Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001348.1

Orthogroup ID

OG0016469

Physical Location & Seq

Genomic Coordinates Forward (+)

68099 .. 68563

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001348.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atgaatcgtttgacgaaatggttgcagaaagatcaagaagaggccgtcacgagaaaccatcgaagagccatgatgatgtctgccgctgccttgcaaaaacaagaactggaagatgaggattcacaatggggtggttcctctgaaggtcgtacttataaggccagggatcgagagattatggatcttcgactcaaagctcaatacttcacggatccgtgcaggtatgaaccaaacatatttcgtaggcgatatagaatgcaaccttgtgtctttgataggaggttgcgcaatgtggccaactacgacccatattttgttcaaacaagagatgttactgggagagtcagcttgtccactgaacaaaagcttatatgcgccatgaggatgctcgcgtatggcatcacagctgacttctgcgatgattacctagatattgcgaagtccactgctattgagattttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_tran

Protein Analysis

154

Amino Acids

18.3

Weight (kDa)

8.69

Isoelectric Point (pI)

55.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016469)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001144.1_g000027 Rmu_sc0001144.1_g000028 Rmu_sc0001348.1_g000015 Rmu_sc0001651.1_g000018 Rmu_sc0001873.1_g000005 Rmu_sc0002539.1_g000055 Rmu_sc0002902.1_g000047 Rmu_sc0003317.1_g000012 Rmu_sc0003927.1_g000004 Rmu_sc0004088.1_g000008 Rmu_sc0004324.1_g000007 Rmu_sc0006273.1_g000016 Rmu_sc0007034.1_g000016 Rmu_sc0007239.1_g000009 Rmu_sc0007314.1_g000008

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	156
Acc16I	TGCGCA	1 cut(s)	287
Acc36I	ACCTGC	1 cut(s)	210
AccII	CGCG	1 cut(s)	392
AciI	CCGC	1 cut(s)	84
AclWI	GGATC	4 cut(s)	174, 189, 206, 219
AcoI	YGGCCR	1 cut(s)	294
AcuI	CTGAAG	1 cut(s)	162
AfaI	GTAC	1 cut(s)	151
AgsI	TTSAA	1 cut(s)	320
AjnI	CCWGG	1 cut(s)	161
AluBI	AGCT	4 cut(s)	197, 348, 367, 407
AluI	AGCT	4 cut(s)	197, 348, 367, 407
AlwI	GGATC	4 cut(s)	174, 189, 206, 219
AoxI	GGCC	3 cut(s)	42, 159, 294
ApeKI	GCWGC	1 cut(s)	86
ArsI	GACNNNNNNTTYG	2 cut(s)	296, 328
AspLEI	GCGC	2 cut(s)	288, 377
BalI	TGGCCA	1 cut(s)	296
BamHI	GGATCC	1 cut(s)	211
BauI	CACGAG	1 cut(s)	49
BbvI	GCAGC	1 cut(s)	73
BccI	CCATC	1 cut(s)	66
BceAI	ACGGC	1 cut(s)	29
BcgI	CGANNNNNNTGC	2 cut(s)	4, 38
BciT130I	CCWGG	1 cut(s)	163
BfaI	CTAG	1 cut(s)	428
BfuAI	ACCTGC	1 cut(s)	210
BisI	GCNGC	2 cut(s)	84, 87
BlsI	GCNGC	2 cut(s)	85, 88
Bme1390I	CCNGG	1 cut(s)	163
BmiI	GGNNCC	2 cut(s)	136, 213
BmrFI	CCNGG	1 cut(s)	163
BmrI	ACTGGG	1 cut(s)	345
BmsI	GCATC	2 cut(s)	375, 408
BmuI	ACTGGG	1 cut(s)	345
BsaJI	CCNNGG	1 cut(s)	162
Bse1I	ACTGG	2 cut(s)	111, 340
Bse3DI	GCAATG	1 cut(s)	295
BseBI	CCWGG	1 cut(s)	163
BseDI	CCNNGG	1 cut(s)	162
BseGI	GGATG	1 cut(s)	390
BseMI	GCAATG	1 cut(s)	295
BseNI	ACTGG	2 cut(s)	111, 340
BseXI	GCAGC	1 cut(s)	73
BsgI	GTGCAG	1 cut(s)	238
Bsh1236I	CGCG	1 cut(s)	392
BshFI	GGCC	3 cut(s)	44, 161, 296
BsmI	GAATGC	1 cut(s)	261
BsnI	GGCC	3 cut(s)	44, 161, 296
Bsp143I	GATC	4 cut(s)	31, 166, 181, 211
BspACI	CCGC	1 cut(s)	84
BspANI	GGCC	3 cut(s)	44, 161, 296
BspFNI	CGCG	1 cut(s)	392
BspLI	GGNNCC	2 cut(s)	136, 213
BspMI	ACCTGC	1 cut(s)	210
BspPI	GGATC	4 cut(s)	174, 189, 206, 219
BspQI	GCTCTTC	1 cut(s)	58
BsrDI	GCAATG	1 cut(s)	295
BsrI	ACTGG	2 cut(s)	111, 340
BssECI	CCNNGG	1 cut(s)	162
BssMI	GATC	4 cut(s)	31, 166, 181, 211
BssSI	CACGAG	1 cut(s)	49
Bst2BI	CACGAG	1 cut(s)	49
Bst2UI	CCWGG	1 cut(s)	163
Bst6I	CTCTTC	2 cut(s)	33, 58
BstC8I	GCNNGC	1 cut(s)	390
BstF5I	GGATG	1 cut(s)	390
BstFNI	CGCG	1 cut(s)	392
BstHHI	GCGC	2 cut(s)	288, 377
BstKTI	GATC	4 cut(s)	34, 169, 184, 214
BstMBI	GATC	4 cut(s)	31, 166, 181, 211
BstNI	CCWGG	1 cut(s)	163
BstSCI	CCNGG	1 cut(s)	161
BstUI	CGCG	1 cut(s)	392
BstV1I	GCAGC	1 cut(s)	73
BstX2I	RGATCY	2 cut(s)	181, 211
BstYI	RGATCY	2 cut(s)	181, 211
BsuRI	GGCC	3 cut(s)	44, 161, 296
BtgZI	GCGATG	1 cut(s)	432
BtsCI	GGATG	1 cut(s)	390
BtsI	GCAGTG	1 cut(s)	444
BtsIMutI	CAGTG	2 cut(s)	354, 444
BveI	ACCTGC	1 cut(s)	210
Cac8I	GCNNGC	1 cut(s)	390
CfoI	GCGC	2 cut(s)	288, 377
Csp6I	GTAC	1 cut(s)	150
CspCI	CAANNNNNGTGG	1 cut(s)	433
CviAII	CATG	2 cut(s)	70, 379
CviJI	RGCY	8 cut(s)	44, 68, 161, 197, 296, 348, 367, 407
CviKI_1	RGCY	8 cut(s)	44, 68, 161, 197, 296, 348, 367, 407
CviQI	GTAC	1 cut(s)	150
DpnI	GATC	4 cut(s)	33, 168, 183, 213
DpnII	GATC	4 cut(s)	31, 166, 181, 211
EaeI	YGGCCR	1 cut(s)	294
Eam1104I	CTCTTC	2 cut(s)	33, 58
EarI	CTCTTC	2 cut(s)	33, 58
Eco57I	CTGAAG	1 cut(s)	162
EcoRII	CCWGG	1 cut(s)	161
FaeI	CATG	2 cut(s)	73, 382
FatI	CATG	2 cut(s)	69, 378
Fnu4HI	GCNGC	2 cut(s)	84, 87
FokI	GGATG	1 cut(s)	397
Fsp4HI	GCNGC	2 cut(s)	84, 87
FspBI	CTAG	1 cut(s)	428
FspI	TGCGCA	1 cut(s)	287
GlaI	GCGC	2 cut(s)	287, 376
GluI	GCNGC	2 cut(s)	84, 87
HaeIII	GGCC	3 cut(s)	44, 161, 296
HhaI	GCGC	2 cut(s)	288, 377
Hin1II	CATG	2 cut(s)	73, 382
Hin6I	GCGC	2 cut(s)	286, 375
HinP1I	GCGC	2 cut(s)	286, 375
HindIII	AAGCTT	1 cut(s)	365
HinfI	GANTC	4 cut(s)	4, 119, 189, 342
Hpy166II	GTNNAC	2 cut(s)	354, 444
Hpy188I	TCNGA	1 cut(s)	142
Hpy188III	TCNNGA	3 cut(s)	35, 49, 170
Hpy8I	GTNNAC	2 cut(s)	354, 444
HpyAV	CCTTC	1 cut(s)	137
HpyCH4V	TGCA	4 cut(s)	25, 94, 219, 259
Hsp92II	CATG	2 cut(s)	73, 382
HspAI	GCGC	2 cut(s)	286, 375
Kzo9I	GATC	4 cut(s)	31, 166, 181, 211
LguI	GCTCTTC	1 cut(s)	58
LpnPI	CCDG	5 cut(s)	92, 148, 175, 205, 321
Lsp1109I	GCAGC	1 cut(s)	73
LweI	GCATC	2 cut(s)	375, 408
MaeI	CTAG	1 cut(s)	428
MaeIII	GTNAC	2 cut(s)	46, 331
MalI	GATC	4 cut(s)	33, 168, 183, 213
MboI	GATC	4 cut(s)	31, 166, 181, 211
MboII	GAAGA	4 cut(s)	50, 75, 122, 176
MflI	RGATCY	2 cut(s)	181, 211
MlsI	TGGCCA	1 cut(s)	296
MluNI	TGGCCA	1 cut(s)	296
MlyI	GAGTC	2 cut(s)	183, 351
MnlI	CCTC	5 cut(s)	34, 109, 148, 273, 375
Mox20I	TGGCCA	1 cut(s)	296
MscI	TGGCCA	1 cut(s)	296
MslI	CAYNNNNRTG	2 cut(s)	74, 383
Msp20I	TGGCCA	1 cut(s)	296
MspA1I	CMGCKG	2 cut(s)	86, 407
MspR9I	CCNGG	1 cut(s)	163
Mva1269I	GAATGC	1 cut(s)	261
MvaI	CCWGG	1 cut(s)	163
MvnI	CGCG	1 cut(s)	392
NdeII	GATC	4 cut(s)	31, 166, 181, 211
NlaIII	CATG	2 cut(s)	73, 382
NlaIV	GGNNCC	2 cut(s)	136, 213
NmuCI	GTSAC	1 cut(s)	46
NsbI	TGCGCA	1 cut(s)	287
PciSI	GCTCTTC	1 cut(s)	58
PctI	GAATGC	1 cut(s)	261
PfeI	GAWTC	2 cut(s)	4, 119
PkrI	GCNGC	2 cut(s)	85, 88
PleI	GAGTC	2 cut(s)	183, 350
PpsI	GAGTC	2 cut(s)	183, 350
PsiI	TTATAA	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	161
PspGI	CCWGG	1 cut(s)	161
PspN4I	GGNNCC	2 cut(s)	136, 213
PsuI	RGATCY	2 cut(s)	181, 211
PvuII	CAGCTG	1 cut(s)	407
RsaI	GTAC	1 cut(s)	151
RsaNI	GTAC	1 cut(s)	150
RseI	CAYNNNNRTG	2 cut(s)	74, 383
SapI	GCTCTTC	1 cut(s)	58
SatI	GCNGC	2 cut(s)	84, 87
Sau3AI	GATC	4 cut(s)	31, 166, 181, 211
SchI	GAGTC	2 cut(s)	183, 351
ScrFI	CCNGG	1 cut(s)	163
SetI	ASST	9 cut(s)	148, 199, 224, 265, 284, 350, 369, 409, 429
SfaNI	GCATC	2 cut(s)	375, 408
SmiMI	CAYNNNNRTG	2 cut(s)	74, 383
SsiI	CCGC	1 cut(s)	84
SspMI	CTAG	1 cut(s)	428
StyD4I	CCNGG	1 cut(s)	161
TaqI	TCGA	3 cut(s)	61, 169, 187
TauI	GCSGC	1 cut(s)	86
TfiI	GAWTC	2 cut(s)	4, 119
TscAI	CASTG	2 cut(s)	361, 451
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	1 cut(s)	86
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	2 cut(s)	17, 240
TspGWI	ACGGA	2 cut(s)	204, 224
TspRI	CASTG	2 cut(s)	361, 451
XspI	CTAG	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.