Rmu_sc0007239.1_g000009

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007239.1
OG0016469
Physical Location & Seq
Forward (+)
51463 .. 51822
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007239.1_g000009.1.cds

Sequence Viewer

Length: 360 bp
atgaatcgtttgacgaaatggttgcagaaagatcaagaagaggccgtcacgagaagccgccgacgaaacttgatgatgtctgccgctgccttgcgaatccaaactctggaagatgaggattcacaatggggtggttcttcagaaggtcgtacctataaggccagggatcgagagctgatggatcttcgactcaaagttcaatacttcactgattcgtgcaggtatgaaccaaacgtatttcgtaggcgatatagaatgcaacctcacgtctttgacaggatgatgcgcgacctggccaactacgacccatattttgttcaaacaagatatgcttgtgggagactaagcttatccacttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

119

Amino Acids

14.43

Weight (kDa)

9.79

Isoelectric Point (pI)

67.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 210
AccB7I CCANNNNNTGG 1 cut(s) 106
AccII CGCG 1 cut(s) 288
AciI CCGC 2 cut(s) 58, 84
AclWI GGATC 2 cut(s) 174, 189
AcoI YGGCCR 1 cut(s) 294
AcuI CTGAAG 1 cut(s) 123
AfaI GTAC 1 cut(s) 151
AfiI CCNNNNNNNGG 1 cut(s) 106
AgsI TTSAA 2 cut(s) 200, 320
AjiI CACGTC 1 cut(s) 268
AjnI CCWGG 2 cut(s) 161, 291
AluBI AGCT 2 cut(s) 175, 348
AluI AGCT 2 cut(s) 175, 348
Alw26I GTCTC 1 cut(s) 334
AlwI GGATC 2 cut(s) 174, 189
AoxI GGCC 3 cut(s) 42, 159, 294
ApeKI GCWGC 1 cut(s) 86
ArsI GACNNNNNNTTYG 2 cut(s) 296, 328
AspLEI GCGC 1 cut(s) 288
BalI TGGCCA 1 cut(s) 296
BauI CACGAG 1 cut(s) 49
BbvI GCAGC 1 cut(s) 73
BccI CCATC 1 cut(s) 172
BceAI ACGGC 1 cut(s) 29
BcgI CGANNNNNNTGC 2 cut(s) 4, 38
BciT130I CCWGG 2 cut(s) 163, 293
BcoDI GTCTC 1 cut(s) 334
BfuAI ACCTGC 1 cut(s) 210
BisI GCNGC 3 cut(s) 58, 84, 87
BlsI GCNGC 3 cut(s) 59, 85, 88
Bme1390I CCNGG 2 cut(s) 163, 293
BmgBI CACGTC 1 cut(s) 268
BmrFI CCNGG 2 cut(s) 163, 293
BmsI GCATC 1 cut(s) 273
BsaJI CCNNGG 1 cut(s) 162
Bsc4I CCNNNNNNNGG 1 cut(s) 106
BseBI CCWGG 2 cut(s) 163, 293
BseDI CCNNGG 1 cut(s) 162
BseGI GGATG 1 cut(s) 285
BseLI CCNNNNNNNGG 1 cut(s) 106
BseXI GCAGC 1 cut(s) 73
BsgI GTGCAG 1 cut(s) 238
Bsh1236I CGCG 1 cut(s) 288
BshFI GGCC 3 cut(s) 44, 161, 296
BslI CCNNNNNNNGG 1 cut(s) 106
BsmAI GTCTC 1 cut(s) 334
BsmI GAATGC 1 cut(s) 261
BsnI GGCC 3 cut(s) 44, 161, 296
Bsp143I GATC 3 cut(s) 31, 166, 181
BspACI CCGC 2 cut(s) 58, 84
BspANI GGCC 3 cut(s) 44, 161, 296
BspFNI CGCG 1 cut(s) 288
BspMI ACCTGC 1 cut(s) 210
BspPI GGATC 2 cut(s) 174, 189
BssECI CCNNGG 1 cut(s) 162
BssMI GATC 3 cut(s) 31, 166, 181
BssSI CACGAG 1 cut(s) 49
Bst2BI CACGAG 1 cut(s) 49
Bst2UI CCWGG 2 cut(s) 163, 293
Bst6I CTCTTC 1 cut(s) 33
BstDEI CTNAG 1 cut(s) 344
BstF5I GGATG 1 cut(s) 285
BstFNI CGCG 1 cut(s) 288
BstHHI GCGC 1 cut(s) 288
BstKTI GATC 3 cut(s) 34, 169, 184
BstMAI GTCTC 1 cut(s) 334
BstMBI GATC 3 cut(s) 31, 166, 181
BstNI CCWGG 2 cut(s) 163, 293
BstSCI CCNGG 2 cut(s) 161, 291
BstUI CGCG 1 cut(s) 288
BstV1I GCAGC 1 cut(s) 73
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
BsuRI GGCC 3 cut(s) 44, 161, 296
BtrI CACGTC 1 cut(s) 268
BtsCI GGATG 1 cut(s) 285
BtsIMutI CAGTG 1 cut(s) 207
BveI ACCTGC 1 cut(s) 210
CfoI GCGC 1 cut(s) 288
Csp6I GTAC 1 cut(s) 150
CviJI RGCY 6 cut(s) 44, 57, 161, 175, 296, 348
CviKI_1 RGCY 6 cut(s) 44, 57, 161, 175, 296, 348
CviQI GTAC 1 cut(s) 150
DdeI CTNAG 1 cut(s) 344
DpnI GATC 3 cut(s) 33, 168, 183
DpnII GATC 3 cut(s) 31, 166, 181
EaeI YGGCCR 1 cut(s) 294
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Eco57I CTGAAG 1 cut(s) 123
EcoRII CCWGG 2 cut(s) 161, 291
FaiI YATR 5 cut(s) 156, 225, 252, 310, 330
FalI AAGNNNNNCTT 2 cut(s) 316, 348
Fnu4HI GCNGC 3 cut(s) 58, 84, 87
FokI GGATG 1 cut(s) 292
Fsp4HI GCNGC 3 cut(s) 58, 84, 87
GlaI GCGC 1 cut(s) 287
GluI GCNGC 3 cut(s) 58, 84, 87
HaeIII GGCC 3 cut(s) 44, 161, 296
HhaI GCGC 1 cut(s) 288
Hin6I GCGC 1 cut(s) 286
HinP1I GCGC 1 cut(s) 286
HindIII AAGCTT 1 cut(s) 346
HinfI GANTC 5 cut(s) 4, 96, 119, 189, 212
Hpy188I TCNGA 1 cut(s) 142
Hpy188III TCNNGA 4 cut(s) 35, 49, 107, 170
Hpy99I CGWCG 1 cut(s) 66
HpyAV CCTTC 1 cut(s) 137
HpyCH4IV ACGT 2 cut(s) 234, 267
HpyCH4V TGCA 3 cut(s) 25, 219, 259
HpyF3I CTNAG 1 cut(s) 344
HpySE526I ACGT 2 cut(s) 234, 267
HspAI GCGC 1 cut(s) 286
Kzo9I GATC 3 cut(s) 31, 166, 181
LpnPI CCDG 7 cut(s) 92, 148, 175, 205, 262, 278, 305
Lsp1109I GCAGC 1 cut(s) 73
LweI GCATC 1 cut(s) 273
MaeII ACGT 2 cut(s) 234, 267
MaeIII GTNAC 1 cut(s) 46
MalI GATC 3 cut(s) 33, 168, 183
MboI GATC 3 cut(s) 31, 166, 181
MboII GAAGA 4 cut(s) 50, 122, 129, 176
MflI RGATCY 1 cut(s) 181
MlsI TGGCCA 1 cut(s) 296
MluNI TGGCCA 1 cut(s) 296
MlyI GAGTC 1 cut(s) 183
MnlI CCTC 3 cut(s) 34, 109, 273
Mox20I TGGCCA 1 cut(s) 296
MscI TGGCCA 1 cut(s) 296
MseI TTAA 1 cut(s) 358
Msp20I TGGCCA 1 cut(s) 296
MspA1I CMGCKG 1 cut(s) 86
MspR9I CCNGG 2 cut(s) 163, 293
Mva1269I GAATGC 1 cut(s) 261
MvaI CCWGG 2 cut(s) 163, 293
MvnI CGCG 1 cut(s) 288
NdeII GATC 3 cut(s) 31, 166, 181
NmuCI GTSAC 1 cut(s) 46
PctI GAATGC 1 cut(s) 261
PfeI GAWTC 4 cut(s) 4, 96, 119, 212
PflMI CCANNNNNTGG 1 cut(s) 106
PkrI GCNGC 3 cut(s) 59, 85, 88
PleI GAGTC 1 cut(s) 183
PpsI GAGTC 1 cut(s) 183
Psp6I CCWGG 2 cut(s) 161, 291
PspGI CCWGG 2 cut(s) 161, 291
PsuI RGATCY 1 cut(s) 181
RsaI GTAC 1 cut(s) 151
RsaNI GTAC 1 cut(s) 150
SaqAI TTAA 1 cut(s) 358
SatI GCNGC 3 cut(s) 58, 84, 87
Sau3AI GATC 3 cut(s) 31, 166, 181
SchI GAGTC 1 cut(s) 183
ScrFI CCNGG 2 cut(s) 163, 293
SetI ASST 9 cut(s) 148, 155, 177, 224, 237, 265, 270, 294, 350
SfaNI GCATC 1 cut(s) 273
SsiI CCGC 2 cut(s) 58, 84
StyD4I CCNGG 2 cut(s) 161, 291
TaiI ACGT 2 cut(s) 237, 270
TaqI TCGA 2 cut(s) 169, 187
TauI GCSGC 2 cut(s) 60, 86
TfiI GAWTC 4 cut(s) 4, 96, 119, 212
Tru1I TTAA 1 cut(s) 358
Tru9I TTAA 1 cut(s) 358
TscAI CASTG 1 cut(s) 214
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 1 cut(s) 86
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 2 cut(s) 17, 240
TspRI CASTG 1 cut(s) 214
Van91I CCANNNNNTGG 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.