccaaaccccaaccccacgagccaccttctccacacgcgcctccgccgccgcttccaccactccctccaccaccttccacggcctctgctacgtagtcggcgataacatcgacaccgaccagattatccccgccgagtacctcaccctcgtcccctccaacccctctgagtacgagaagctcggctcctacgccctctgcggcctcccggcgtcctactccacgcgattcgtcgaccccaacgagaccaagtccaagtactccatcgtcatcggcggcgccaacttcggctgcggctcgtcccgcgagcacgcgccggtggctctcggcgcggcgggagtggcggcggtggtggcggagtcgtacgcgcgcatcttcttcaggaactcggtggccaccggcgaggtgtacccgctggaatcggagacgaggatttgcgaggagtgcaggaccggtgatgtggtgagcattgagctgagcgagagccgtctgatcaatcacacgactgggaaagagtatgtgttgaagcccatcggggatgccggtccggttatcagagccggtgggatatttgcttatgctagagaggctgggatgattccaactttgtctggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003861 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006551 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009098 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016053 GO:0016143 GO:0016144 GO:0016829 GO:0016835 GO:0016836 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046394 GO:0048229 GO:0048856 GO:0050896 GO:0071704 GO:0071840 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase_C

Protein Analysis

260

Amino Acids

27.3

Weight (kDa)

6.3

Isoelectric Point (pI)

37.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aconitase_C	PF00694	141 - 189	1.4e-17	Aconitase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43090 AT2G43090
fragaria_vesca	FvH4_5g19250 FvH4_5g19250
malus_domestica	MD04G1062100.v1.1 MD06G1055800.v1.1
prunus_persica	Prupe.5G066300_v2.0.a1
pyrus_communis	pycom04g05570 pycom06g04670
rosa_laevigata	RLG00000003506
rosa_multiflora	Rmu_sc0000876.1_g000034 Rmu_sc0001714.1_g000009
rosa_roxburghii	Rroxscaffold_3G00253550
rosa_rugosa	Rorug07G0078900
rosa_samantha	Rh7AG208600 Rh7BG207400 Rh7CG220600 Rh7DG215400
rosa_wichuraiana	Rw7G018160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	443
AccI	GTMKAC	1 cut(s)	399
AccII	CGCG	7 cut(s)	204, 391, 471, 479, 497, 533, 535
AcoI	YGGCCR	2 cut(s)	3, 558
AcsI	RAATTY	1 cut(s)	98
AcuI	CTGAAG	1 cut(s)	529
AcyI	GRCGYC	2 cut(s)	377, 444
AfaI	GTAC	5 cut(s)	305, 338, 425, 530, 575
AgeI	ACCGGT	1 cut(s)	617
AgsI	TTSAA	1 cut(s)	691
AluBI	AGCT	3 cut(s)	39, 346, 640
AluI	AGCT	3 cut(s)	39, 346, 640
Alw21I	GWGCWC	1 cut(s)	477
Alw26I	GTCTC	2 cut(s)	404, 584
AoxI	GGCC	4 cut(s)	3, 247, 367, 558
ApeKI	GCWGC	1 cut(s)	456
ApoI	RAATTY	1 cut(s)	98
AsiGI	ACCGGT	1 cut(s)	617
AspLEI	GCGC	6 cut(s)	206, 446, 481, 497, 535, 537
AspS9I	GGNCC	2 cut(s)	615, 710
AsuC2I	CCSGG	1 cut(s)	374
AsuHPI	GGTGA	5 cut(s)	34, 120, 301, 632, 640
AvaII	GGWCC	2 cut(s)	615, 710
BalI	TGGCCA	1 cut(s)	560
BanI	GGYRCC	1 cut(s)	443
BauI	CACGAG	1 cut(s)	183
Bbv12I	GWGCWC	1 cut(s)	477
BbvI	GCAGC	1 cut(s)	443
BccI	CCATC	4 cut(s)	29, 140, 437, 704
BceAI	ACGGC	2 cut(s)	262, 636
BclI	TGATCA	1 cut(s)	657
BcnI	CCSGG	1 cut(s)	374
BcoDI	GTCTC	2 cut(s)	404, 584
BfaI	CTAG	2 cut(s)	36, 747
BfoI	RGCGCY	1 cut(s)	447
BisI	GCNGC	9 cut(s)	6, 213, 216, 367, 442, 457, 460, 498, 510
BlpI	GCTNAGC	1 cut(s)	641
BlsI	GCNGC	9 cut(s)	7, 214, 217, 368, 443, 458, 461, 499, 511
BmcAI	AGTACT	1 cut(s)	425
Bme1390I	CCNGG	1 cut(s)	374
Bme18I	GGWCC	2 cut(s)	615, 710
BmgT120I	GGNCC	2 cut(s)	615, 710
BmiI	GGNNCC	2 cut(s)	352, 445
BmrFI	CCNGG	1 cut(s)	374
BmrI	ACTGGG	1 cut(s)	681
BmsI	GCATC	2 cut(s)	546, 694
BmuI	ACTGGG	1 cut(s)	681
Bpu1102I	GCTNAGC	1 cut(s)	641
BpuMI	CCSGG	1 cut(s)	374
BsaAI	YACGTR	1 cut(s)	259
BsaHI	GRCGYC	2 cut(s)	377, 444
BsaI	GGTCTC	1 cut(s)	404
BsaJI	CCNNGG	1 cut(s)	244
BsaWI	WCCGGW	2 cut(s)	617, 712
Bse118I	RCCGGY	5 cut(s)	481, 563, 617, 707, 725
Bse1I	ACTGG	1 cut(s)	676
BseDI	CCNNGG	1 cut(s)	244
BseGI	GGATG	3 cut(s)	132, 709, 765
BseMII	CTCAG	2 cut(s)	324, 632
BseNI	ACTGG	1 cut(s)	676
BsePI	GCGCGC	1 cut(s)	533
BseRI	GAGGAG	1 cut(s)	620
BseXI	GCAGC	1 cut(s)	443
BseYI	CCCAGC	1 cut(s)	755
BsgI	GTGCAG	1 cut(s)	631
Bsh1236I	CGCG	7 cut(s)	204, 391, 471, 479, 497, 533, 535
BshFI	GGCC	4 cut(s)	5, 249, 369, 560
BshNI	GGYRCC	1 cut(s)	443
BshTI	ACCGGT	1 cut(s)	617
BsiHKAI	GWGCWC	1 cut(s)	477
BsiSI	CCGG	7 cut(s)	374, 482, 564, 618, 708, 713, 726
BsiWI	CGTACG	1 cut(s)	528
BslFI	GGGAC	2 cut(s)	302, 451
BsmAI	GTCTC	2 cut(s)	404, 584
BsmBI	CGTCTC	1 cut(s)	584
BsmFI	GGGAC	2 cut(s)	302, 451
BsnI	GGCC	4 cut(s)	5, 249, 369, 560
Bso31I	GGTCTC	1 cut(s)	404
Bsp1286I	GDGCHC	1 cut(s)	477
Bsp143I	GATC	1 cut(s)	657
Bsp1720I	GCTNAGC	1 cut(s)	641
BspANI	GGCC	4 cut(s)	5, 249, 369, 560
BspCNI	CTCAG	2 cut(s)	325, 633
BspFNI	CGCG	7 cut(s)	204, 391, 471, 479, 497, 533, 535
BspLI	GGNNCC	2 cut(s)	352, 445
BspT107I	GGYRCC	1 cut(s)	443
BspTNI	GGTCTC	1 cut(s)	404
BsrFI	RCCGGY	5 cut(s)	481, 563, 617, 707, 725
BsrI	ACTGG	1 cut(s)	676
BssAI	RCCGGY	5 cut(s)	481, 563, 617, 707, 725
BssECI	CCNNGG	1 cut(s)	244
BssHII	GCGCGC	1 cut(s)	533
BssMI	GATC	1 cut(s)	657
BssNI	GRCGYC	2 cut(s)	377, 444
BssSI	CACGAG	1 cut(s)	183
Bst2BI	CACGAG	1 cut(s)	183
BstACI	GRCGYC	2 cut(s)	377, 444
BstBAI	YACGTR	1 cut(s)	259
BstC8I	GCNNGC	3 cut(s)	473, 477, 535
BstDEI	CTNAG	2 cut(s)	333, 641
BstDSI	CCRYGG	1 cut(s)	244
BstF5I	GGATG	3 cut(s)	132, 709, 765
BstFNI	CGCG	7 cut(s)	204, 391, 471, 479, 497, 533, 535
BstH2I	RGCGCY	1 cut(s)	447
BstHHI	GCGC	6 cut(s)	206, 446, 481, 497, 535, 537
BstKTI	GATC	1 cut(s)	660
BstMAI	GTCTC	2 cut(s)	404, 584
BstMBI	GATC	1 cut(s)	657
BstMWI	GCNNNNNNNGC	8 cut(s)	212, 468, 485, 494, 506, 518, 609, 752
BstSCI	CCNGG	1 cut(s)	372
BstSNI	TACGTA	1 cut(s)	259
BstUI	CGCG	7 cut(s)	204, 391, 471, 479, 497, 533, 535
BstV1I	GCAGC	1 cut(s)	443
BsuRI	GGCC	4 cut(s)	5, 249, 369, 560
BtgI	CCRYGG	1 cut(s)	244
BtsCI	GGATG	3 cut(s)	132, 709, 765
Cac8I	GCNNGC	3 cut(s)	473, 477, 535
CfoI	GCGC	6 cut(s)	206, 446, 481, 497, 535, 537
Cfr10I	RCCGGY	5 cut(s)	481, 563, 617, 707, 725
Cfr13I	GGNCC	2 cut(s)	615, 710
CpoI	CGGWCCG	1 cut(s)	710
CseI	GACGC	1 cut(s)	366
Csp6I	GTAC	5 cut(s)	304, 337, 424, 529, 574
CspAI	ACCGGT	1 cut(s)	617
CspI	CGGWCCG	1 cut(s)	710
CviQI	GTAC	5 cut(s)	304, 337, 424, 529, 574
DdeI	CTNAG	2 cut(s)	333, 641
DinI	GGCGCC	1 cut(s)	445
DpnI	GATC	1 cut(s)	659
DpnII	GATC	1 cut(s)	657
EaeI	YGGCCR	2 cut(s)	3, 558
EciI	GGCGGA	2 cut(s)	199, 536
Eco105I	TACGTA	1 cut(s)	259
Eco31I	GGTCTC	1 cut(s)	404
Eco47I	GGWCC	2 cut(s)	615, 710
Eco57I	CTGAAG	1 cut(s)	529
EgeI	GGCGCC	1 cut(s)	445
EheI	GGCGCC	1 cut(s)	445
Esp3I	CGTCTC	1 cut(s)	584
FaiI	YATR	2 cut(s)	684, 744
FaqI	GGGAC	2 cut(s)	302, 451
FauI	CCCGC	5 cut(s)	145, 304, 476, 493, 585
FbaI	TGATCA	1 cut(s)	657
FblI	GTMKAC	1 cut(s)	399
Fnu4HI	GCNGC	9 cut(s)	6, 213, 216, 367, 442, 457, 460, 498, 510
FokI	GGATG	3 cut(s)	119, 716, 772
Fsp4HI	GCNGC	9 cut(s)	6, 213, 216, 367, 442, 457, 460, 498, 510
FspBI	CTAG	2 cut(s)	36, 747
GlaI	GCGC	6 cut(s)	205, 445, 480, 496, 534, 536
GluI	GCNGC	9 cut(s)	6, 213, 216, 367, 442, 457, 460, 498, 510
GsaI	CCCAGC	1 cut(s)	759
HaeII	RGCGCY	1 cut(s)	447
HaeIII	GGCC	4 cut(s)	5, 249, 369, 560
HapII	CCGG	7 cut(s)	374, 482, 564, 618, 708, 713, 726
HgaI	GACGC	1 cut(s)	366
HhaI	GCGC	6 cut(s)	206, 446, 481, 497, 535, 537
Hin1I	GRCGYC	2 cut(s)	377, 444
Hin6I	GCGC	6 cut(s)	204, 444, 479, 495, 533, 535
HinP1I	GCGC	6 cut(s)	204, 444, 479, 495, 533, 535
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HinfI	GANTC	4 cut(s)	393, 524, 584, 763
HpaII	CCGG	7 cut(s)	374, 482, 564, 618, 708, 713, 726
HphI	GGTGA	5 cut(s)	34, 120, 301, 632, 640
Hpy166II	GTNNAC	2 cut(s)	400, 574
Hpy188I	TCNGA	4 cut(s)	334, 589, 657, 722
Hpy188III	TCNNGA	1 cut(s)	547
Hpy8I	GTNNAC	2 cut(s)	400, 574
Hpy99I	CGWCG	1 cut(s)	401
HpyAV	CCTTC	2 cut(s)	202, 250
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	1 cut(s)	612
HpyF10VI	GCNNNNNNNGC	8 cut(s)	212, 468, 485, 494, 506, 518, 609, 752
HpyF3I	CTNAG	2 cut(s)	333, 641
HpySE526I	ACGT	1 cut(s)	258
Hsp92I	GRCGYC	2 cut(s)	377, 444
HspAI	GCGC	6 cut(s)	204, 444, 479, 495, 533, 535
KasI	GGCGCC	1 cut(s)	443
Ksp22I	TGATCA	1 cut(s)	657
Kzo9I	GATC	1 cut(s)	657
LmnI	GCTCC	1 cut(s)	356
Lsp1109I	GCAGC	1 cut(s)	443
LweI	GCATC	2 cut(s)	546, 694
MaeI	CTAG	2 cut(s)	36, 747
MaeII	ACGT	1 cut(s)	258
MalI	GATC	1 cut(s)	659
MboI	GATC	1 cut(s)	657
MboII	GAAGA	2 cut(s)	532, 535
MhlI	GDGCHC	1 cut(s)	477
MlsI	TGGCCA	1 cut(s)	560
MluCI	AATT	1 cut(s)	98
MluNI	TGGCCA	1 cut(s)	560
Mly113I	GGCGCC	1 cut(s)	444
MlyI	GAGTC	1 cut(s)	533
MmeI	TCCRAC	1 cut(s)	348
Mox20I	TGGCCA	1 cut(s)	560
MscI	TGGCCA	1 cut(s)	560
Msp20I	TGGCCA	1 cut(s)	560
MspA1I	CMGCKG	1 cut(s)	580
MspI	CCGG	7 cut(s)	374, 482, 564, 618, 708, 713, 726
MspR9I	CCNGG	1 cut(s)	374
MvnI	CGCG	7 cut(s)	204, 391, 471, 479, 497, 533, 535
MwoI	GCNNNNNNNGC	8 cut(s)	212, 468, 485, 494, 506, 518, 609, 752
NarI	GGCGCC	1 cut(s)	444
NciI	CCSGG	1 cut(s)	374
NdeII	GATC	1 cut(s)	657
NlaIV	GGNNCC	2 cut(s)	352, 445
NmeAIII	GCCGAG	3 cut(s)	325, 327, 471
PauI	GCGCGC	1 cut(s)	533
PcsI	WCGNNNNNNNCGW	2 cut(s)	264, 405
PfeI	GAWTC	3 cut(s)	393, 584, 763
Pfl23II	CGTACG	1 cut(s)	528
PflFI	GACNNNGTC	1 cut(s)	415
PinAI	ACCGGT	1 cut(s)	617
PkrI	GCNGC	9 cut(s)	7, 214, 217, 368, 443, 458, 461, 499, 511
PleI	GAGTC	1 cut(s)	532
PluTI	GGCGCC	1 cut(s)	447
PpsI	GAGTC	1 cut(s)	532
Ppu21I	YACGTR	1 cut(s)	259
PspFI	CCCAGC	1 cut(s)	755
PspLI	CGTACG	1 cut(s)	528
PspN4I	GGNNCC	2 cut(s)	352, 445
PspPI	GGNCC	2 cut(s)	615, 710
PsyI	GACNNNGTC	1 cut(s)	415
PteI	GCGCGC	1 cut(s)	533
RsaI	GTAC	5 cut(s)	305, 338, 425, 530, 575
RsaNI	GTAC	5 cut(s)	304, 337, 424, 529, 574
Rsr2I	CGGWCCG	1 cut(s)	710
RsrII	CGGWCCG	1 cut(s)	710
SalI	GTCGAC	1 cut(s)	398
SatI	GCNGC	9 cut(s)	6, 213, 216, 367, 442, 457, 460, 498, 510
Sau3AI	GATC	1 cut(s)	657
Sau96I	GGNCC	2 cut(s)	615, 710
ScaI	AGTACT	1 cut(s)	425
SchI	GAGTC	1 cut(s)	533
ScrFI	CCNGG	1 cut(s)	374
SduI	GDGCHC	1 cut(s)	477
SfaNI	GCATC	2 cut(s)	546, 694
SfoI	GGCGCC	1 cut(s)	445
SgrAI	CRCCGGYG	2 cut(s)	481, 563
SinI	GGWCC	2 cut(s)	615, 710
SnaBI	TACGTA	1 cut(s)	259
Sse9I	AATT	1 cut(s)	98
SspDI	GGCGCC	1 cut(s)	443
SspMI	CTAG	2 cut(s)	36, 747
StyD4I	CCNGG	1 cut(s)	372
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	2 cut(s)	276, 399
TasI	AATT	1 cut(s)	98
TatI	WGTACW	1 cut(s)	423
TauI	GCSGC	8 cut(s)	8, 215, 218, 369, 444, 462, 500, 512
TfiI	GAWTC	3 cut(s)	393, 584, 763
TseI	GCWGC	1 cut(s)	456
Tth111I	GACNNNGTC	1 cut(s)	415
VpaK11BI	GGWCC	2 cut(s)	615, 710
XapI	RAATTY	1 cut(s)	98
XmiI	GTMKAC	1 cut(s)	399
XspI	CTAG	2 cut(s)	36, 747
ZrmI	AGTACT	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.