Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001287.1

Orthogroup ID

OG0003124

Physical Location & Seq

Genomic Coordinates Forward (+)

108230 .. 113379

Gene Structure 5150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

atggacgacctcaaaagccgctttgtcgtttcgcagcaaaacgaacctgaatcgcacggcgacgacggcctggcctttatggttgacgagctccgcaggctacgagtcgtggaactccggcgcgaggtccccgttgcgacgtttcaatggtgttatcgttggttgacgagctccgcaggctacgccgagaagccgctggaggccttgaaggagattcagtcgcttgtgctgccggtccgatgggctgcggccggtgaccggaatccggcaaaagttggcaagattccggtgaccggtgaccggattccggcgaaagttgaccgaatttcggcaactggtgaccggattccagcggccgatattgcatatcatgccagtacttcattccctggaggagtcaatgcagacgagttactcaattcccgggggcctccttgccatatgaatttggataaacaaaatgattcttctgtgcataggcactctgataagcaaaatgaccctcgaatattgaagaatcttgacagttctgatcaatgtatgaatacagttctgatggaagtggaccatcaatattggattgtacaacctaacagcccaattgatcaagatgtgtcacagacagtcactgatgcagacttcagagcattggtgtcagatgaagtttttcagccagaagttgtctggaagcttcatgatctacaggttacctgtggaactcttggtctttctacagcaactgttaaactaattgatgctgatgggagagagcatattgcttgttcagttggaacgggtccagtggattcagcttacaaggctgttgatctcattgtgaaggaaccagtaacacttgttgagtactccatgaatgcggtcacagaaggaatagatgcaatagccactactcgtgttgcaattcgagttgaaaatagtgatatggtcactggtgagatatctcaacggacattcagtgggattggggcaggaatggacattgttgtttctagtgtcaaggcctacattggtgcattgaacaagatgctaggtttcaaggaaaggtttccattagaggttgcagcagaatcagcagaacgaactgcagtgtctgcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003852 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006551 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009098 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016053 GO:0016740 GO:0016746 GO:0019752 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046912 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00290 ko00620 ko01100 ko01110 ko01210 ko01230 map00290 map00620 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

HMGL-like LeuA_dimer

Protein Analysis

371

Amino Acids

40.59

Weight (kDa)

5.01

Isoelectric Point (pI)

35.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LeuA_dimer	PF08502	209 - 349	5e-32	LeuA allosteric (dimerisation) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18500 AT1G74040 AT1G74040 AT1G74040
fragaria_vesca	FvH4_1g22410 FvH4_1g22460 FvH4_1g22570 FvH4_1g22570 FvH4_1g22570 FvH4_1g22570
malus_domestica	MD01G1019700.v1.1 MD15G1332600.v1.1
prunus_persica	Prupe.6G172500_v2.0.a1 Prupe.6G172500_v2.0.a1 Prupe.6G172500_v2.0.a1
pyrus_communis	pycom01g04920 pycom15g29280
rosa_chinensis	RchiOBHm_Chr2g0116551 RchiOBHm_Chr2g0116561
rosa_laevigata	RLG00000018287 RLG00000018288
rosa_multiflora	Rmu_sc0001287.1_g000019 Rmu_sc0004191.1_g000022 Rmu_sc0004191.1_g000030
rosa_roxburghii	Rroxscaffold_2G00127060 Rroxscaffold_2G00127070
rosa_rugosa	Rorug02G0207600
rosa_samantha	Rh2AG262500 Rh2AG262600 Rh2BG274100 Rh2BG274400 Rh2DG270700 Rh2DG270800 Rh2DG289200 Rh2DG289300
rosa_wichuraiana	Rw2G020670 Rw2G020680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	123
AciI	CCGC	7 cut(s)	19, 94, 174, 194, 248, 353, 875
AcoI	YGGCCR	2 cut(s)	249, 354
AcsI	RAATTY	2 cut(s)	324, 445
AcuI	CTGAAG	1 cut(s)	625
AfaI	GTAC	3 cut(s)	379, 585, 863
AfiI	CCNNNNNNNGG	7 cut(s)	124, 258, 265, 293, 300, 307, 328
AgeI	ACCGGT	1 cut(s)	293
AgsI	TTSAA	6 cut(s)	146, 208, 514, 929, 1036, 1054
AjnI	CCWGG	2 cut(s)	69, 388
AluBI	AGCT	4 cut(s)	91, 171, 691, 812
AluI	AGCT	4 cut(s)	91, 171, 691, 812
Alw21I	GWGCWC	2 cut(s)	93, 173
AlwNI	CAGNNNCTG	3 cut(s)	629, 740, 1109
Ama87I	CYCGRG	1 cut(s)	423
AoxI	GGCC	7 cut(s)	67, 72, 201, 249, 354, 428, 1017
ApeKI	GCWGC	4 cut(s)	34, 229, 245, 1079
ApoI	RAATTY	2 cut(s)	324, 445
AsiGI	ACCGGT	1 cut(s)	293
Asp700I	GAANNNNTTC	2 cut(s)	666, 1062
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	5 cut(s)	127, 235, 428, 565, 797
AsuC2I	CCSGG	2 cut(s)	424, 425
AsuHPI	GGTGA	5 cut(s)	266, 301, 308, 350, 962
AvaI	CYCGRG	1 cut(s)	423
AvaII	GGWCC	4 cut(s)	127, 235, 565, 797
BanII	GRGCYC	2 cut(s)	93, 173
BauI	CACGAG	1 cut(s)	909
Bbv12I	GWGCWC	2 cut(s)	93, 173
BbvI	GCAGC	4 cut(s)	46, 216, 232, 1091
BccI	CCATC	4 cut(s)	234, 550, 576, 755
BceAI	ACGGC	2 cut(s)	73, 82
BciT130I	CCWGG	2 cut(s)	71, 390
BclI	TGATCA	2 cut(s)	532, 604
BcnI	CCSGG	2 cut(s)	424, 425
BfaI	CTAG	2 cut(s)	1008, 1046
BfmI	CTRYAG	3 cut(s)	701, 732, 1101
BisI	GCNGC	8 cut(s)	19, 35, 194, 230, 246, 249, 354, 1080
BlsI	GCNGC	8 cut(s)	20, 36, 195, 231, 247, 250, 355, 1081
BmcAI	AGTACT	2 cut(s)	379, 863
Bme1390I	CCNGG	4 cut(s)	71, 390, 424, 425
Bme18I	GGWCC	4 cut(s)	127, 235, 565, 797
BmeT110I	CYCGRG	1 cut(s)	423
BmgT120I	GGNCC	5 cut(s)	127, 235, 428, 565, 797
BmiI	GGNNCC	4 cut(s)	129, 429, 798, 843
BmrFI	CCNGG	4 cut(s)	71, 390, 424, 425
BmsI	GCATC	4 cut(s)	622, 745, 883, 1032
BpmI	CTGGAG	2 cut(s)	218, 411
BpuMI	CCSGG	2 cut(s)	424, 425
BsaJI	CCNNGG	3 cut(s)	388, 423, 424
BsaWI	WCCGGW	5 cut(s)	258, 286, 293, 300, 342
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
Bsc4I	CCNNNNNNNGG	7 cut(s)	124, 258, 265, 293, 300, 307, 328
Bse118I	RCCGGY	3 cut(s)	232, 251, 293
Bse1I	ACTGG	5 cut(s)	340, 375, 800, 845, 952
BseBI	CCWGG	2 cut(s)	71, 390
BseDI	CCNNGG	3 cut(s)	388, 423, 424
BseLI	CCNNNNNNNGG	7 cut(s)	124, 258, 265, 293, 300, 307, 328
BseNI	ACTGG	5 cut(s)	340, 375, 800, 845, 952
BseRI	GAGGAG	1 cut(s)	408
BseX3I	CGGCCG	2 cut(s)	249, 354
BseXI	GCAGC	4 cut(s)	46, 216, 232, 1091
Bsh1236I	CGCG	1 cut(s)	123
Bsh1285I	CGRYCG	2 cut(s)	252, 357
BshFI	GGCC	7 cut(s)	69, 74, 203, 251, 356, 430, 1019
BshTI	ACCGGT	1 cut(s)	293
BsiEI	CGRYCG	2 cut(s)	252, 357
BsiHKAI	GWGCWC	2 cut(s)	93, 173
BsiHKCI	CYCGRG	1 cut(s)	423
BslFI	GGGAC	1 cut(s)	113
BslI	CCNNNNNNNGG	7 cut(s)	124, 258, 265, 293, 300, 307, 328
BsmFI	GGGAC	1 cut(s)	113
BsmI	GAATGC	1 cut(s)	877
BsnI	GGCC	7 cut(s)	69, 74, 203, 251, 356, 430, 1019
BsoBI	CYCGRG	1 cut(s)	423
Bsp1286I	GDGCHC	2 cut(s)	93, 173
Bsp1407I	TGTACA	1 cut(s)	583
Bsp143I	GATC	4 cut(s)	532, 604, 697, 826
BspACI	CCGC	7 cut(s)	19, 94, 174, 194, 248, 353, 875
BspANI	GGCC	7 cut(s)	69, 74, 203, 251, 356, 430, 1019
BspFNI	CGCG	1 cut(s)	123
BspHI	TCATGA	1 cut(s)	694
BspLI	GGNNCC	4 cut(s)	129, 429, 798, 843
BspMAI	CTGCAG	1 cut(s)	1105
BsrFI	RCCGGY	3 cut(s)	232, 251, 293
BsrGI	TGTACA	1 cut(s)	583
BsrI	ACTGG	5 cut(s)	340, 375, 800, 845, 952
BssAI	RCCGGY	3 cut(s)	232, 251, 293
BssECI	CCNNGG	3 cut(s)	388, 423, 424
BssMI	GATC	4 cut(s)	532, 604, 697, 826
BssSI	CACGAG	1 cut(s)	909
Bst2BI	CACGAG	1 cut(s)	909
Bst2UI	CCWGG	2 cut(s)	71, 390
Bst4CI	ACNGT	4 cut(s)	527, 550, 625, 742
BstAPI	GCANNNNNTGC	2 cut(s)	371, 1109
BstAUI	TGTACA	1 cut(s)	583
BstC8I	GCNNGC	2 cut(s)	98, 178
BstEII	GGTNACC	5 cut(s)	254, 289, 296, 338, 706
BstFNI	CGCG	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	4 cut(s)	535, 607, 700, 829
BstMBI	GATC	4 cut(s)	532, 604, 697, 826
BstMCI	CGRYCG	2 cut(s)	252, 357
BstNI	CCWGG	2 cut(s)	71, 390
BstPI	GGTNACC	5 cut(s)	254, 289, 296, 338, 706
BstSCI	CCNGG	4 cut(s)	69, 388, 422, 423
BstSFI	CTRYAG	3 cut(s)	701, 732, 1101
BstUI	CGCG	1 cut(s)	123
BstV1I	GCAGC	4 cut(s)	46, 216, 232, 1091
BstZI	CGGCCG	2 cut(s)	249, 354
BsuRI	GGCC	7 cut(s)	69, 74, 203, 251, 356, 430, 1019
BtsI	GCAGTG	1 cut(s)	1110
BtsIMutI	CAGTG	5 cut(s)	627, 807, 945, 979, 1110
Cac8I	GCNNGC	2 cut(s)	98, 178
CaiI	CAGNNNCTG	3 cut(s)	629, 740, 1109
CciI	TCATGA	1 cut(s)	694
CfoI	GCGC	1 cut(s)	123
Cfr10I	RCCGGY	3 cut(s)	232, 251, 293
Cfr13I	GGNCC	5 cut(s)	127, 235, 428, 565, 797
Cfr9I	CCCGGG	1 cut(s)	423
CpoI	CGGWCCG	1 cut(s)	235
Csp6I	GTAC	3 cut(s)	378, 584, 862
CspAI	ACCGGT	1 cut(s)	293
CspI	CGGWCCG	1 cut(s)	235
CviAII	CATG	3 cut(s)	371, 695, 868
CviQI	GTAC	3 cut(s)	378, 584, 862
DpnI	GATC	4 cut(s)	534, 606, 699, 828
DpnII	GATC	4 cut(s)	532, 604, 697, 826
EaeI	YGGCCR	2 cut(s)	249, 354
EagI	CGGCCG	2 cut(s)	249, 354
Ecl136II	GAGCTC	2 cut(s)	91, 171
EclXI	CGGCCG	2 cut(s)	249, 354
Eco147I	AGGCCT	2 cut(s)	203, 1019
Eco24I	GRGCYC	2 cut(s)	93, 173
Eco32I	GATATC	1 cut(s)	957
Eco47I	GGWCC	4 cut(s)	127, 235, 565, 797
Eco52I	CGGCCG	2 cut(s)	249, 354
Eco53kI	GAGCTC	2 cut(s)	91, 171
Eco57I	CTGAAG	1 cut(s)	625
Eco88I	CYCGRG	1 cut(s)	423
Eco91I	GGTNACC	5 cut(s)	254, 289, 296, 338, 706
EcoICRI	GAGCTC	2 cut(s)	91, 171
EcoO109I	RGGNCCY	2 cut(s)	127, 428
EcoO65I	GGTNACC	5 cut(s)	254, 289, 296, 338, 706
EcoRII	CCWGG	2 cut(s)	69, 388
EcoRV	GATATC	1 cut(s)	957
EcoT38I	GRGCYC	2 cut(s)	93, 173
FaeI	CATG	3 cut(s)	374, 698, 871
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	3 cut(s)	370, 694, 867
FauNDI	CATATG	1 cut(s)	441
FbaI	TGATCA	2 cut(s)	532, 604
Fnu4HI	GCNGC	8 cut(s)	19, 35, 194, 230, 246, 249, 354, 1080
FriOI	GRGCYC	2 cut(s)	93, 173
Fsp4HI	GCNGC	8 cut(s)	19, 35, 194, 230, 246, 249, 354, 1080
FspBI	CTAG	2 cut(s)	1008, 1046
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	8 cut(s)	19, 35, 194, 230, 246, 249, 354, 1080
GsuI	CTGGAG	2 cut(s)	218, 411
HaeIII	GGCC	7 cut(s)	69, 74, 203, 251, 356, 430, 1019
HhaI	GCGC	1 cut(s)	123
Hin1II	CATG	3 cut(s)	374, 698, 871
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HincII	GTYRAC	3 cut(s)	85, 165, 319
HindII	GTYRAC	3 cut(s)	85, 165, 319
HindIII	AAGCTT	1 cut(s)	689
HphI	GGTGA	5 cut(s)	266, 301, 308, 350, 962
Hpy166II	GTNNAC	4 cut(s)	85, 165, 319, 565
Hpy188I	TCNGA	6 cut(s)	239, 487, 532, 555, 644, 658
Hpy188III	TCNNGA	4 cut(s)	521, 608, 685, 695
Hpy8I	GTNNAC	4 cut(s)	85, 165, 319, 565
Hpy99I	CGWCG	3 cut(s)	65, 68, 142
HpyAV	CCTTC	3 cut(s)	202, 832, 878
HpyCH4III	ACNGT	4 cut(s)	527, 550, 625, 742
HpyCH4IV	ACGT	1 cut(s)	140
HpySE526I	ACGT	1 cut(s)	140
Hsp92II	CATG	3 cut(s)	374, 698, 871
HspAI	GCGC	1 cut(s)	121
Ksp22I	TGATCA	2 cut(s)	532, 604
Kzo9I	GATC	4 cut(s)	532, 604, 697, 826
LmnI	GCTCC	2 cut(s)	96, 176
Lsp1109I	GCAGC	4 cut(s)	46, 216, 232, 1091
LweI	GCATC	4 cut(s)	622, 745, 883, 1032
MaeI	CTAG	2 cut(s)	1008, 1046
MaeII	ACGT	1 cut(s)	140
MalI	GATC	4 cut(s)	534, 606, 699, 828
MboI	GATC	4 cut(s)	532, 604, 697, 826
MboII	GAAGA	2 cut(s)	459, 526
MfeI	CAATTG	1 cut(s)	600
MhlI	GDGCHC	2 cut(s)	93, 173
MluCI	AATT	6 cut(s)	324, 418, 445, 600, 750, 918
MlyI	GAGTC	2 cut(s)	114, 405
MmeI	TCCRAC	1 cut(s)	769
MnlI	CCTC	7 cut(s)	20, 118, 193, 386, 441, 513, 1066
MroXI	GAANNNNTTC	2 cut(s)	666, 1062
MseI	TTAA	1 cut(s)	744
MspA1I	CMGCKG	2 cut(s)	196, 353
MspR9I	CCNGG	4 cut(s)	71, 390, 424, 425
MunI	CAATTG	1 cut(s)	600
Mva1269I	GAATGC	1 cut(s)	877
MvaI	CCWGG	2 cut(s)	71, 390
MvnI	CGCG	1 cut(s)	123
NciI	CCSGG	2 cut(s)	424, 425
NdeI	CATATG	1 cut(s)	441
NdeII	GATC	4 cut(s)	532, 604, 697, 826
NlaIII	CATG	3 cut(s)	374, 698, 871
NlaIV	GGNNCC	4 cut(s)	129, 429, 798, 843
NmeAIII	GCCGAG	1 cut(s)	211
NmuCI	GTSAC	8 cut(s)	254, 289, 296, 338, 615, 625, 877, 943
PagI	TCATGA	1 cut(s)	694
PceI	AGGCCT	2 cut(s)	203, 1019
PctI	GAATGC	1 cut(s)	877
PdmI	GAANNNNTTC	2 cut(s)	666, 1062
PinAI	ACCGGT	1 cut(s)	293
PkrI	GCNGC	8 cut(s)	20, 36, 195, 231, 247, 250, 355, 1081
PleI	GAGTC	2 cut(s)	113, 404
PpsI	GAGTC	2 cut(s)	113, 404
PpuMI	RGGWCCY	1 cut(s)	127
Psp124BI	GAGCTC	2 cut(s)	93, 173
Psp5II	RGGWCCY	1 cut(s)	127
Psp6I	CCWGG	2 cut(s)	69, 388
PspEI	GGTNACC	5 cut(s)	254, 289, 296, 338, 706
PspGI	CCWGG	2 cut(s)	69, 388
PspN4I	GGNNCC	4 cut(s)	129, 429, 798, 843
PspPI	GGNCC	5 cut(s)	127, 235, 428, 565, 797
PspPPI	RGGWCCY	1 cut(s)	127
PstI	CTGCAG	1 cut(s)	1105
PstNI	CAGNNNCTG	3 cut(s)	629, 740, 1109
RsaI	GTAC	3 cut(s)	379, 585, 863
RsaNI	GTAC	3 cut(s)	378, 584, 862
Rsr2I	CGGWCCG	1 cut(s)	235
RsrII	CGGWCCG	1 cut(s)	235
SacI	GAGCTC	2 cut(s)	93, 173
SaqAI	TTAA	1 cut(s)	744
SatI	GCNGC	8 cut(s)	19, 35, 194, 230, 246, 249, 354, 1080
Sau3AI	GATC	4 cut(s)	532, 604, 697, 826
Sau96I	GGNCC	5 cut(s)	127, 235, 428, 565, 797
ScaI	AGTACT	2 cut(s)	379, 863
SchI	GAGTC	2 cut(s)	114, 405
ScrFI	CCNGG	4 cut(s)	71, 390, 424, 425
SduI	GDGCHC	2 cut(s)	93, 173
SfaNI	GCATC	4 cut(s)	622, 745, 883, 1032
SfcI	CTRYAG	3 cut(s)	701, 732, 1101
SinI	GGWCC	4 cut(s)	127, 235, 565, 797
SmaI	CCCGGG	1 cut(s)	425
Sse9I	AATT	6 cut(s)	324, 418, 445, 600, 750, 918
SseBI	AGGCCT	2 cut(s)	203, 1019
SsiI	CCGC	7 cut(s)	19, 94, 174, 194, 248, 353, 875
SspI	AATATT	2 cut(s)	510, 575
SspMI	CTAG	2 cut(s)	1008, 1046
SstI	GAGCTC	2 cut(s)	93, 173
StuI	AGGCCT	2 cut(s)	203, 1019
StyD4I	CCNGG	4 cut(s)	69, 388, 422, 423
TaaI	ACNGT	4 cut(s)	527, 550, 625, 742
TaiI	ACGT	1 cut(s)	143
TaqI	TCGA	2 cut(s)	505, 922
TaqII	GACCGA	1 cut(s)	336
TasI	AATT	6 cut(s)	324, 418, 445, 600, 750, 918
TatI	WGTACW	3 cut(s)	377, 583, 861
TauI	GCSGC	4 cut(s)	21, 196, 251, 356
Tru1I	TTAA	1 cut(s)	744
Tru9I	TTAA	1 cut(s)	744
TscAI	CASTG	5 cut(s)	634, 807, 952, 979, 1110
TseFI	GTSAC	8 cut(s)	254, 289, 296, 338, 615, 625, 877, 943
TseI	GCWGC	4 cut(s)	34, 229, 245, 1079
Tsp45I	GTSAC	8 cut(s)	254, 289, 296, 338, 615, 625, 877, 943
TspDTI	ATGAA	6 cut(s)	372, 458, 557, 675, 683, 884
TspGWI	ACGGA	1 cut(s)	979
TspMI	CCCGGG	1 cut(s)	423
TspRI	CASTG	5 cut(s)	634, 807, 952, 979, 1110
VpaK11BI	GGWCC	4 cut(s)	127, 235, 565, 797
XapI	RAATTY	2 cut(s)	324, 445
XcmI	CCANNNNNNNNNTGG	1 cut(s)	681
XmaI	CCCGGG	1 cut(s)	423
XmnI	GAANNNNTTC	2 cut(s)	666, 1062
XspI	CTAG	2 cut(s)	1008, 1046
ZrmI	AGTACT	2 cut(s)	379, 863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.