Rmu_sc0000923.1_g000024

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000923.1
OG0016364
Physical Location & Seq
Reverse (-)
97302 .. 100230
2929 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1656 bp
atgagaaagcaaagcattcacgaaatagtttgttacacagatgaccattcttttcctcttccactggtggcggttcagaattggtcaaatgtatctaataaattttgtataggtacagatcagaagtggagccagaatacaactaatttggagtcgcttgttccagggtgttcctattctcatatatccatcttcatagttggctacaaatcaaagccgatatgcagtgattggggaaaaagctcaaattggtggtccgacgacaaaggaaaacctgccaagatgactgaattccagcaggaaatccagcaagtagaagcaattgacaagaagaaagagtggcatcgggagattactgaaaagcttcaccgcaaggtggaaagtggttctggatgtctgagcatccacacggttccaacgagacttcgacgagtgaaggatgaggcctacaactgtcgcattgtctcaattggtcctttgcatctaggcaaccatgaccttgcagccatgagagagcgtaaatgggcttacatgcatcacttatttcagcgaattgaagatcgtcagcagtttctagagtgttggacagagtgcacgagtgctgtttatgatttagactcacaaattcgtggatgctacgctaaaaggatgagccacaaagacaagggacacaaggagcttgcagaagttgtattaattgacggatgcttcattctggaacttttcctcaggtatgaggaacacttgaatatgacactggattatcaatctgatccaatattcaatagtgcctggatgatcgcggctcttcagcatgatctagcactactcgaaaaccagatcccctttatgattctcgaacgtttatatgaggccattaagcctcatctaaagaatagtcgacctcgaccagactctgtcgctagccttgctcttactttttttcaacccatgaactataaggcttttttagaagattgggacactcagtacaaccatttgcttgatgtcttgcacaaattttacctcccaagtaattgtgacatctcagtagaaattgaaatgattaccgaaatgaaacatcattccagacctgaaccagtattcggcagtactaaaaaatggggattcaatttttgtgcttcagagctttcggcggctggaatcgagtttcagaagcagcagaggacggaccatttgttgaacataactttcagcaggggagtaattaaaattccaccgattttcattgacgattcactcttgaggaacttgattgctttcgagcaatgcagtcttggcagcctgcatcacatgacatcatacgcaattctcttgaagagtctcattcgttccccgcgagatatcagactacttaagcaaagaggtatcataagttccgattggattagagaagaagagtacttgtctcaactcaaaagtatacttgatgaagttgttgtgaaggagttctactttggtgatttgtgtgacaaagtgaatgcttaccacggcaagttctggtttcgcagaggtataaagtacatttatcgcacttatttctccacagcatggagtatgatatcatttgttgcagccattatacttttcattctcacagctttacaaacattctatactgtccgccctcgctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

551

Amino Acids

64.44

Weight (kDa)

7.88

Isoelectric Point (pI)

45.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 135 - 539 2e-96 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 283
AccB7I CCANNNNNTGG 1 cut(s) 1572
AccI GTMKAC 2 cut(s) 901, 1444
AccII CGCG 2 cut(s) 803, 1360
AciI CCGC 6 cut(s) 71, 370, 803, 1157, 1358, 1645
AclI AACGTT 1 cut(s) 862
AclWI GGATC 2 cut(s) 767, 835
AcsI RAATTY 5 cut(s) 101, 290, 624, 1019, 1233
AcuI CTGAAG 2 cut(s) 794, 1128
AfaI GTAC 5 cut(s) 115, 992, 1114, 1424, 1544
AfiI CCNNNNNNNGG 3 cut(s) 376, 1106, 1572
AflII CTTAAG 1 cut(s) 1376
AgsI TTSAA 8 cut(s) 557, 748, 784, 947, 1061, 1132, 1204, 1339
AjnI CCWGG 2 cut(s) 163, 791
AluBI AGCT 5 cut(s) 243, 364, 679, 1150, 1622
AluI AGCT 5 cut(s) 243, 364, 679, 1150, 1622
Alw21I GWGCWC 1 cut(s) 596
Alw26I GTCTC 4 cut(s) 415, 469, 1349, 1434
Alw44I GTGCAC 1 cut(s) 592
AlwI GGATC 2 cut(s) 767, 835
AlwNI CAGNNNCTG 1 cut(s) 917
AoxI GGCC 2 cut(s) 444, 873
ApaLI GTGCAC 1 cut(s) 592
ApeKI GCWGC 4 cut(s) 503, 1180, 1302, 1595
ApoI RAATTY 5 cut(s) 101, 290, 624, 1019, 1233
ArsI GACNNNNNNTTYG 4 cut(s) 239, 271, 1180, 1212
AseI ATTAAT 1 cut(s) 695
Asp700I GAANNNNTTC 2 cut(s) 363, 1469
AspS9I GGNCC 3 cut(s) 255, 473, 1192
AsuHPI GGTGA 2 cut(s) 359, 1493
AsuNHI GCTAGC 1 cut(s) 923
AvaII GGWCC 3 cut(s) 255, 473, 1192
AxyI CCTNAGG 1 cut(s) 728
BaeGI GKGCMC 1 cut(s) 596
BarI GAAGNNNNNNTAC 2 cut(s) 1457, 1489
BauI CACGAG 1 cut(s) 595
Bbv12I GWGCWC 1 cut(s) 596
BbvI GCAGC 4 cut(s) 515, 1192, 1314, 1607
BccI CCATC 1 cut(s) 197
BceAI ACGGC 1 cut(s) 1528
BciT130I CCWGG 2 cut(s) 165, 793
BcoDI GTCTC 4 cut(s) 415, 469, 1349, 1434
BfaI CTAG 4 cut(s) 485, 575, 821, 924
BfrI CTTAAG 1 cut(s) 1376
BfuAI ACCTGC 1 cut(s) 283
BisI GCNGC 6 cut(s) 504, 804, 1158, 1181, 1303, 1596
BlsI GCNGC 6 cut(s) 505, 805, 1159, 1182, 1304, 1597
BmcAI AGTACT 2 cut(s) 1114, 1424
Bme1390I CCNGG 2 cut(s) 165, 793
Bme18I GGWCC 3 cut(s) 255, 473, 1192
BmgT120I GGNCC 3 cut(s) 255, 473, 1192
BmiI GGNNCC 2 cut(s) 131, 414
BmrFI CCNGG 2 cut(s) 165, 793
BmsI GCATC 7 cut(s) 352, 411, 490, 544, 623, 695, 1318
BmtI GCTAGC 1 cut(s) 927
BpuEI CTTGAG 1 cut(s) 1285
BsaJI CCNNGG 2 cut(s) 164, 1510
Bsc4I CCNNNNNNNGG 3 cut(s) 376, 1106, 1572
Bse1I ACTGG 3 cut(s) 69, 762, 1100
Bse21I CCTNAGG 1 cut(s) 728
Bse3DI GCAATG 1 cut(s) 1295
BseBI CCWGG 2 cut(s) 165, 793
BseDI CCNNGG 2 cut(s) 164, 1510
BseGI GGATG 7 cut(s) 398, 402, 445, 638, 654, 710, 801
BseLI CCNNNNNNNGG 3 cut(s) 376, 1106, 1572
BseMI GCAATG 1 cut(s) 1295
BseMII CTCAG 4 cut(s) 389, 742, 1001, 1062
BseNI ACTGG 3 cut(s) 69, 762, 1100
BseSI GKGCMC 1 cut(s) 596
BseXI GCAGC 4 cut(s) 515, 1192, 1314, 1607
Bsh1236I CGCG 2 cut(s) 803, 1360
BshFI GGCC 2 cut(s) 446, 875
BsiHKAI GWGCWC 1 cut(s) 596
BslFI GGGAC 2 cut(s) 681, 995
BslI CCNNNNNNNGG 3 cut(s) 376, 1106, 1572
BsmAI GTCTC 4 cut(s) 415, 469, 1349, 1434
BsmFI GGGAC 2 cut(s) 681, 995
BsmI GAATGC 2 cut(s) 15, 1507
BsnI GGCC 2 cut(s) 446, 875
Bsp1286I GDGCHC 1 cut(s) 596
Bsp143I GATC 6 cut(s) 118, 559, 772, 798, 817, 840
BspACI CCGC 6 cut(s) 71, 370, 803, 1157, 1358, 1645
BspANI GGCC 2 cut(s) 446, 875
BspCNI CTCAG 4 cut(s) 390, 741, 1000, 1061
BspFNI CGCG 2 cut(s) 803, 1360
BspLI GGNNCC 2 cut(s) 131, 414
BspMI ACCTGC 1 cut(s) 283
BspOI GCTAGC 1 cut(s) 927
BspPI GGATC 2 cut(s) 767, 835
BspQI GCTCTTC 1 cut(s) 813
BspTI CTTAAG 1 cut(s) 1376
BsrDI GCAATG 1 cut(s) 1295
BsrI ACTGG 3 cut(s) 69, 762, 1100
BssECI CCNNGG 2 cut(s) 164, 1510
BssMI GATC 6 cut(s) 118, 559, 772, 798, 817, 840
BssNAI GTATAC 1 cut(s) 1445
BssSI CACGAG 1 cut(s) 595
Bst1107I GTATAC 1 cut(s) 1445
Bst2BI CACGAG 1 cut(s) 595
Bst2UI CCWGG 2 cut(s) 165, 793
Bst4CI ACNGT 3 cut(s) 412, 455, 1642
Bst6I CTCTTC 4 cut(s) 63, 813, 1334, 1413
BstAFI CTTAAG 1 cut(s) 1376
BstC8I GCNNGC 3 cut(s) 681, 925, 1307
BstDEI CTNAG 4 cut(s) 398, 728, 987, 1048
BstDSI CCRYGG 1 cut(s) 1510
BstF5I GGATG 7 cut(s) 398, 402, 445, 638, 654, 710, 801
BstFNI CGCG 2 cut(s) 803, 1360
BstKTI GATC 6 cut(s) 121, 562, 775, 801, 820, 843
BstMAI GTCTC 4 cut(s) 415, 469, 1349, 1434
BstMBI GATC 6 cut(s) 118, 559, 772, 798, 817, 840
BstMWI GCNNNNNNNGC 2 cut(s) 929, 1299
BstNI CCWGG 2 cut(s) 165, 793
BstNSI RCATGY 1 cut(s) 535
BstSCI CCNGG 2 cut(s) 163, 791
BstSLI GKGCMC 1 cut(s) 596
BstUI CGCG 2 cut(s) 803, 1360
BstV1I GCAGC 4 cut(s) 515, 1192, 1314, 1607
BstX2I RGATCY 1 cut(s) 840
BstYI RGATCY 1 cut(s) 840
BstZ17I GTATAC 1 cut(s) 1445
Bsu36I CCTNAGG 1 cut(s) 728
BsuRI GGCC 2 cut(s) 446, 875
BtgI CCRYGG 1 cut(s) 1510
BtsCI GGATG 7 cut(s) 398, 402, 445, 638, 654, 710, 801
BtsI GCAGTG 1 cut(s) 232
BtsIMutI CAGTG 3 cut(s) 62, 232, 755
BveI ACCTGC 1 cut(s) 283
Cac8I GCNNGC 3 cut(s) 681, 925, 1307
CaiI CAGNNNCTG 1 cut(s) 917
Cfr13I GGNCC 3 cut(s) 255, 473, 1192
Csp6I GTAC 5 cut(s) 114, 991, 1113, 1423, 1543
CviAII CATG 7 cut(s) 494, 508, 532, 815, 952, 1315, 1572
CviQI GTAC 5 cut(s) 114, 991, 1113, 1423, 1543
DdeI CTNAG 4 cut(s) 398, 728, 987, 1048
DpnI GATC 6 cut(s) 120, 561, 774, 800, 819, 842
DpnII GATC 6 cut(s) 118, 559, 772, 798, 817, 840
Eam1104I CTCTTC 4 cut(s) 63, 813, 1334, 1413
EarI CTCTTC 4 cut(s) 63, 813, 1334, 1413
EciI GGCGGA 1 cut(s) 1634
Eco147I AGGCCT 1 cut(s) 446
Eco32I GATATC 2 cut(s) 1366, 1584
Eco47I GGWCC 3 cut(s) 255, 473, 1192
Eco57I CTGAAG 2 cut(s) 794, 1128
Eco81I CCTNAGG 1 cut(s) 728
EcoRI GAATTC 1 cut(s) 290
EcoRII CCWGG 2 cut(s) 163, 791
EcoRV GATATC 2 cut(s) 1366, 1584
EcoT22I ATGCAT 1 cut(s) 537
FaeI CATG 7 cut(s) 497, 511, 535, 818, 955, 1318, 1575
FaqI GGGAC 2 cut(s) 681, 995
FatI CATG 7 cut(s) 493, 507, 531, 814, 951, 1314, 1571
FauI CCCGC 1 cut(s) 1365
FblI GTMKAC 2 cut(s) 901, 1444
Fnu4HI GCNGC 6 cut(s) 504, 804, 1158, 1181, 1303, 1596
FokI GGATG 7 cut(s) 389, 405, 452, 645, 661, 717, 808
Fsp4HI GCNGC 6 cut(s) 504, 804, 1158, 1181, 1303, 1596
FspBI CTAG 4 cut(s) 485, 575, 821, 924
GluI GCNGC 6 cut(s) 504, 804, 1158, 1181, 1303, 1596
HaeIII GGCC 2 cut(s) 446, 875
Hin1II CATG 7 cut(s) 497, 511, 535, 818, 955, 1318, 1575
HincII GTYRAC 1 cut(s) 902
HindII GTYRAC 1 cut(s) 902
HindIII AAGCTT 1 cut(s) 362
HinfI GANTC 8 cut(s) 152, 617, 853, 914, 1128, 1164, 1256, 1342
HphI GGTGA 2 cut(s) 359, 1493
Hpy166II GTNNAC 3 cut(s) 594, 902, 1445
Hpy188I TCNGA 9 cut(s) 78, 123, 259, 399, 772, 1147, 1176, 1370, 1402
Hpy188III TCNNGA 9 cut(s) 20, 347, 390, 575, 716, 857, 1089, 1264, 1336
Hpy8I GTNNAC 3 cut(s) 594, 902, 1445
Hpy99I CGWCG 2 cut(s) 263, 432
HpyAV CCTTC 2 cut(s) 430, 1459
HpyCH4III ACNGT 3 cut(s) 412, 455, 1642
HpyCH4IV ACGT 1 cut(s) 862
HpyF10VI GCNNNNNNNGC 2 cut(s) 929, 1299
HpyF3I CTNAG 4 cut(s) 398, 728, 987, 1048
HpySE526I ACGT 1 cut(s) 862
Hsp92II CATG 7 cut(s) 497, 511, 535, 818, 955, 1318, 1575
Kzo9I GATC 6 cut(s) 118, 559, 772, 798, 817, 840
LguI GCTCTTC 1 cut(s) 813
LmnI GCTCC 2 cut(s) 129, 676
Lsp1109I GCAGC 4 cut(s) 515, 1192, 1314, 1607
LweI GCATC 7 cut(s) 352, 411, 490, 544, 623, 695, 1318
MaeI CTAG 4 cut(s) 485, 575, 821, 924
MaeII ACGT 1 cut(s) 862
MaeIII GTNAC 3 cut(s) 32, 1040, 1490
MalI GATC 6 cut(s) 120, 561, 774, 800, 819, 842
MboI GATC 6 cut(s) 118, 559, 772, 798, 817, 840
MboII GAAGA 9 cut(s) 50, 184, 343, 569, 800, 986, 1351, 1427, 1430
MfeI CAATTG 2 cut(s) 321, 468
MflI RGATCY 1 cut(s) 840
MhlI GDGCHC 1 cut(s) 596
MlyI GAGTC 4 cut(s) 161, 611, 908, 1351
MmeI TCCRAC 3 cut(s) 282, 440, 563
Mph1103I ATGCAT 1 cut(s) 537
MroXI GAANNNNTTC 2 cut(s) 363, 1469
MseI TTAA 4 cut(s) 695, 879, 1230, 1377
MspCI CTTAAG 1 cut(s) 1376
MspR9I CCNGG 2 cut(s) 165, 793
MunI CAATTG 2 cut(s) 321, 468
Mva1269I GAATGC 2 cut(s) 15, 1507
MvaI CCWGG 2 cut(s) 165, 793
MvnI CGCG 2 cut(s) 803, 1360
MwoI GCNNNNNNNGC 2 cut(s) 929, 1299
NdeII GATC 6 cut(s) 118, 559, 772, 798, 817, 840
NheI GCTAGC 1 cut(s) 923
NlaIII CATG 7 cut(s) 497, 511, 535, 818, 955, 1318, 1575
NlaIV GGNNCC 2 cut(s) 131, 414
NmuCI GTSAC 2 cut(s) 1040, 1490
NsiI ATGCAT 1 cut(s) 537
NspI RCATGY 1 cut(s) 535
PceI AGGCCT 1 cut(s) 446
PciSI GCTCTTC 1 cut(s) 813
PcsI WCGNNNNNNNCGW 2 cut(s) 416, 1357
PctI GAATGC 2 cut(s) 15, 1507
PdmI GAANNNNTTC 2 cut(s) 363, 1469
PfeI GAWTC 4 cut(s) 853, 1128, 1164, 1256
PflFI GACNNNGTC 1 cut(s) 917
PflMI CCANNNNNTGG 1 cut(s) 1572
PkrI GCNGC 6 cut(s) 505, 805, 1159, 1182, 1304, 1597
PleI GAGTC 4 cut(s) 160, 611, 908, 1350
PpsI GAGTC 4 cut(s) 160, 611, 908, 1350
PshBI ATTAAT 1 cut(s) 695
Psp1406I AACGTT 1 cut(s) 862
Psp6I CCWGG 2 cut(s) 163, 791
PspGI CCWGG 2 cut(s) 163, 791
PspN4I GGNNCC 2 cut(s) 131, 414
PspPI GGNCC 3 cut(s) 255, 473, 1192
PsrI GAACNNNNNNTAC 2 cut(s) 1381, 1413
PstNI CAGNNNCTG 1 cut(s) 917
PsuI RGATCY 1 cut(s) 840
PsyI GACNNNGTC 1 cut(s) 917
RsaI GTAC 5 cut(s) 115, 992, 1114, 1424, 1544
RsaNI GTAC 5 cut(s) 114, 991, 1113, 1423, 1543
SalI GTCGAC 1 cut(s) 900
SapI GCTCTTC 1 cut(s) 813
SaqAI TTAA 4 cut(s) 695, 879, 1230, 1377
SatI GCNGC 6 cut(s) 504, 804, 1158, 1181, 1303, 1596
Sau3AI GATC 6 cut(s) 118, 559, 772, 798, 817, 840
Sau96I GGNCC 3 cut(s) 255, 473, 1192
ScaI AGTACT 2 cut(s) 1114, 1424
SchI GAGTC 4 cut(s) 161, 611, 908, 1351
ScrFI CCNGG 2 cut(s) 165, 793
SduI GDGCHC 1 cut(s) 596
SfaNI GCATC 7 cut(s) 352, 411, 490, 544, 623, 695, 1318
SinI GGWCC 3 cut(s) 255, 473, 1192
SmlI CTYRAG 2 cut(s) 1264, 1376
SmoI CTYRAG 2 cut(s) 1264, 1376
SseBI AGGCCT 1 cut(s) 446
SsiI CCGC 6 cut(s) 71, 370, 803, 1157, 1358, 1645
SspI AATATT 1 cut(s) 780
SspMI CTAG 4 cut(s) 485, 575, 821, 924
StuI AGGCCT 1 cut(s) 446
StyD4I CCNGG 2 cut(s) 163, 791
TaaI ACNGT 3 cut(s) 412, 455, 1642
TaiI ACGT 1 cut(s) 865
TaqI TCGA 7 cut(s) 427, 831, 858, 901, 907, 1167, 1284
TatI WGTACW 4 cut(s) 990, 1112, 1422, 1542
TauI GCSGC 2 cut(s) 806, 1160
TfiI GAWTC 4 cut(s) 853, 1128, 1164, 1256
Tru1I TTAA 4 cut(s) 695, 879, 1230, 1377
Tru9I TTAA 4 cut(s) 695, 879, 1230, 1377
TscAI CASTG 3 cut(s) 69, 232, 762
TseFI GTSAC 2 cut(s) 1040, 1490
TseI GCWGC 4 cut(s) 503, 1180, 1302, 1595
Tsp45I GTSAC 2 cut(s) 1040, 1490
TspDTI ATGAA 7 cut(s) 184, 700, 968, 1091, 1237, 1467, 1600
TspGWI ACGGA 2 cut(s) 717, 1205
TspRI CASTG 3 cut(s) 69, 232, 762
Tth111I GACNNNGTC 1 cut(s) 917
Van91I CCANNNNNTGG 1 cut(s) 1572
Vha464I CTTAAG 1 cut(s) 1376
VneI GTGCAC 1 cut(s) 592
VpaK11BI GGWCC 3 cut(s) 255, 473, 1192
VspI ATTAAT 1 cut(s) 695
XapI RAATTY 5 cut(s) 101, 290, 624, 1019, 1233
XbaI TCTAGA 1 cut(s) 574
XceI RCATGY 1 cut(s) 535
XmiI GTMKAC 2 cut(s) 901, 1444
XmnI GAANNNNTTC 2 cut(s) 363, 1469
XspI CTAG 4 cut(s) 485, 575, 821, 924
ZrmI AGTACT 2 cut(s) 1114, 1424
Zsp2I ATGCAT 1 cut(s) 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.