Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003317.1

Orthogroup ID

OG0016469

Physical Location & Seq

Genomic Coordinates Forward (+)

41196 .. 41570

Gene Structure 375 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003317.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

atgaatcgtttaacgaaatggttgcagaaagatcaagaagaggccgtcacgagaagccgtcgacgagccttgatgatgtctgtcgctgccttgcaaatccaaactctggaagatgaggattcacaatggggtggttcttcagaaggtcgtacctataaggccagggatcgagagctgatggatcttcgactcaaagctcaatacttcactgatccgtgcaggtatgaaccaaacatatttcgtaggcgatatagaatgcaaccttgggtctttgacaggatgatgcgcgacgtggctaactacgacccatattttgttcaaacaagagatgcttgtgggagactaagcttatccaccgaacaaaagctgacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_tran

Protein Analysis

124

Amino Acids

14.97

Weight (kDa)

9.46

Isoelectric Point (pI)

64.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016469)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001144.1_g000027 Rmu_sc0001144.1_g000028 Rmu_sc0001348.1_g000015 Rmu_sc0001651.1_g000018 Rmu_sc0001873.1_g000005 Rmu_sc0002539.1_g000055 Rmu_sc0002902.1_g000047 Rmu_sc0003317.1_g000012 Rmu_sc0003927.1_g000004 Rmu_sc0004088.1_g000008 Rmu_sc0004324.1_g000007 Rmu_sc0006273.1_g000016 Rmu_sc0007034.1_g000016 Rmu_sc0007239.1_g000009 Rmu_sc0007314.1_g000008

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	210
AccB7I	CCANNNNNTGG	1 cut(s)	106
AccI	GTMKAC	1 cut(s)	61
AccII	CGCG	1 cut(s)	288
AclWI	GGATC	3 cut(s)	174, 189, 206
AcuI	CTGAAG	1 cut(s)	123
AfaI	GTAC	1 cut(s)	151
AfiI	CCNNNNNNNGG	1 cut(s)	106
AgsI	TTSAA	1 cut(s)	320
AjiI	CACGTC	1 cut(s)	292
AjnI	CCWGG	1 cut(s)	161
AjuI	GAANNNNNNNTTGG	2 cut(s)	247, 279
AluBI	AGCT	4 cut(s)	175, 197, 348, 367
AluI	AGCT	4 cut(s)	175, 197, 348, 367
Alw26I	GTCTC	1 cut(s)	334
AlwI	GGATC	3 cut(s)	174, 189, 206
AoxI	GGCC	2 cut(s)	42, 159
ApeKI	GCWGC	1 cut(s)	86
ArsI	GACNNNNNNTTYG	2 cut(s)	296, 328
AspLEI	GCGC	1 cut(s)	288
BauI	CACGAG	1 cut(s)	49
BbvI	GCAGC	1 cut(s)	73
BccI	CCATC	1 cut(s)	172
BceAI	ACGGC	2 cut(s)	29, 42
BcgI	CGANNNNNNTGC	2 cut(s)	4, 38
BciT130I	CCWGG	1 cut(s)	163
BcoDI	GTCTC	1 cut(s)	334
BfuAI	ACCTGC	1 cut(s)	210
BisI	GCNGC	1 cut(s)	87
BlsI	GCNGC	1 cut(s)	88
Bme1390I	CCNGG	1 cut(s)	163
BmgBI	CACGTC	1 cut(s)	292
BmrFI	CCNGG	1 cut(s)	163
BmsI	GCATC	2 cut(s)	273, 319
BsaJI	CCNNGG	2 cut(s)	162, 263
Bsc4I	CCNNNNNNNGG	1 cut(s)	106
BseBI	CCWGG	1 cut(s)	163
BseDI	CCNNGG	2 cut(s)	162, 263
BseGI	GGATG	1 cut(s)	285
BseLI	CCNNNNNNNGG	1 cut(s)	106
BseXI	GCAGC	1 cut(s)	73
BsgI	GTGCAG	1 cut(s)	238
Bsh1236I	CGCG	1 cut(s)	288
BshFI	GGCC	2 cut(s)	44, 161
BslI	CCNNNNNNNGG	1 cut(s)	106
BsmAI	GTCTC	1 cut(s)	334
BsmI	GAATGC	1 cut(s)	261
BsnI	GGCC	2 cut(s)	44, 161
Bsp143I	GATC	4 cut(s)	31, 166, 181, 211
BspANI	GGCC	2 cut(s)	44, 161
BspFNI	CGCG	1 cut(s)	288
BspMI	ACCTGC	1 cut(s)	210
BspPI	GGATC	3 cut(s)	174, 189, 206
BssECI	CCNNGG	2 cut(s)	162, 263
BssMI	GATC	4 cut(s)	31, 166, 181, 211
BssSI	CACGAG	1 cut(s)	49
BssT1I	CCWWGG	1 cut(s)	263
Bst2BI	CACGAG	1 cut(s)	49
Bst2UI	CCWGG	1 cut(s)	163
Bst6I	CTCTTC	1 cut(s)	33
BstDEI	CTNAG	1 cut(s)	344
BstF5I	GGATG	1 cut(s)	285
BstFNI	CGCG	1 cut(s)	288
BstHHI	GCGC	1 cut(s)	288
BstKTI	GATC	4 cut(s)	34, 169, 184, 214
BstMAI	GTCTC	1 cut(s)	334
BstMBI	GATC	4 cut(s)	31, 166, 181, 211
BstNI	CCWGG	1 cut(s)	163
BstSCI	CCNGG	1 cut(s)	161
BstUI	CGCG	1 cut(s)	288
BstV1I	GCAGC	1 cut(s)	73
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
BsuRI	GGCC	2 cut(s)	44, 161
BtrI	CACGTC	1 cut(s)	292
BtsCI	GGATG	1 cut(s)	285
BtsIMutI	CAGTG	1 cut(s)	207
BveI	ACCTGC	1 cut(s)	210
CfoI	GCGC	1 cut(s)	288
Csp6I	GTAC	1 cut(s)	150
CviAII	CATG	1 cut(s)	372
CviJI	RGCY	9 cut(s)	44, 57, 68, 161, 175, 197, 296, 348, 367
CviKI_1	RGCY	9 cut(s)	44, 57, 68, 161, 175, 197, 296, 348, 367
CviQI	GTAC	1 cut(s)	150
DdeI	CTNAG	1 cut(s)	344
DpnI	GATC	4 cut(s)	33, 168, 183, 213
DpnII	GATC	4 cut(s)	31, 166, 181, 211
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
Eco130I	CCWWGG	1 cut(s)	263
Eco57I	CTGAAG	1 cut(s)	123
EcoRII	CCWGG	1 cut(s)	161
EcoT14I	CCWWGG	1 cut(s)	263
ErhI	CCWWGG	1 cut(s)	263
FaeI	CATG	1 cut(s)	375
FaiI	YATR	6 cut(s)	156, 225, 236, 252, 310, 373
FalI	AAGNNNNNCTT	2 cut(s)	316, 348
FatI	CATG	1 cut(s)	371
FblI	GTMKAC	1 cut(s)	61
Fnu4HI	GCNGC	1 cut(s)	87
FokI	GGATG	1 cut(s)	292
Fsp4HI	GCNGC	1 cut(s)	87
GlaI	GCGC	1 cut(s)	287
GluI	GCNGC	1 cut(s)	87
HaeIII	GGCC	2 cut(s)	44, 161
HhaI	GCGC	1 cut(s)	288
Hin1II	CATG	1 cut(s)	375
Hin6I	GCGC	1 cut(s)	286
HinP1I	GCGC	1 cut(s)	286
HincII	GTYRAC	1 cut(s)	62
HindII	GTYRAC	1 cut(s)	62
HindIII	AAGCTT	1 cut(s)	346
HinfI	GANTC	3 cut(s)	4, 119, 189
Hpy166II	GTNNAC	1 cut(s)	62
Hpy188I	TCNGA	1 cut(s)	142
Hpy188III	TCNNGA	4 cut(s)	35, 49, 107, 170
Hpy8I	GTNNAC	1 cut(s)	62
Hpy99I	CGWCG	3 cut(s)	63, 66, 293
HpyAV	CCTTC	1 cut(s)	137
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	4 cut(s)	25, 94, 219, 259
HpyF3I	CTNAG	1 cut(s)	344
HpySE526I	ACGT	1 cut(s)	291
Hsp92II	CATG	1 cut(s)	375
HspAI	GCGC	1 cut(s)	286
Kzo9I	GATC	4 cut(s)	31, 166, 181, 211
LpnPI	CCDG	5 cut(s)	92, 148, 175, 205, 262
Lsp1109I	GCAGC	1 cut(s)	73
LweI	GCATC	2 cut(s)	273, 319
MaeII	ACGT	1 cut(s)	291
MaeIII	GTNAC	1 cut(s)	46
MalI	GATC	4 cut(s)	33, 168, 183, 213
MboI	GATC	4 cut(s)	31, 166, 181, 211
MboII	GAAGA	4 cut(s)	50, 122, 129, 176
MflI	RGATCY	1 cut(s)	181
MlyI	GAGTC	1 cut(s)	183
MnlI	CCTC	2 cut(s)	34, 109
MseI	TTAA	1 cut(s)	11
MspR9I	CCNGG	1 cut(s)	163
Mva1269I	GAATGC	1 cut(s)	261
MvaI	CCWGG	1 cut(s)	163
MvnI	CGCG	1 cut(s)	288
NdeII	GATC	4 cut(s)	31, 166, 181, 211
NlaIII	CATG	1 cut(s)	375
NmuCI	GTSAC	1 cut(s)	46
PctI	GAATGC	1 cut(s)	261
PfeI	GAWTC	2 cut(s)	4, 119
PflMI	CCANNNNNTGG	1 cut(s)	106
PkrI	GCNGC	1 cut(s)	88
PleI	GAGTC	1 cut(s)	183
PpsI	GAGTC	1 cut(s)	183
Psp6I	CCWGG	1 cut(s)	161
PspGI	CCWGG	1 cut(s)	161
PsuI	RGATCY	1 cut(s)	181
RsaI	GTAC	1 cut(s)	151
RsaNI	GTAC	1 cut(s)	150
SalI	GTCGAC	1 cut(s)	60
SaqAI	TTAA	1 cut(s)	11
SatI	GCNGC	1 cut(s)	87
Sau3AI	GATC	4 cut(s)	31, 166, 181, 211
SchI	GAGTC	1 cut(s)	183
ScrFI	CCNGG	1 cut(s)	163
SetI	ASST	9 cut(s)	148, 155, 177, 199, 224, 265, 294, 350, 369
SfaNI	GCATC	2 cut(s)	273, 319
SgrDI	CGTCGACG	1 cut(s)	60
StyD4I	CCNGG	1 cut(s)	161
StyI	CCWWGG	1 cut(s)	263
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	3 cut(s)	61, 169, 187
TfiI	GAWTC	2 cut(s)	4, 119
Tru1I	TTAA	1 cut(s)	11
Tru9I	TTAA	1 cut(s)	11
TscAI	CASTG	1 cut(s)	214
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	1 cut(s)	86
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	2 cut(s)	17, 240
TspGWI	ACGGA	1 cut(s)	204
TspRI	CASTG	1 cut(s)	214
Van91I	CCANNNNNTGG	1 cut(s)	106
XmiI	GTMKAC	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.