Rmu_sc0004088.1_g000008

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004088.1
OG0016469
Physical Location & Seq
Reverse (-)
27788 .. 28273
486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004088.1_g000008.1.cds

Sequence Viewer

Length: 486 bp
atgaatcgtttgacgaaatggttgcagaaagatcaagaagaggccgtcacgagaagtcgtcgacgagccttgatgatgtctgccgctgccttgcaaatccaaactctggaagatgaggattcacaatggggtggttcttcagaaggtcgtggctataaggccagggatcgagagttgatggatcttcgactcaaagctcaatacttcacggatccatgcaggtatgaaccaaacatatttcgtaggcgatatagaatgcaaccttgggtctttgacatgatgatgcgcgacgtggccaactacgacccatattttgttcaaacaagagatgtttgtgggagactaagcttatcaactgaacaaaagctgacatgcgccatgagaatgctcgcgtatggcatcacaactgatttctgcgatgattacctagatattgcgaagaccactgccattgagatttttgagcacttcacaaaagcaatctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

161

Amino Acids

19.12

Weight (kDa)

7.62

Isoelectric Point (pI)

50.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 210
AccB7I CCANNNNNTGG 1 cut(s) 106
AccI GTMKAC 1 cut(s) 61
AccII CGCG 2 cut(s) 288, 392
AciI CCGC 1 cut(s) 84
AclWI GGATC 4 cut(s) 174, 189, 206, 219
AcoI YGGCCR 1 cut(s) 294
AcuI CTGAAG 1 cut(s) 123
AfiI CCNNNNNNNGG 1 cut(s) 106
AgsI TTSAA 1 cut(s) 320
AjiI CACGTC 1 cut(s) 292
AjnI CCWGG 1 cut(s) 161
AjuI GAANNNNNNNTTGG 2 cut(s) 247, 279
AluBI AGCT 3 cut(s) 197, 348, 367
AluI AGCT 3 cut(s) 197, 348, 367
Alw21I GWGCWC 1 cut(s) 468
Alw26I GTCTC 1 cut(s) 334
AlwI GGATC 4 cut(s) 174, 189, 206, 219
AoxI GGCC 3 cut(s) 42, 159, 294
ApeKI GCWGC 1 cut(s) 86
ArsI GACNNNNNNTTYG 2 cut(s) 296, 328
AspLEI GCGC 2 cut(s) 288, 377
BalI TGGCCA 1 cut(s) 296
BamHI GGATCC 1 cut(s) 211
BauI CACGAG 1 cut(s) 49
BbsI GAAGAC 1 cut(s) 446
Bbv12I GWGCWC 1 cut(s) 468
BbvI GCAGC 1 cut(s) 73
BccI CCATC 1 cut(s) 172
BceAI ACGGC 1 cut(s) 29
BcgI CGANNNNNNTGC 2 cut(s) 4, 38
BciT130I CCWGG 1 cut(s) 163
BcoDI GTCTC 1 cut(s) 334
BfaI CTAG 2 cut(s) 428, 484
BfuAI ACCTGC 1 cut(s) 210
BisI GCNGC 2 cut(s) 84, 87
BlsI GCNGC 2 cut(s) 85, 88
Bme1390I CCNGG 1 cut(s) 163
BmgBI CACGTC 1 cut(s) 292
BmiI GGNNCC 1 cut(s) 213
BmrFI CCNGG 1 cut(s) 163
BmsI GCATC 2 cut(s) 273, 408
BpiI GAAGAC 1 cut(s) 446
BsaJI CCNNGG 2 cut(s) 162, 263
Bsc4I CCNNNNNNNGG 1 cut(s) 106
BseBI CCWGG 1 cut(s) 163
BseDI CCNNGG 2 cut(s) 162, 263
BseLI CCNNNNNNNGG 1 cut(s) 106
BseXI GCAGC 1 cut(s) 73
Bsh1236I CGCG 2 cut(s) 288, 392
BshFI GGCC 3 cut(s) 44, 161, 296
BsiHKAI GWGCWC 1 cut(s) 468
BslI CCNNNNNNNGG 1 cut(s) 106
BsmAI GTCTC 1 cut(s) 334
BsmI GAATGC 2 cut(s) 261, 390
BsnI GGCC 3 cut(s) 44, 161, 296
Bsp1286I GDGCHC 1 cut(s) 468
Bsp143I GATC 4 cut(s) 31, 166, 181, 211
BspACI CCGC 1 cut(s) 84
BspANI GGCC 3 cut(s) 44, 161, 296
BspFNI CGCG 2 cut(s) 288, 392
BspLI GGNNCC 1 cut(s) 213
BspMI ACCTGC 1 cut(s) 210
BspPI GGATC 4 cut(s) 174, 189, 206, 219
BssECI CCNNGG 2 cut(s) 162, 263
BssMI GATC 4 cut(s) 31, 166, 181, 211
BssSI CACGAG 1 cut(s) 49
BssT1I CCWWGG 1 cut(s) 263
Bst2BI CACGAG 1 cut(s) 49
Bst2UI CCWGG 1 cut(s) 163
Bst6I CTCTTC 1 cut(s) 33
BstC8I GCNNGC 1 cut(s) 390
BstDEI CTNAG 1 cut(s) 344
BstFNI CGCG 2 cut(s) 288, 392
BstHHI GCGC 2 cut(s) 288, 377
BstKTI GATC 4 cut(s) 34, 169, 184, 214
BstMAI GTCTC 1 cut(s) 334
BstMBI GATC 4 cut(s) 31, 166, 181, 211
BstNI CCWGG 1 cut(s) 163
BstNSI RCATGY 1 cut(s) 375
BstSCI CCNGG 1 cut(s) 161
BstUI CGCG 2 cut(s) 288, 392
BstV1I GCAGC 1 cut(s) 73
BstV2I GAAGAC 1 cut(s) 446
BstX2I RGATCY 2 cut(s) 181, 211
BstYI RGATCY 2 cut(s) 181, 211
BsuRI GGCC 3 cut(s) 44, 161, 296
BtgZI GCGATG 1 cut(s) 432
BtrI CACGTC 1 cut(s) 292
BtsI GCAGTG 1 cut(s) 444
BtsIMutI CAGTG 1 cut(s) 444
BveI ACCTGC 1 cut(s) 210
Cac8I GCNNGC 1 cut(s) 390
CfoI GCGC 2 cut(s) 288, 377
CspCI CAANNNNNGTGG 2 cut(s) 433, 468
CviAII CATG 4 cut(s) 216, 277, 372, 379
CviJI RGCY 8 cut(s) 44, 68, 153, 161, 197, 296, 348, 367
CviKI_1 RGCY 8 cut(s) 44, 68, 153, 161, 197, 296, 348, 367
DdeI CTNAG 1 cut(s) 344
DpnI GATC 4 cut(s) 33, 168, 183, 213
DpnII GATC 4 cut(s) 31, 166, 181, 211
EaeI YGGCCR 1 cut(s) 294
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Eco130I CCWWGG 1 cut(s) 263
Eco57I CTGAAG 1 cut(s) 123
EcoRII CCWGG 1 cut(s) 161
EcoT14I CCWWGG 1 cut(s) 263
ErhI CCWWGG 1 cut(s) 263
FaeI CATG 4 cut(s) 219, 280, 375, 382
FatI CATG 4 cut(s) 215, 276, 371, 378
FblI GTMKAC 1 cut(s) 61
Fnu4HI GCNGC 2 cut(s) 84, 87
Fsp4HI GCNGC 2 cut(s) 84, 87
FspBI CTAG 2 cut(s) 428, 484
GlaI GCGC 2 cut(s) 287, 376
GluI GCNGC 2 cut(s) 84, 87
HaeIII GGCC 3 cut(s) 44, 161, 296
HhaI GCGC 2 cut(s) 288, 377
Hin1II CATG 4 cut(s) 219, 280, 375, 382
Hin6I GCGC 2 cut(s) 286, 375
HinP1I GCGC 2 cut(s) 286, 375
HincII GTYRAC 1 cut(s) 62
HindII GTYRAC 1 cut(s) 62
HindIII AAGCTT 1 cut(s) 346
HinfI GANTC 3 cut(s) 4, 119, 189
Hpy166II GTNNAC 1 cut(s) 62
Hpy188I TCNGA 1 cut(s) 142
Hpy188III TCNNGA 4 cut(s) 35, 49, 107, 170
Hpy8I GTNNAC 1 cut(s) 62
Hpy99I CGWCG 3 cut(s) 63, 66, 293
HpyAV CCTTC 1 cut(s) 137
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 4 cut(s) 25, 94, 219, 259
HpyF3I CTNAG 1 cut(s) 344
HpySE526I ACGT 1 cut(s) 291
Hsp92II CATG 4 cut(s) 219, 280, 375, 382
HspAI GCGC 2 cut(s) 286, 375
Kzo9I GATC 4 cut(s) 31, 166, 181, 211
LpnPI CCDG 4 cut(s) 92, 148, 175, 205
Lsp1109I GCAGC 1 cut(s) 73
LweI GCATC 2 cut(s) 273, 408
MaeI CTAG 2 cut(s) 428, 484
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 1 cut(s) 46
MalI GATC 4 cut(s) 33, 168, 183, 213
MboI GATC 4 cut(s) 31, 166, 181, 211
MboII GAAGA 5 cut(s) 50, 122, 129, 176, 451
MflI RGATCY 2 cut(s) 181, 211
MhlI GDGCHC 1 cut(s) 468
MlsI TGGCCA 1 cut(s) 296
MluNI TGGCCA 1 cut(s) 296
MlyI GAGTC 1 cut(s) 183
MnlI CCTC 2 cut(s) 34, 109
Mox20I TGGCCA 1 cut(s) 296
MscI TGGCCA 1 cut(s) 296
MslI CAYNNNNRTG 2 cut(s) 281, 383
Msp20I TGGCCA 1 cut(s) 296
MspA1I CMGCKG 1 cut(s) 86
MspR9I CCNGG 1 cut(s) 163
Mva1269I GAATGC 2 cut(s) 261, 390
MvaI CCWGG 1 cut(s) 163
MvnI CGCG 2 cut(s) 288, 392
NdeII GATC 4 cut(s) 31, 166, 181, 211
NlaIII CATG 4 cut(s) 219, 280, 375, 382
NlaIV GGNNCC 1 cut(s) 213
NmuCI GTSAC 1 cut(s) 46
NspI RCATGY 1 cut(s) 375
PctI GAATGC 2 cut(s) 261, 390
PfeI GAWTC 2 cut(s) 4, 119
PflMI CCANNNNNTGG 1 cut(s) 106
PkrI GCNGC 2 cut(s) 85, 88
PleI GAGTC 1 cut(s) 183
PpsI GAGTC 1 cut(s) 183
Psp6I CCWGG 1 cut(s) 161
PspGI CCWGG 1 cut(s) 161
PspN4I GGNNCC 1 cut(s) 213
PsuI RGATCY 2 cut(s) 181, 211
RseI CAYNNNNRTG 2 cut(s) 281, 383
SalI GTCGAC 1 cut(s) 60
SatI GCNGC 2 cut(s) 84, 87
Sau3AI GATC 4 cut(s) 31, 166, 181, 211
SchI GAGTC 1 cut(s) 183
ScrFI CCNGG 1 cut(s) 163
SduI GDGCHC 1 cut(s) 468
SetI ASST 8 cut(s) 148, 199, 224, 265, 294, 350, 369, 429
SfaNI GCATC 2 cut(s) 273, 408
SgrDI CGTCGACG 1 cut(s) 60
SmiMI CAYNNNNRTG 2 cut(s) 281, 383
SsiI CCGC 1 cut(s) 84
SspMI CTAG 2 cut(s) 428, 484
StyD4I CCNGG 1 cut(s) 161
StyI CCWWGG 1 cut(s) 263
TaiI ACGT 1 cut(s) 294
TaqI TCGA 3 cut(s) 61, 169, 187
TauI GCSGC 1 cut(s) 86
TfiI GAWTC 2 cut(s) 4, 119
TscAI CASTG 1 cut(s) 451
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 1 cut(s) 86
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 2 cut(s) 17, 240
TspGWI ACGGA 1 cut(s) 224
TspRI CASTG 1 cut(s) 451
Van91I CCANNNNNTGG 1 cut(s) 106
XceI RCATGY 1 cut(s) 375
XmiI GTMKAC 1 cut(s) 61
XspI CTAG 2 cut(s) 428, 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.