Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001010.1

Orthogroup ID

OG0007092

Physical Location & Seq

Genomic Coordinates Forward (+)

247062 .. 247889

Gene Structure 828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

atgggtttgccttggtatcgtgttcataccgtcgtattgaatgatcccggtttgatttctgtccatataatgcatacagctctggttgctggttgggccggttcgatggctctatacgaattagccgtttttgatccctctgatcctgttcttgatccaatgtggagacagggtatgttcgttatacccttcatgactcgtttaggaataacgaattcatggggcggttggagtattacaggggggactgtaacgaatccgggtatttggagttacgaaggtgcggccggggcacatattgtgttttctggcttgagttttttggcagctatctggcattgggtgtattgggatctagaaatatttactgatgaacgtacaggaaaaccctctttggatttgcctaagatctttggaattcatttatttctctcaggagtggcttgctttggttttggtgcatttcatgtaacaggattgtatggtcctggaatatgggtgtccgatccttatggactaaacggaagggtacaggccgtaaatccagcgtggggtgtggagggttttgatccttttgttccgggaggaatagcttctcatcatattgaagcagggaccttaggtatattggcaggtctatttcatcttagtgttcatccaccccaacgcctatacaaaggattacgtatgggaaatattgaaaccgtcctttccagtagtattgctgctgtcttttttgcagcttttgtagttgctggaactatgtggtatggttcaaagagagacacaaatttatgttttgctaatgttgaatccatcttcacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0010207 GO:0010287 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PSII

Protein Analysis

275

Amino Acids

29.88

Weight (kDa)

5.95

Isoelectric Point (pI)

25.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSII	PF00421	1 - 259	7.8e-138	Photosystem II protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00680
malus_domestica	MD00G1121600.v1.1
prunus_persica	Prupe.7G029800_v2.0.a1
pyrus_communis	pycom05g10070
rosa_chinensis	RchiOBHm_Chr6g0260471 RchiOBHm_CPg0501971
rosa_laevigata	RLG00000000054 RLG00000000070 RLG00000000176 RLG00000000220 RLG00000000266 RLG00000033771 RLG00000037104
rosa_multiflora	Rmu_sc0001010.1_g000065 Rmu_sc0004517.1_g000004
rosa_roxburghii	Rroxscaffold_2G00107490 Rroxscaffold_2G00119020 Rroxscaffold_2G00119180 Rroxscaffold_3G00233680
rosa_rugosa	RorugMtG0002600
rosa_samantha	Rh2CG305200 Rh2DG341500 Rh7AG405500 Rh7CG423100
rosa_wichuraiana	Rw7G013590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	623
AciI	CCGC	2 cut(s)	225, 284
AclWI	GGATC	7 cut(s)	38, 128, 137, 149, 360, 500, 563
AcoI	YGGCCR	1 cut(s)	285
AcsI	RAATTY	3 cut(s)	214, 417, 790
AfaI	GTAC	2 cut(s)	379, 531
AfiI	CCNNNNNNNGG	1 cut(s)	551
AgsI	TTSAA	5 cut(s)	40, 608, 701, 777, 812
AjnI	CCWGG	1 cut(s)	487
AluBI	AGCT	4 cut(s)	80, 329, 593, 743
AluI	AGCT	4 cut(s)	80, 329, 593, 743
Alw26I	GTCTC	2 cut(s)	160, 777
AlwI	GGATC	7 cut(s)	38, 128, 137, 149, 360, 500, 563
AoxI	GGCC	3 cut(s)	96, 285, 534
ApeKI	GCWGC	3 cut(s)	326, 725, 740
ApoI	RAATTY	3 cut(s)	214, 417, 790
Asp700I	GAANNNNTTC	1 cut(s)	592
AspS9I	GGNCC	3 cut(s)	96, 485, 615
AsuC2I	CCSGG	4 cut(s)	48, 261, 289, 582
AvaII	GGWCC	2 cut(s)	485, 615
AxyI	CCTNAGG	1 cut(s)	619
BaeGI	GKGCMC	1 cut(s)	295
BbvI	GCAGC	3 cut(s)	338, 712, 752
BccI	CCATC	2 cut(s)	100, 824
BceAI	ACGGC	2 cut(s)	110, 521
BciT130I	CCWGG	1 cut(s)	489
BcnI	CCSGG	4 cut(s)	48, 261, 289, 582
BcoDI	GTCTC	2 cut(s)	160, 777
BfaI	CTAG	1 cut(s)	356
BfuAI	ACCTGC	1 cut(s)	623
BglII	AGATCT	1 cut(s)	408
BisI	GCNGC	4 cut(s)	285, 327, 726, 741
BlsI	GCNGC	4 cut(s)	286, 328, 727, 742
Bme1390I	CCNGG	5 cut(s)	48, 261, 289, 489, 582
Bme18I	GGWCC	2 cut(s)	485, 615
BmgT120I	GGNCC	3 cut(s)	96, 485, 615
BmiI	GGNNCC	1 cut(s)	616
BmrFI	CCNGG	5 cut(s)	48, 261, 289, 489, 582
BpuEI	CTTGAG	1 cut(s)	334
BpuMI	CCSGG	4 cut(s)	48, 261, 289, 582
BsaAI	YACGTR	1 cut(s)	686
BsaJI	CCNNGG	2 cut(s)	11, 288
BsaXI	ACNNNNNCTCC	2 cut(s)	157, 187
Bsc4I	CCNNNNNNNGG	1 cut(s)	551
Bse118I	RCCGGY	1 cut(s)	98
Bse1I	ACTGG	1 cut(s)	714
Bse21I	CCTNAGG	1 cut(s)	619
BseBI	CCWGG	1 cut(s)	489
BseDI	CCNNGG	2 cut(s)	11, 288
BseGI	GGATG	1 cut(s)	655
BseLI	CCNNNNNNNGG	1 cut(s)	551
BseMII	CTCAG	1 cut(s)	447
BseNI	ACTGG	1 cut(s)	714
BseSI	GKGCMC	1 cut(s)	295
BseX3I	CGGCCG	1 cut(s)	285
BseXI	GCAGC	3 cut(s)	338, 712, 752
Bsh1285I	CGRYCG	1 cut(s)	288
BshFI	GGCC	3 cut(s)	98, 287, 536
BsiEI	CGRYCG	1 cut(s)	288
BsiSI	CCGG	5 cut(s)	48, 99, 260, 288, 581
BslFI	GGGAC	2 cut(s)	259, 628
BslI	CCNNNNNNNGG	1 cut(s)	551
BsmAI	GTCTC	2 cut(s)	160, 777
BsmFI	GGGAC	2 cut(s)	259, 628
BsnI	GGCC	3 cut(s)	98, 287, 536
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp143I	GATC	8 cut(s)	43, 133, 142, 154, 352, 408, 505, 568
BspACI	CCGC	2 cut(s)	225, 284
BspANI	GGCC	3 cut(s)	98, 287, 536
BspCNI	CTCAG	1 cut(s)	446
BspHI	TCATGA	1 cut(s)	192
BspLI	GGNNCC	1 cut(s)	616
BspMI	ACCTGC	1 cut(s)	623
BspPI	GGATC	7 cut(s)	38, 128, 137, 149, 360, 500, 563
BsrFI	RCCGGY	1 cut(s)	98
BsrI	ACTGG	1 cut(s)	714
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	2 cut(s)	11, 288
BssMI	GATC	8 cut(s)	43, 133, 142, 154, 352, 408, 505, 568
BssT1I	CCWWGG	1 cut(s)	11
Bst2UI	CCWGG	1 cut(s)	489
Bst4CI	ACNGT	3 cut(s)	31, 250, 706
BstBAI	YACGTR	1 cut(s)	686
BstC8I	GCNNGC	1 cut(s)	445
BstDEI	CTNAG	5 cut(s)	405, 433, 619, 647, 825
BstF5I	GGATG	1 cut(s)	655
BstKTI	GATC	8 cut(s)	46, 136, 145, 157, 355, 411, 508, 571
BstMAI	GTCTC	2 cut(s)	160, 777
BstMBI	GATC	8 cut(s)	43, 133, 142, 154, 352, 408, 505, 568
BstMCI	CGRYCG	1 cut(s)	288
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 95, 290
BstNI	CCWGG	1 cut(s)	489
BstSCI	CCNGG	5 cut(s)	46, 259, 287, 487, 580
BstSLI	GKGCMC	1 cut(s)	295
BstSNI	TACGTA	1 cut(s)	686
BstV1I	GCAGC	3 cut(s)	338, 712, 752
BstX2I	RGATCY	2 cut(s)	352, 408
BstYI	RGATCY	2 cut(s)	352, 408
BstZI	CGGCCG	1 cut(s)	285
Bsu36I	CCTNAGG	1 cut(s)	619
BsuRI	GGCC	3 cut(s)	98, 287, 536
BtsCI	GGATG	1 cut(s)	655
BveI	ACCTGC	1 cut(s)	623
Cac8I	GCNNGC	1 cut(s)	445
CciI	TCATGA	1 cut(s)	192
Cfr10I	RCCGGY	1 cut(s)	98
Cfr13I	GGNCC	3 cut(s)	96, 485, 615
Csp6I	GTAC	2 cut(s)	378, 530
CviAII	CATG	3 cut(s)	193, 219, 467
CviQI	GTAC	2 cut(s)	378, 530
DdeI	CTNAG	5 cut(s)	405, 433, 619, 647, 825
DpnI	GATC	8 cut(s)	45, 135, 144, 156, 354, 410, 507, 570
DpnII	GATC	8 cut(s)	43, 133, 142, 154, 352, 408, 505, 568
EaeI	YGGCCR	1 cut(s)	285
EagI	CGGCCG	1 cut(s)	285
EclXI	CGGCCG	1 cut(s)	285
Eco105I	TACGTA	1 cut(s)	686
Eco130I	CCWWGG	1 cut(s)	11
Eco47I	GGWCC	2 cut(s)	485, 615
Eco52I	CGGCCG	1 cut(s)	285
Eco81I	CCTNAGG	1 cut(s)	619
EcoO109I	RGGNCCY	1 cut(s)	615
EcoRI	GAATTC	2 cut(s)	214, 417
EcoRII	CCWGG	1 cut(s)	487
EcoT14I	CCWWGG	1 cut(s)	11
EcoT22I	ATGCAT	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	11
FaeI	CATG	3 cut(s)	196, 222, 470
FaqI	GGGAC	2 cut(s)	259, 628
FatI	CATG	3 cut(s)	192, 218, 466
Fnu4HI	GCNGC	4 cut(s)	285, 327, 726, 741
FokI	GGATG	1 cut(s)	642
Fsp4HI	GCNGC	4 cut(s)	285, 327, 726, 741
FspBI	CTAG	1 cut(s)	356
GluI	GCNGC	4 cut(s)	285, 327, 726, 741
HaeIII	GGCC	3 cut(s)	98, 287, 536
HapII	CCGG	5 cut(s)	48, 99, 260, 288, 581
Hin1II	CATG	3 cut(s)	196, 222, 470
HinfI	GANTC	3 cut(s)	196, 256, 812
HpaII	CCGG	5 cut(s)	48, 99, 260, 288, 581
Hpy188I	TCNGA	2 cut(s)	142, 505
Hpy188III	TCNNGA	4 cut(s)	152, 193, 356, 435
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	3 cut(s)	199, 272, 519
HpyCH4III	ACNGT	3 cut(s)	31, 250, 706
HpyCH4IV	ACGT	2 cut(s)	376, 685
HpyCH4V	TGCA	3 cut(s)	73, 461, 740
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 95, 290
HpyF3I	CTNAG	5 cut(s)	405, 433, 619, 647, 825
HpySE526I	ACGT	2 cut(s)	376, 685
Hsp92II	CATG	3 cut(s)	196, 222, 470
Kzo9I	GATC	8 cut(s)	43, 133, 142, 154, 352, 408, 505, 568
Lsp1109I	GCAGC	3 cut(s)	338, 712, 752
MaeI	CTAG	1 cut(s)	356
MaeII	ACGT	2 cut(s)	376, 685
MaeIII	GTNAC	3 cut(s)	250, 272, 469
MalI	GATC	8 cut(s)	45, 135, 144, 156, 354, 410, 507, 570
MboI	GATC	8 cut(s)	43, 133, 142, 154, 352, 408, 505, 568
MboII	GAAGA	1 cut(s)	811
MflI	RGATCY	2 cut(s)	352, 408
MhlI	GDGCHC	1 cut(s)	295
MluCI	AATT	4 cut(s)	119, 214, 417, 790
MlyI	GAGTC	1 cut(s)	190
MmeI	TCCRAC	1 cut(s)	209
MnlI	CCTC	4 cut(s)	148, 400, 553, 578
Mph1103I	ATGCAT	1 cut(s)	75
MroXI	GAANNNNTTC	1 cut(s)	592
MslI	CAYNNNNRTG	1 cut(s)	648
MspI	CCGG	5 cut(s)	48, 99, 260, 288, 581
MspR9I	CCNGG	5 cut(s)	48, 261, 289, 489, 582
MvaI	CCWGG	1 cut(s)	489
MwoI	GCNNNNNNNGC	3 cut(s)	86, 95, 290
NciI	CCSGG	4 cut(s)	48, 261, 289, 582
NdeII	GATC	8 cut(s)	43, 133, 142, 154, 352, 408, 505, 568
NlaIII	CATG	3 cut(s)	196, 222, 470
NlaIV	GGNNCC	1 cut(s)	616
NsiI	ATGCAT	1 cut(s)	75
PagI	TCATGA	1 cut(s)	192
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PdmI	GAANNNNTTC	1 cut(s)	592
PfeI	GAWTC	2 cut(s)	256, 812
PfoI	TCCNGGA	2 cut(s)	487, 580
PkrI	GCNGC	4 cut(s)	286, 328, 727, 742
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
Ppu21I	YACGTR	1 cut(s)	686
PpuMI	RGGWCCY	1 cut(s)	615
Psp5II	RGGWCCY	1 cut(s)	615
Psp6I	CCWGG	1 cut(s)	487
PspGI	CCWGG	1 cut(s)	487
PspN4I	GGNNCC	1 cut(s)	616
PspPI	GGNCC	3 cut(s)	96, 485, 615
PspPPI	RGGWCCY	1 cut(s)	615
PsuI	RGATCY	2 cut(s)	352, 408
RsaI	GTAC	2 cut(s)	379, 531
RsaNI	GTAC	2 cut(s)	378, 530
RseI	CAYNNNNRTG	1 cut(s)	648
SatI	GCNGC	4 cut(s)	285, 327, 726, 741
Sau3AI	GATC	8 cut(s)	43, 133, 142, 154, 352, 408, 505, 568
Sau96I	GGNCC	3 cut(s)	96, 485, 615
SchI	GAGTC	1 cut(s)	190
ScrFI	CCNGG	5 cut(s)	48, 261, 289, 489, 582
SduI	GDGCHC	1 cut(s)	295
SinI	GGWCC	2 cut(s)	485, 615
SmiMI	CAYNNNNRTG	1 cut(s)	648
SmlI	CTYRAG	1 cut(s)	313
SmoI	CTYRAG	1 cut(s)	313
SnaBI	TACGTA	1 cut(s)	686
Sse9I	AATT	4 cut(s)	119, 214, 417, 790
SsiI	CCGC	2 cut(s)	225, 284
SspI	AATATT	2 cut(s)	363, 697
SspMI	CTAG	1 cut(s)	356
StyD4I	CCNGG	5 cut(s)	46, 259, 287, 487, 580
StyI	CCWWGG	1 cut(s)	11
TaaI	ACNGT	3 cut(s)	31, 250, 706
TaiI	ACGT	2 cut(s)	379, 688
TaqI	TCGA	1 cut(s)	104
TasI	AATT	4 cut(s)	119, 214, 417, 790
TauI	GCSGC	1 cut(s)	287
TfiI	GAWTC	2 cut(s)	256, 812
TseI	GCWGC	3 cut(s)	326, 725, 740
TspDTI	ATGAA	8 cut(s)	14, 181, 207, 387, 410, 455, 632, 644
TspGWI	ACGGA	1 cut(s)	537
VpaK11BI	GGWCC	2 cut(s)	485, 615
XapI	RAATTY	3 cut(s)	214, 417, 790
XbaI	TCTAGA	1 cut(s)	355
XmnI	GAANNNNTTC	1 cut(s)	592
XspI	CTAG	1 cut(s)	356
Zsp2I	ATGCAT	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.