Rmu_sc0000923.1_g000001

RNA polymerase II C-terminal domain phosphatase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000923.1
OG0002842
Physical Location & Seq
Forward (+)
1 .. 5597
5597 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1299 bp
cctccttctcctgatgtgagtaattacttgatatcagaggatgctggttttgtaccaaatggaattgctccccttggtgaaggaatgcatggtggtgaagttgaacggagattgaaccaacctgatgataagggtgttatggactcaatggcttattctaatcatgctgagttaagacctgacaactcccagaaacctgtagcaactgtcctcaatgtccctggttcaacatctttgagaccggtcatgcctactcagaaacctagtttgcttggacctcttgttagacgagatagcttttctgatcgtgataataacatgaagagaggacttcttggtacaaatccttgcctagatataaggagtcaaagctctggtgaacccccaaattcatctagagtacctgcacaaacttcaacatccacagtacatgcacaaggaggatggttggtggatgatgacatgaaaagaggacatttaagttttcgacctcctggttctggtcaagagtctgatgtcttaaaacttgagaagctgatccaccagaatccatttagtcttaataaacagtctgctcccactggtttaccctcacagacatctgaggcaaggagggaagaggttagctctggacatgatttcccaaagcaaaatcttccttttccaagtgtgttatcagaggctggtgtgtctcagaatcaggcatcttcttttaaaaaagaatctggaaaagtgaacgcgctgccatcccctttatctattggtgtgctgcaggaaatcggacggagatgcggctcaaaggttgaatttaaggctgttataagcaccagtaacgatttgcagttttcttttgaggtgctcttcactggggagaagataggttttggaacaggaaggacaagaaaggatgctcaacaacaggctgctgagaatgcacttcacagcttggctgaaaaatatgtctcatatattgcaccgcaatctggagcagtggacaaagattttgataaactctctcttggaaatgaaaacggatttgttttggacatagttggtccaggatcagctgagtggctaacggaagatggattgccaaaagaaagtacttctgaggcttctgaaggtgagcctgggagctcttctactgtggcgagtcagcaagttcaaaagcgtgccaattccccaaggttgctacagtctgtttcgaataaacgatccaaggaagaactagcgggcggtccgcgaaacctatcatattctcggctgaggaagggccctaaagagaaacctcaggactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NIF dsrm

Protein Analysis

432

Amino Acids

46.47

Weight (kDa)

6.48

Isoelectric Point (pI)

57.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
dsrm PF00035 254 - 316 9.7e-09 Double-stranded RNA binding motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 821
Acc36I ACCTGC 1 cut(s) 412
AccII CGCG 2 cut(s) 740, 1243
AciI CCGC 5 cut(s) 792, 977, 1232, 1236, 1241
AclWI GGATC 3 cut(s) 532, 1069, 1209
AcsI RAATTY 2 cut(s) 388, 806
AcuI CTGAAG 1 cut(s) 1140
AfaI GTAC 5 cut(s) 54, 340, 402, 429, 1105
AfiI CCNNNNNNNGG 2 cut(s) 500, 983
AgeI ACCGGT 1 cut(s) 241
AgsI TTSAA 6 cut(s) 104, 115, 228, 417, 806, 1166
AjnI CCWGG 4 cut(s) 220, 493, 1057, 1129
AluBI AGCT 7 cut(s) 297, 372, 535, 627, 945, 1067, 1137
AluI AGCT 7 cut(s) 297, 372, 535, 627, 945, 1067, 1137
Alw21I GWGCWC 2 cut(s) 861, 1139
Alw26I GTCTC 3 cut(s) 232, 696, 967
AlwI GGATC 3 cut(s) 532, 1069, 1209
AlwNI CAGNNNCTG 1 cut(s) 683
AoxI GGCC 1 cut(s) 1273
ApaI GGGCCC 1 cut(s) 1277
ApeKI GCWGC 3 cut(s) 742, 769, 923
ApoI RAATTY 2 cut(s) 388, 806
ArsI GACNNNNNNTTYG 2 cut(s) 986, 1018
AsiGI ACCGGT 1 cut(s) 241
AspLEI GCGC 1 cut(s) 742
AspS9I GGNCC 5 cut(s) 275, 1055, 1238, 1273, 1274
AsuHPI GGTGA 4 cut(s) 89, 107, 389, 1136
AsuII TTCGAA 1 cut(s) 1205
AvaII GGWCC 3 cut(s) 275, 1055, 1238
AxyI CCTNAGG 1 cut(s) 1290
BaeGI GKGCMC 1 cut(s) 1277
BanII GRGCYC 2 cut(s) 1139, 1277
Bbv12I GWGCWC 2 cut(s) 861, 1139
BbvCI CCTCAGC 1 cut(s) 1265
BbvI GCAGC 3 cut(s) 729, 756, 910
BccI CCATC 3 cut(s) 438, 754, 1079
BciT130I CCWGG 4 cut(s) 222, 495, 1059, 1131
BcoDI GTCTC 3 cut(s) 232, 696, 967
BfaI CTAG 4 cut(s) 264, 353, 396, 1229
BfmI CTRYAG 3 cut(s) 198, 770, 1193
BfuAI ACCTGC 1 cut(s) 412
BisI GCNGC 4 cut(s) 743, 770, 793, 924
BlsI GCNGC 4 cut(s) 744, 771, 794, 925
BmcAI AGTACT 1 cut(s) 1105
Bme1390I CCNGG 4 cut(s) 222, 495, 1059, 1131
Bme18I GGWCC 3 cut(s) 275, 1055, 1238
BmgT120I GGNCC 5 cut(s) 275, 1055, 1238, 1273, 1274
BmiI GGNNCC 1 cut(s) 1275
BmrFI CCNGG 4 cut(s) 222, 495, 1059, 1131
BmrI ACTGGG 1 cut(s) 876
BmsI GCATC 4 cut(s) 31, 713, 779, 898
BmuI ACTGGG 1 cut(s) 876
BplI GAGNNNNNCTC 2 cut(s) 611, 643
BpmI CTGGAG 1 cut(s) 1005
Bpu10I CCTNAGC 1 cut(s) 1265
Bpu14I TTCGAA 1 cut(s) 1205
BpuEI CTTGAG 1 cut(s) 548
BsaI GGTCTC 1 cut(s) 232
BsaJI CCNNGG 5 cut(s) 73, 220, 1130, 1184, 1218
BsaWI WCCGGW 1 cut(s) 241
Bsc4I CCNNNNNNNGG 2 cut(s) 500, 983
Bse118I RCCGGY 1 cut(s) 241
Bse1I ACTGG 3 cut(s) 586, 828, 871
Bse21I CCTNAGG 1 cut(s) 1290
BseBI CCWGG 4 cut(s) 222, 495, 1059, 1131
BseDI CCNNGG 5 cut(s) 73, 220, 1130, 1184, 1218
BseGI GGATG 6 cut(s) 46, 419, 449, 460, 746, 913
BseLI CCNNNNNNNGG 2 cut(s) 500, 983
BseMII CTCAG 8 cut(s) 159, 269, 594, 707, 918, 1059, 1101, 1256
BseNI ACTGG 3 cut(s) 586, 828, 871
BseSI GKGCMC 1 cut(s) 1277
BseXI GCAGC 3 cut(s) 729, 756, 910
BsgI GTGCAG 1 cut(s) 390
Bsh1236I CGCG 2 cut(s) 740, 1243
BshFI GGCC 1 cut(s) 1275
BshTI ACCGGT 1 cut(s) 241
BsiHKAI GWGCWC 2 cut(s) 861, 1139
BsiSI CCGG 1 cut(s) 242
BslFI GGGAC 1 cut(s) 203
BslI CCNNNNNNNGG 2 cut(s) 500, 983
BsmAI GTCTC 3 cut(s) 232, 696, 967
BsmFI GGGAC 1 cut(s) 203
BsmI GAATGC 2 cut(s) 90, 937
BsnI GGCC 1 cut(s) 1275
Bso31I GGTCTC 1 cut(s) 232
Bsp119I TTCGAA 1 cut(s) 1205
Bsp120I GGGCCC 1 cut(s) 1273
Bsp1286I GDGCHC 3 cut(s) 861, 1139, 1277
Bsp143I GATC 4 cut(s) 304, 537, 1061, 1214
BspACI CCGC 5 cut(s) 792, 977, 1232, 1236, 1241
BspANI GGCC 1 cut(s) 1275
BspCNI CTCAG 8 cut(s) 160, 268, 595, 706, 919, 1060, 1102, 1257
BspFNI CGCG 2 cut(s) 740, 1243
BspLI GGNNCC 1 cut(s) 1275
BspMAI CTGCAG 1 cut(s) 774
BspMI ACCTGC 1 cut(s) 412
BspPI GGATC 3 cut(s) 532, 1069, 1209
BspQI GCTCTTC 2 cut(s) 866, 1144
BspT104I TTCGAA 1 cut(s) 1205
BspTNI GGTCTC 1 cut(s) 232
BsrFI RCCGGY 1 cut(s) 241
BsrI ACTGG 3 cut(s) 586, 828, 871
BssAI RCCGGY 1 cut(s) 241
BssECI CCNNGG 5 cut(s) 73, 220, 1130, 1184, 1218
BssMI GATC 4 cut(s) 304, 537, 1061, 1214
BssT1I CCWWGG 3 cut(s) 73, 1184, 1218
Bst2UI CCWGG 4 cut(s) 222, 495, 1059, 1131
Bst4CI ACNGT 5 cut(s) 208, 427, 570, 1147, 1197
Bst6I CTCTTC 4 cut(s) 317, 612, 866, 1144
BstBI TTCGAA 1 cut(s) 1205
BstC8I GCNNGC 2 cut(s) 1173, 1234
BstDEI CTNAG 9 cut(s) 168, 255, 603, 693, 927, 1068, 1110, 1265, 1290
BstF5I GGATG 6 cut(s) 46, 419, 449, 460, 746, 913
BstFNI CGCG 2 cut(s) 740, 1243
BstHHI GCGC 1 cut(s) 742
BstKTI GATC 4 cut(s) 307, 540, 1064, 1217
BstMAI GTCTC 3 cut(s) 232, 696, 967
BstMBI GATC 4 cut(s) 304, 537, 1061, 1214
BstMWI GCNNNNNNNGC 1 cut(s) 932
BstNI CCWGG 4 cut(s) 222, 495, 1059, 1131
BstNSI RCATGY 1 cut(s) 434
BstSCI CCNGG 4 cut(s) 220, 493, 1057, 1129
BstSFI CTRYAG 3 cut(s) 198, 770, 1193
BstSLI GKGCMC 1 cut(s) 1277
BstUI CGCG 2 cut(s) 740, 1243
BstV1I GCAGC 3 cut(s) 729, 756, 910
Bsu36I CCTNAGG 1 cut(s) 1290
BsuRI GGCC 1 cut(s) 1275
BtsCI GGATG 6 cut(s) 46, 419, 449, 460, 746, 913
BtsI GCAGTG 1 cut(s) 996
BtsIMutI CAGTG 3 cut(s) 579, 864, 996
BveI ACCTGC 1 cut(s) 412
Cac8I GCNNGC 2 cut(s) 1173, 1234
CaiI CAGNNNCTG 1 cut(s) 683
CfoI GCGC 1 cut(s) 742
Cfr10I RCCGGY 1 cut(s) 241
Cfr13I GGNCC 5 cut(s) 275, 1055, 1238, 1273, 1274
CpoI CGGWCCG 1 cut(s) 1238
Csp6I GTAC 5 cut(s) 53, 339, 401, 428, 1104
CspAI ACCGGT 1 cut(s) 241
CspI CGGWCCG 1 cut(s) 1238
CviAII CATG 7 cut(s) 89, 164, 247, 319, 431, 463, 635
CviQI GTAC 5 cut(s) 53, 339, 401, 428, 1104
DdeI CTNAG 9 cut(s) 168, 255, 603, 693, 927, 1068, 1110, 1265, 1290
DpnI GATC 4 cut(s) 306, 539, 1063, 1216
DpnII GATC 4 cut(s) 304, 537, 1061, 1214
DraI TTTAAA 1 cut(s) 715
Eam1104I CTCTTC 4 cut(s) 317, 612, 866, 1144
EarI CTCTTC 4 cut(s) 317, 612, 866, 1144
Ecl136II GAGCTC 1 cut(s) 1137
Eco130I CCWWGG 3 cut(s) 73, 1184, 1218
Eco24I GRGCYC 2 cut(s) 1139, 1277
Eco31I GGTCTC 1 cut(s) 232
Eco32I GATATC 1 cut(s) 33
Eco47I GGWCC 3 cut(s) 275, 1055, 1238
Eco53kI GAGCTC 1 cut(s) 1137
Eco57I CTGAAG 1 cut(s) 1140
Eco81I CCTNAGG 1 cut(s) 1290
EcoICRI GAGCTC 1 cut(s) 1137
EcoO109I RGGNCCY 2 cut(s) 1273, 1274
EcoRII CCWGG 4 cut(s) 220, 493, 1057, 1129
EcoRV GATATC 1 cut(s) 33
EcoT14I CCWWGG 3 cut(s) 73, 1184, 1218
EcoT22I ATGCAT 1 cut(s) 90
EcoT38I GRGCYC 2 cut(s) 1139, 1277
ErhI CCWWGG 3 cut(s) 73, 1184, 1218
FaeI CATG 7 cut(s) 92, 167, 250, 322, 434, 466, 638
FaqI GGGAC 1 cut(s) 203
FatI CATG 7 cut(s) 88, 163, 246, 318, 430, 462, 634
FauI CCCGC 1 cut(s) 1225
Fnu4HI GCNGC 4 cut(s) 743, 770, 793, 924
FokI GGATG 6 cut(s) 53, 406, 456, 467, 733, 920
FriOI GRGCYC 2 cut(s) 1139, 1277
Fsp4HI GCNGC 4 cut(s) 743, 770, 793, 924
FspBI CTAG 4 cut(s) 264, 353, 396, 1229
GlaI GCGC 1 cut(s) 741
GluI GCNGC 4 cut(s) 743, 770, 793, 924
GsuI CTGGAG 1 cut(s) 1005
HaeIII GGCC 1 cut(s) 1275
HapII CCGG 1 cut(s) 242
HhaI GCGC 1 cut(s) 742
Hin1II CATG 7 cut(s) 92, 167, 250, 322, 434, 466, 638
Hin6I GCGC 1 cut(s) 740
HinP1I GCGC 1 cut(s) 740
HinfI GANTC 7 cut(s) 143, 364, 509, 547, 697, 722, 1153
HpaII CCGG 1 cut(s) 242
HphI GGTGA 4 cut(s) 89, 107, 389, 1136
Hpy166II GTNNAC 4 cut(s) 380, 587, 736, 994
Hpy188III TCNNGA 8 cut(s) 11, 308, 396, 506, 630, 726, 984, 1292
Hpy8I GTNNAC 4 cut(s) 380, 587, 736, 994
HpyAV CCTTC 5 cut(s) 15, 74, 888, 1115, 1264
HpyCH4III ACNGT 5 cut(s) 208, 427, 570, 1147, 1197
HpyCH4V TGCA 7 cut(s) 88, 407, 434, 772, 841, 935, 974
HpyF10VI GCNNNNNNNGC 1 cut(s) 932
HpyF3I CTNAG 9 cut(s) 168, 255, 603, 693, 927, 1068, 1110, 1265, 1290
Hsp92II CATG 7 cut(s) 92, 167, 250, 322, 434, 466, 638
HspAI GCGC 1 cut(s) 740
Kzo9I GATC 4 cut(s) 304, 537, 1061, 1214
LguI GCTCTTC 2 cut(s) 866, 1144
LmnI GCTCC 4 cut(s) 73, 580, 986, 1134
Lsp1109I GCAGC 3 cut(s) 729, 756, 910
LweI GCATC 4 cut(s) 31, 713, 779, 898
MaeI CTAG 4 cut(s) 264, 353, 396, 1229
MaeIII GTNAC 1 cut(s) 830
MalI GATC 4 cut(s) 306, 539, 1063, 1216
MboI GATC 4 cut(s) 304, 537, 1061, 1214
MboII GAAGA 9 cut(s) 334, 629, 647, 699, 853, 886, 1094, 1131, 1235
MhlI GDGCHC 3 cut(s) 861, 1139, 1277
MluCI AATT 5 cut(s) 22, 63, 388, 806, 1177
MlyI GAGTC 4 cut(s) 137, 373, 518, 1162
Mph1103I ATGCAT 1 cut(s) 90
MseI TTAA 6 cut(s) 173, 479, 521, 561, 714, 810
MslI CAYNNNNRTG 1 cut(s) 93
MspA1I CMGCKG 1 cut(s) 1067
MspI CCGG 1 cut(s) 242
MspR9I CCNGG 4 cut(s) 222, 495, 1059, 1131
Mva1269I GAATGC 2 cut(s) 90, 937
MvaI CCWGG 4 cut(s) 222, 495, 1059, 1131
MvnI CGCG 2 cut(s) 740, 1243
MwoI GCNNNNNNNGC 1 cut(s) 932
NdeII GATC 4 cut(s) 304, 537, 1061, 1214
NlaIII CATG 7 cut(s) 92, 167, 250, 322, 434, 466, 638
NlaIV GGNNCC 1 cut(s) 1275
NmeAIII GCCGAG 1 cut(s) 1240
NsiI ATGCAT 1 cut(s) 90
NspI RCATGY 1 cut(s) 434
NspV TTCGAA 1 cut(s) 1205
PciSI GCTCTTC 2 cut(s) 866, 1144
PctI GAATGC 2 cut(s) 90, 937
PfeI GAWTC 3 cut(s) 547, 697, 722
PfoI TCCNGGA 1 cut(s) 1057
PinAI ACCGGT 1 cut(s) 241
PkrI GCNGC 4 cut(s) 744, 771, 794, 925
PleI GAGTC 4 cut(s) 137, 372, 517, 1161
PpsI GAGTC 4 cut(s) 137, 372, 517, 1161
PsiI TTATAA 1 cut(s) 821
Psp124BI GAGCTC 1 cut(s) 1139
Psp6I CCWGG 4 cut(s) 220, 493, 1057, 1129
PspGI CCWGG 4 cut(s) 220, 493, 1057, 1129
PspN4I GGNNCC 1 cut(s) 1275
PspOMI GGGCCC 1 cut(s) 1273
PspPI GGNCC 5 cut(s) 275, 1055, 1238, 1273, 1274
PstI CTGCAG 1 cut(s) 774
PstNI CAGNNNCTG 1 cut(s) 683
PvuII CAGCTG 1 cut(s) 1067
RsaI GTAC 5 cut(s) 54, 340, 402, 429, 1105
RsaNI GTAC 5 cut(s) 53, 339, 401, 428, 1104
RseI CAYNNNNRTG 1 cut(s) 93
Rsr2I CGGWCCG 1 cut(s) 1238
RsrII CGGWCCG 1 cut(s) 1238
SacI GAGCTC 1 cut(s) 1139
SapI GCTCTTC 2 cut(s) 866, 1144
SaqAI TTAA 6 cut(s) 173, 479, 521, 561, 714, 810
SatI GCNGC 4 cut(s) 743, 770, 793, 924
Sau3AI GATC 4 cut(s) 304, 537, 1061, 1214
Sau96I GGNCC 5 cut(s) 275, 1055, 1238, 1273, 1274
ScaI AGTACT 1 cut(s) 1105
SchI GAGTC 4 cut(s) 137, 373, 518, 1162
ScrFI CCNGG 4 cut(s) 222, 495, 1059, 1131
SduI GDGCHC 3 cut(s) 861, 1139, 1277
SfaNI GCATC 4 cut(s) 31, 713, 779, 898
SfcI CTRYAG 3 cut(s) 198, 770, 1193
SfuI TTCGAA 1 cut(s) 1205
SinI GGWCC 3 cut(s) 275, 1055, 1238
SmiMI CAYNNNNRTG 1 cut(s) 93
SmlI CTYRAG 1 cut(s) 527
SmoI CTYRAG 1 cut(s) 527
Sse9I AATT 5 cut(s) 22, 63, 388, 806, 1177
SsiI CCGC 5 cut(s) 792, 977, 1232, 1236, 1241
SspMI CTAG 4 cut(s) 264, 353, 396, 1229
SstI GAGCTC 1 cut(s) 1139
StyD4I CCNGG 4 cut(s) 220, 493, 1057, 1129
StyI CCWWGG 3 cut(s) 73, 1184, 1218
TaaI ACNGT 5 cut(s) 208, 427, 570, 1147, 1197
TaqI TCGA 2 cut(s) 487, 1205
TasI AATT 5 cut(s) 22, 63, 388, 806, 1177
TatI WGTACW 2 cut(s) 427, 1103
TauI GCSGC 1 cut(s) 795
TfiI GAWTC 3 cut(s) 547, 697, 722
Tru1I TTAA 6 cut(s) 173, 479, 521, 561, 714, 810
Tru9I TTAA 6 cut(s) 173, 479, 521, 561, 714, 810
TscAI CASTG 3 cut(s) 586, 871, 996
TseI GCWGC 3 cut(s) 742, 769, 923
TspDTI ATGAA 4 cut(s) 335, 381, 479, 1041
TspGWI ACGGA 4 cut(s) 121, 799, 1047, 1094
TspRI CASTG 3 cut(s) 586, 871, 996
VpaK11BI GGWCC 3 cut(s) 275, 1055, 1238
XapI RAATTY 2 cut(s) 388, 806
XbaI TCTAGA 1 cut(s) 395
XceI RCATGY 1 cut(s) 434
XspI CTAG 4 cut(s) 264, 353, 396, 1229
ZrmI AGTACT 1 cut(s) 1105
Zsp2I ATGCAT 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.