Rmu_sc0002902.1_g000047

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002902.1
OG0016469
Physical Location & Seq
Forward (+)
260306 .. 260791
486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002902.1_g000047.1.cds

Sequence Viewer

Length: 486 bp
atgaaccgtttgatgaaatggttgcagaaagatcaagaagagaccgtcacgagaaaccgtcgaagagtcatgatgatgtctgccgctgccttgcaaatccaaactctagaagatgaggattcacaatggggttgttcttcggaaagtcgtatctataaggccaaggatcgagagctaatggatcttcgattcaaagctcaatatttcacagatctgtgtaggtctgaaccaaatatatttcgtaggcgatataaaatgcaaccttgggtctttgacaggatgatgtgcgacgtggccaactacgatccatattttattcagagaagagatgctagtgggagagttggcttatccactgaacaaaaactgacatgcgccatgaggatgctcgcgtatggcatcacaactgacttctgcgatgattacctagatattgcgaagtccactgccattgagattttggagcacttcacaaaagcaatctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

161

Amino Acids

19.2

Weight (kDa)

8.26

Isoelectric Point (pI)

63.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 392
AciI CCGC 1 cut(s) 84
AclWI GGATC 3 cut(s) 174, 189, 299
AcoI YGGCCR 1 cut(s) 294
AgsI TTSAA 1 cut(s) 193
AjiI CACGTC 1 cut(s) 292
AluBI AGCT 2 cut(s) 175, 197
AluI AGCT 2 cut(s) 175, 197
Alw21I GWGCWC 1 cut(s) 468
Alw26I GTCTC 1 cut(s) 35
AlwI GGATC 3 cut(s) 174, 189, 299
AoxI GGCC 2 cut(s) 159, 294
ApeKI GCWGC 1 cut(s) 86
AspLEI GCGC 1 cut(s) 377
BalI TGGCCA 1 cut(s) 296
BauI CACGAG 1 cut(s) 49
Bbv12I GWGCWC 1 cut(s) 468
BbvI GCAGC 1 cut(s) 73
BcoDI GTCTC 1 cut(s) 35
BfaI CTAG 4 cut(s) 107, 333, 428, 484
BglII AGATCT 1 cut(s) 211
BisI GCNGC 2 cut(s) 84, 87
BlsI GCNGC 2 cut(s) 85, 88
BmgBI CACGTC 1 cut(s) 292
BmsI GCATC 3 cut(s) 319, 375, 408
BsaI GGTCTC 1 cut(s) 35
BsaJI CCNNGG 2 cut(s) 162, 263
BseDI CCNNGG 2 cut(s) 162, 263
BseGI GGATG 2 cut(s) 285, 390
BseXI GCAGC 1 cut(s) 73
Bsh1236I CGCG 1 cut(s) 392
BshFI GGCC 2 cut(s) 161, 296
BsiHKAI GWGCWC 1 cut(s) 468
BsmAI GTCTC 1 cut(s) 35
BsnI GGCC 2 cut(s) 161, 296
Bso31I GGTCTC 1 cut(s) 35
Bsp1286I GDGCHC 1 cut(s) 468
Bsp143I GATC 5 cut(s) 31, 166, 181, 211, 304
BspACI CCGC 1 cut(s) 84
BspANI GGCC 2 cut(s) 161, 296
BspFNI CGCG 1 cut(s) 392
BspHI TCATGA 1 cut(s) 69
BspPI GGATC 3 cut(s) 174, 189, 299
BspTNI GGTCTC 1 cut(s) 35
BssECI CCNNGG 2 cut(s) 162, 263
BssMI GATC 5 cut(s) 31, 166, 181, 211, 304
BssSI CACGAG 1 cut(s) 49
BssT1I CCWWGG 2 cut(s) 162, 263
Bst2BI CACGAG 1 cut(s) 49
Bst4CI ACNGT 3 cut(s) 8, 46, 59
Bst6I CTCTTC 3 cut(s) 33, 58, 319
BstC8I GCNNGC 1 cut(s) 390
BstF5I GGATG 2 cut(s) 285, 390
BstFNI CGCG 1 cut(s) 392
BstHHI GCGC 1 cut(s) 377
BstKTI GATC 5 cut(s) 34, 169, 184, 214, 307
BstMAI GTCTC 1 cut(s) 35
BstMBI GATC 5 cut(s) 31, 166, 181, 211, 304
BstNSI RCATGY 1 cut(s) 375
BstUI CGCG 1 cut(s) 392
BstV1I GCAGC 1 cut(s) 73
BstX2I RGATCY 2 cut(s) 181, 211
BstYI RGATCY 2 cut(s) 181, 211
BsuRI GGCC 2 cut(s) 161, 296
BtgZI GCGATG 1 cut(s) 432
BtrI CACGTC 1 cut(s) 292
BtsCI GGATG 2 cut(s) 285, 390
BtsI GCAGTG 1 cut(s) 444
BtsIMutI CAGTG 2 cut(s) 354, 444
Cac8I GCNNGC 1 cut(s) 390
CciI TCATGA 1 cut(s) 69
CfoI GCGC 1 cut(s) 377
CspCI CAANNNNNGTGG 2 cut(s) 433, 468
CviAII CATG 3 cut(s) 70, 372, 379
CviJI RGCY 5 cut(s) 161, 175, 197, 296, 348
CviKI_1 RGCY 5 cut(s) 161, 175, 197, 296, 348
DpnI GATC 5 cut(s) 33, 168, 183, 213, 306
DpnII GATC 5 cut(s) 31, 166, 181, 211, 304
EaeI YGGCCR 1 cut(s) 294
Eam1104I CTCTTC 3 cut(s) 33, 58, 319
EarI CTCTTC 3 cut(s) 33, 58, 319
Eco130I CCWWGG 2 cut(s) 162, 263
Eco31I GGTCTC 1 cut(s) 35
EcoT14I CCWWGG 2 cut(s) 162, 263
ErhI CCWWGG 2 cut(s) 162, 263
FaeI CATG 3 cut(s) 73, 375, 382
FaiI YATR 8 cut(s) 71, 156, 236, 252, 310, 373, 380, 396
FatI CATG 3 cut(s) 69, 371, 378
Fnu4HI GCNGC 2 cut(s) 84, 87
FokI GGATG 2 cut(s) 292, 397
Fsp4HI GCNGC 2 cut(s) 84, 87
FspBI CTAG 4 cut(s) 107, 333, 428, 484
GlaI GCGC 1 cut(s) 376
GluI GCNGC 2 cut(s) 84, 87
HaeIII GGCC 2 cut(s) 161, 296
HhaI GCGC 1 cut(s) 377
Hin1II CATG 3 cut(s) 73, 375, 382
Hin6I GCGC 1 cut(s) 375
HinP1I GCGC 1 cut(s) 375
HinfI GANTC 3 cut(s) 66, 119, 189
Hpy166II GTNNAC 1 cut(s) 444
Hpy188I TCNGA 3 cut(s) 142, 226, 321
Hpy188III TCNNGA 5 cut(s) 35, 49, 70, 107, 170
Hpy8I GTNNAC 1 cut(s) 444
Hpy99I CGWCG 2 cut(s) 63, 293
HpyCH4III ACNGT 3 cut(s) 8, 46, 59
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 3 cut(s) 25, 94, 259
HpySE526I ACGT 1 cut(s) 291
Hsp92II CATG 3 cut(s) 73, 375, 382
HspAI GCGC 1 cut(s) 375
Kzo9I GATC 5 cut(s) 31, 166, 181, 211, 304
LmnI GCTCC 1 cut(s) 463
LpnPI CCDG 1 cut(s) 262
Lsp1109I GCAGC 1 cut(s) 73
LweI GCATC 3 cut(s) 319, 375, 408
MaeI CTAG 4 cut(s) 107, 333, 428, 484
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 1 cut(s) 46
MalI GATC 5 cut(s) 33, 168, 183, 213, 306
MboI GATC 5 cut(s) 31, 166, 181, 211, 304
MboII GAAGA 6 cut(s) 50, 75, 122, 129, 176, 336
MflI RGATCY 2 cut(s) 181, 211
MhlI GDGCHC 1 cut(s) 468
MlsI TGGCCA 1 cut(s) 296
MluNI TGGCCA 1 cut(s) 296
MlyI GAGTC 1 cut(s) 75
MnlI CCTC 2 cut(s) 109, 375
Mox20I TGGCCA 1 cut(s) 296
MscI TGGCCA 1 cut(s) 296
MslI CAYNNNNRTG 2 cut(s) 74, 383
Msp20I TGGCCA 1 cut(s) 296
MspA1I CMGCKG 1 cut(s) 86
MvnI CGCG 1 cut(s) 392
NdeII GATC 5 cut(s) 31, 166, 181, 211, 304
NlaIII CATG 3 cut(s) 73, 375, 382
NmuCI GTSAC 1 cut(s) 46
NspI RCATGY 1 cut(s) 375
PagI TCATGA 1 cut(s) 69
PfeI GAWTC 2 cut(s) 119, 189
PkrI GCNGC 2 cut(s) 85, 88
PleI GAGTC 1 cut(s) 74
PpsI GAGTC 1 cut(s) 74
PsuI RGATCY 2 cut(s) 181, 211
RseI CAYNNNNRTG 2 cut(s) 74, 383
SatI GCNGC 2 cut(s) 84, 87
Sau3AI GATC 5 cut(s) 31, 166, 181, 211, 304
SchI GAGTC 1 cut(s) 75
SduI GDGCHC 1 cut(s) 468
SetI ASST 6 cut(s) 177, 199, 224, 265, 294, 429
SfaNI GCATC 3 cut(s) 319, 375, 408
SmiMI CAYNNNNRTG 2 cut(s) 74, 383
SsiI CCGC 1 cut(s) 84
SspI AATATT 1 cut(s) 203
SspMI CTAG 4 cut(s) 107, 333, 428, 484
StyI CCWWGG 2 cut(s) 162, 263
TaaI ACNGT 3 cut(s) 8, 46, 59
TaiI ACGT 1 cut(s) 294
TaqI TCGA 3 cut(s) 61, 169, 187
TauI GCSGC 1 cut(s) 86
TfiI GAWTC 2 cut(s) 119, 189
TscAI CASTG 2 cut(s) 361, 451
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 1 cut(s) 86
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 2 cut(s) 17, 29
TspRI CASTG 2 cut(s) 361, 451
XbaI TCTAGA 1 cut(s) 106
XceI RCATGY 1 cut(s) 375
XcmI CCANNNNNNNNNTGG 1 cut(s) 457
XspI CTAG 4 cut(s) 107, 333, 428, 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.