Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006273.1

Orthogroup ID

OG0016469

Physical Location & Seq

Genomic Coordinates Reverse (-)

83023 .. 83382

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006273.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atgaatcgtttgatgaaatggttgcagaaagatcaagaaaaggccgtcacaagaagtcgtcgacgagccttgatgatgtctgccgctgccttgcaaatccaaactctggaagatgtggattcacaatggggtggttcttcagaaggtcgtacctataaggccagggatcgagagttgatggatcttcgactcaaagctcaatacttcacggatccgtgcaggtatgaatcaaacatatttcgtaggcgatatagaatacaaccttgggtctttgacaagatgatgcgcgacgtggccaactacgacccatattttgttcaaacaagagatgcttgtgggagactaagcttatccacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_tran

Protein Analysis

119

Amino Acids

14.29

Weight (kDa)

9.87

Isoelectric Point (pI)

61.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016469)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001144.1_g000027 Rmu_sc0001144.1_g000028 Rmu_sc0001348.1_g000015 Rmu_sc0001651.1_g000018 Rmu_sc0001873.1_g000005 Rmu_sc0002539.1_g000055 Rmu_sc0002902.1_g000047 Rmu_sc0003317.1_g000012 Rmu_sc0003927.1_g000004 Rmu_sc0004088.1_g000008 Rmu_sc0004324.1_g000007 Rmu_sc0006273.1_g000016 Rmu_sc0007034.1_g000016 Rmu_sc0007239.1_g000009 Rmu_sc0007314.1_g000008

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	210
AccB7I	CCANNNNNTGG	1 cut(s)	106
AccI	GTMKAC	1 cut(s)	61
AccII	CGCG	1 cut(s)	288
AciI	CCGC	1 cut(s)	84
AclWI	GGATC	4 cut(s)	174, 189, 206, 219
AcoI	YGGCCR	1 cut(s)	294
AcuI	CTGAAG	1 cut(s)	123
AfaI	GTAC	1 cut(s)	151
AfiI	CCNNNNNNNGG	1 cut(s)	106
AgsI	TTSAA	1 cut(s)	320
AjiI	CACGTC	1 cut(s)	292
AjnI	CCWGG	1 cut(s)	161
AjuI	GAANNNNNNNTTGG	2 cut(s)	247, 279
AluBI	AGCT	2 cut(s)	197, 348
AluI	AGCT	2 cut(s)	197, 348
Alw26I	GTCTC	1 cut(s)	334
AlwI	GGATC	4 cut(s)	174, 189, 206, 219
AoxI	GGCC	3 cut(s)	42, 159, 294
ApeKI	GCWGC	1 cut(s)	86
ArsI	GACNNNNNNTTYG	2 cut(s)	296, 328
AspLEI	GCGC	1 cut(s)	288
BalI	TGGCCA	1 cut(s)	296
BamHI	GGATCC	1 cut(s)	211
BbvI	GCAGC	1 cut(s)	73
BccI	CCATC	1 cut(s)	172
BceAI	ACGGC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	163
BcoDI	GTCTC	1 cut(s)	334
BfuAI	ACCTGC	1 cut(s)	210
BisI	GCNGC	2 cut(s)	84, 87
BlsI	GCNGC	2 cut(s)	85, 88
Bme1390I	CCNGG	1 cut(s)	163
BmgBI	CACGTC	1 cut(s)	292
BmiI	GGNNCC	1 cut(s)	213
BmrFI	CCNGG	1 cut(s)	163
BmsI	GCATC	2 cut(s)	273, 319
BsaJI	CCNNGG	2 cut(s)	162, 263
Bsc4I	CCNNNNNNNGG	1 cut(s)	106
BseBI	CCWGG	1 cut(s)	163
BseDI	CCNNGG	2 cut(s)	162, 263
BseLI	CCNNNNNNNGG	1 cut(s)	106
BseXI	GCAGC	1 cut(s)	73
BsgI	GTGCAG	1 cut(s)	238
Bsh1236I	CGCG	1 cut(s)	288
BshFI	GGCC	3 cut(s)	44, 161, 296
BslI	CCNNNNNNNGG	1 cut(s)	106
BsmAI	GTCTC	1 cut(s)	334
BsnI	GGCC	3 cut(s)	44, 161, 296
Bsp143I	GATC	4 cut(s)	31, 166, 181, 211
BspACI	CCGC	1 cut(s)	84
BspANI	GGCC	3 cut(s)	44, 161, 296
BspFNI	CGCG	1 cut(s)	288
BspLI	GGNNCC	1 cut(s)	213
BspMI	ACCTGC	1 cut(s)	210
BspPI	GGATC	4 cut(s)	174, 189, 206, 219
BssECI	CCNNGG	2 cut(s)	162, 263
BssMI	GATC	4 cut(s)	31, 166, 181, 211
BssT1I	CCWWGG	1 cut(s)	263
Bst2UI	CCWGG	1 cut(s)	163
BstDEI	CTNAG	1 cut(s)	344
BstFNI	CGCG	1 cut(s)	288
BstHHI	GCGC	1 cut(s)	288
BstKTI	GATC	4 cut(s)	34, 169, 184, 214
BstMAI	GTCTC	1 cut(s)	334
BstMBI	GATC	4 cut(s)	31, 166, 181, 211
BstNI	CCWGG	1 cut(s)	163
BstSCI	CCNGG	1 cut(s)	161
BstUI	CGCG	1 cut(s)	288
BstV1I	GCAGC	1 cut(s)	73
BstX2I	RGATCY	2 cut(s)	181, 211
BstYI	RGATCY	2 cut(s)	181, 211
BsuRI	GGCC	3 cut(s)	44, 161, 296
BtrI	CACGTC	1 cut(s)	292
BveI	ACCTGC	1 cut(s)	210
CfoI	GCGC	1 cut(s)	288
Csp6I	GTAC	1 cut(s)	150
CviJI	RGCY	6 cut(s)	44, 68, 161, 197, 296, 348
CviKI_1	RGCY	6 cut(s)	44, 68, 161, 197, 296, 348
CviQI	GTAC	1 cut(s)	150
DdeI	CTNAG	1 cut(s)	344
DpnI	GATC	4 cut(s)	33, 168, 183, 213
DpnII	GATC	4 cut(s)	31, 166, 181, 211
EaeI	YGGCCR	1 cut(s)	294
Eco130I	CCWWGG	1 cut(s)	263
Eco57I	CTGAAG	1 cut(s)	123
EcoRII	CCWGG	1 cut(s)	161
EcoT14I	CCWWGG	1 cut(s)	263
ErhI	CCWWGG	1 cut(s)	263
FaiI	YATR	5 cut(s)	156, 225, 236, 252, 310
FalI	AAGNNNNNCTT	2 cut(s)	316, 348
FblI	GTMKAC	1 cut(s)	61
Fnu4HI	GCNGC	2 cut(s)	84, 87
Fsp4HI	GCNGC	2 cut(s)	84, 87
GlaI	GCGC	1 cut(s)	287
GluI	GCNGC	2 cut(s)	84, 87
HaeIII	GGCC	3 cut(s)	44, 161, 296
HhaI	GCGC	1 cut(s)	288
Hin6I	GCGC	1 cut(s)	286
HinP1I	GCGC	1 cut(s)	286
HincII	GTYRAC	1 cut(s)	62
HindII	GTYRAC	1 cut(s)	62
HindIII	AAGCTT	1 cut(s)	346
HinfI	GANTC	4 cut(s)	4, 119, 189, 227
Hpy166II	GTNNAC	1 cut(s)	62
Hpy188I	TCNGA	1 cut(s)	142
Hpy188III	TCNNGA	3 cut(s)	35, 107, 170
Hpy8I	GTNNAC	1 cut(s)	62
Hpy99I	CGWCG	3 cut(s)	63, 66, 293
HpyAV	CCTTC	1 cut(s)	137
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	3 cut(s)	25, 94, 219
HpyF3I	CTNAG	1 cut(s)	344
HpySE526I	ACGT	1 cut(s)	291
HspAI	GCGC	1 cut(s)	286
Kzo9I	GATC	4 cut(s)	31, 166, 181, 211
LpnPI	CCDG	4 cut(s)	92, 148, 175, 205
Lsp1109I	GCAGC	1 cut(s)	73
LweI	GCATC	2 cut(s)	273, 319
MaeII	ACGT	1 cut(s)	291
MaeIII	GTNAC	1 cut(s)	46
MalI	GATC	4 cut(s)	33, 168, 183, 213
MboI	GATC	4 cut(s)	31, 166, 181, 211
MboII	GAAGA	3 cut(s)	122, 129, 176
MflI	RGATCY	2 cut(s)	181, 211
MlsI	TGGCCA	1 cut(s)	296
MluNI	TGGCCA	1 cut(s)	296
MlyI	GAGTC	1 cut(s)	183
Mox20I	TGGCCA	1 cut(s)	296
MscI	TGGCCA	1 cut(s)	296
MseI	TTAA	1 cut(s)	358
Msp20I	TGGCCA	1 cut(s)	296
MspA1I	CMGCKG	1 cut(s)	86
MspR9I	CCNGG	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	163
MvnI	CGCG	1 cut(s)	288
NdeII	GATC	4 cut(s)	31, 166, 181, 211
NlaIV	GGNNCC	1 cut(s)	213
NmuCI	GTSAC	1 cut(s)	46
PfeI	GAWTC	3 cut(s)	4, 119, 227
PflMI	CCANNNNNTGG	1 cut(s)	106
PkrI	GCNGC	2 cut(s)	85, 88
PleI	GAGTC	1 cut(s)	183
PpsI	GAGTC	1 cut(s)	183
Psp6I	CCWGG	1 cut(s)	161
PspGI	CCWGG	1 cut(s)	161
PspN4I	GGNNCC	1 cut(s)	213
PsuI	RGATCY	2 cut(s)	181, 211
RsaI	GTAC	1 cut(s)	151
RsaNI	GTAC	1 cut(s)	150
SalI	GTCGAC	1 cut(s)	60
SaqAI	TTAA	1 cut(s)	358
SatI	GCNGC	2 cut(s)	84, 87
Sau3AI	GATC	4 cut(s)	31, 166, 181, 211
SchI	GAGTC	1 cut(s)	183
ScrFI	CCNGG	1 cut(s)	163
SetI	ASST	7 cut(s)	148, 155, 199, 224, 265, 294, 350
SfaNI	GCATC	2 cut(s)	273, 319
SgrDI	CGTCGACG	1 cut(s)	60
SsiI	CCGC	1 cut(s)	84
StyD4I	CCNGG	1 cut(s)	161
StyI	CCWWGG	1 cut(s)	263
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	3 cut(s)	61, 169, 187
TauI	GCSGC	1 cut(s)	86
TfiI	GAWTC	3 cut(s)	4, 119, 227
Tru1I	TTAA	1 cut(s)	358
Tru9I	TTAA	1 cut(s)	358
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	1 cut(s)	86
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	3 cut(s)	17, 29, 240
TspGWI	ACGGA	2 cut(s)	204, 224
Van91I	CCANNNNNTGG	1 cut(s)	106
XmiI	GTMKAC	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.