Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003927.1

Orthogroup ID

OG0016469

Physical Location & Seq

Genomic Coordinates Forward (+)

13213 .. 13686

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003927.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

atgaaatggttgcagaaagatcaagaagagaccgtcacgagaaaccgtcgaagagtcatgatgatgtctgccgctgccttgcaaatccaaactctagaagatgaggattcacaatggggttgttctttggaaagtcgtatctataaggtcagggatagagagctaatggatcttcgattcaaagctcaatatttcacagatctgtgtaggtctgaaccaaatatatttcgtaggcgatatagaatgcaaccttgggtctttgacaggatgatgtgcgacgtggccaactacgatccatattttattcagagaagagatgctagtgggagagttggcttatccactgaacaaaaactgacatgcgccatgaggatgctcgcgtatggcatcacaactgacttctgcgatgattacctagatattgcgaagtccactgccattgagattttggagcacttcacaaaagcaatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_tran

Protein Analysis

157

Amino Acids

18.8

Weight (kDa)

7.59

Isoelectric Point (pI)

58.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016469)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001144.1_g000027 Rmu_sc0001144.1_g000028 Rmu_sc0001348.1_g000015 Rmu_sc0001651.1_g000018 Rmu_sc0001873.1_g000005 Rmu_sc0002539.1_g000055 Rmu_sc0002902.1_g000047 Rmu_sc0003317.1_g000012 Rmu_sc0003927.1_g000004 Rmu_sc0004088.1_g000008 Rmu_sc0004324.1_g000007 Rmu_sc0006273.1_g000016 Rmu_sc0007034.1_g000016 Rmu_sc0007239.1_g000009 Rmu_sc0007314.1_g000008

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	380
AciI	CCGC	1 cut(s)	72
AclWI	GGATC	2 cut(s)	177, 287
AcoI	YGGCCR	1 cut(s)	282
AgsI	TTSAA	1 cut(s)	181
AjiI	CACGTC	1 cut(s)	280
AjuI	GAANNNNNNNTTGG	2 cut(s)	235, 267
AluBI	AGCT	2 cut(s)	163, 185
AluI	AGCT	2 cut(s)	163, 185
Alw21I	GWGCWC	1 cut(s)	456
Alw26I	GTCTC	1 cut(s)	23
AlwI	GGATC	2 cut(s)	177, 287
AoxI	GGCC	1 cut(s)	282
ApeKI	GCWGC	1 cut(s)	74
AspLEI	GCGC	1 cut(s)	365
BalI	TGGCCA	1 cut(s)	284
BauI	CACGAG	1 cut(s)	37
Bbv12I	GWGCWC	1 cut(s)	456
BbvI	GCAGC	1 cut(s)	61
BcoDI	GTCTC	1 cut(s)	23
BfaI	CTAG	4 cut(s)	95, 321, 416, 472
BglII	AGATCT	1 cut(s)	199
BisI	GCNGC	2 cut(s)	72, 75
BlsI	GCNGC	2 cut(s)	73, 76
BmgBI	CACGTC	1 cut(s)	280
BmsI	GCATC	3 cut(s)	307, 363, 396
BsaI	GGTCTC	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	251
BseDI	CCNNGG	1 cut(s)	251
BseGI	GGATG	2 cut(s)	273, 378
BseXI	GCAGC	1 cut(s)	61
Bsh1236I	CGCG	1 cut(s)	380
BshFI	GGCC	1 cut(s)	284
BsiHKAI	GWGCWC	1 cut(s)	456
BsmAI	GTCTC	1 cut(s)	23
BsmI	GAATGC	1 cut(s)	249
BsnI	GGCC	1 cut(s)	284
Bso31I	GGTCTC	1 cut(s)	23
Bsp1286I	GDGCHC	1 cut(s)	456
Bsp143I	GATC	4 cut(s)	19, 169, 199, 292
BspACI	CCGC	1 cut(s)	72
BspANI	GGCC	1 cut(s)	284
BspFNI	CGCG	1 cut(s)	380
BspHI	TCATGA	1 cut(s)	57
BspPI	GGATC	2 cut(s)	177, 287
BspTNI	GGTCTC	1 cut(s)	23
BssECI	CCNNGG	1 cut(s)	251
BssMI	GATC	4 cut(s)	19, 169, 199, 292
BssSI	CACGAG	1 cut(s)	37
BssT1I	CCWWGG	1 cut(s)	251
Bst2BI	CACGAG	1 cut(s)	37
Bst4CI	ACNGT	2 cut(s)	34, 47
Bst6I	CTCTTC	3 cut(s)	21, 46, 307
BstC8I	GCNNGC	1 cut(s)	378
BstF5I	GGATG	2 cut(s)	273, 378
BstFNI	CGCG	1 cut(s)	380
BstHHI	GCGC	1 cut(s)	365
BstKTI	GATC	4 cut(s)	22, 172, 202, 295
BstMAI	GTCTC	1 cut(s)	23
BstMBI	GATC	4 cut(s)	19, 169, 199, 292
BstNSI	RCATGY	1 cut(s)	363
BstUI	CGCG	1 cut(s)	380
BstV1I	GCAGC	1 cut(s)	61
BstX2I	RGATCY	2 cut(s)	169, 199
BstYI	RGATCY	2 cut(s)	169, 199
BsuRI	GGCC	1 cut(s)	284
BtgZI	GCGATG	1 cut(s)	420
BtrI	CACGTC	1 cut(s)	280
BtsCI	GGATG	2 cut(s)	273, 378
BtsI	GCAGTG	1 cut(s)	432
BtsIMutI	CAGTG	2 cut(s)	342, 432
Cac8I	GCNNGC	1 cut(s)	378
CciI	TCATGA	1 cut(s)	57
CfoI	GCGC	1 cut(s)	365
CspCI	CAANNNNNGTGG	2 cut(s)	421, 456
CviAII	CATG	3 cut(s)	58, 360, 367
CviJI	RGCY	4 cut(s)	163, 185, 284, 336
CviKI_1	RGCY	4 cut(s)	163, 185, 284, 336
DpnI	GATC	4 cut(s)	21, 171, 201, 294
DpnII	GATC	4 cut(s)	19, 169, 199, 292
EaeI	YGGCCR	1 cut(s)	282
Eam1104I	CTCTTC	3 cut(s)	21, 46, 307
EarI	CTCTTC	3 cut(s)	21, 46, 307
Eco130I	CCWWGG	1 cut(s)	251
Eco31I	GGTCTC	1 cut(s)	23
EcoT14I	CCWWGG	1 cut(s)	251
ErhI	CCWWGG	1 cut(s)	251
FaeI	CATG	3 cut(s)	61, 363, 370
FaiI	YATR	8 cut(s)	59, 144, 224, 240, 298, 361, 368, 384
FatI	CATG	3 cut(s)	57, 359, 366
Fnu4HI	GCNGC	2 cut(s)	72, 75
FokI	GGATG	2 cut(s)	280, 385
Fsp4HI	GCNGC	2 cut(s)	72, 75
FspBI	CTAG	4 cut(s)	95, 321, 416, 472
GlaI	GCGC	1 cut(s)	364
GluI	GCNGC	2 cut(s)	72, 75
HaeIII	GGCC	1 cut(s)	284
HhaI	GCGC	1 cut(s)	365
Hin1II	CATG	3 cut(s)	61, 363, 370
Hin6I	GCGC	1 cut(s)	363
HinP1I	GCGC	1 cut(s)	363
HinfI	GANTC	3 cut(s)	54, 107, 177
Hpy166II	GTNNAC	1 cut(s)	432
Hpy188I	TCNGA	2 cut(s)	214, 309
Hpy188III	TCNNGA	4 cut(s)	23, 37, 58, 95
Hpy8I	GTNNAC	1 cut(s)	432
Hpy99I	CGWCG	2 cut(s)	51, 281
HpyCH4III	ACNGT	2 cut(s)	34, 47
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	3 cut(s)	13, 82, 247
HpySE526I	ACGT	1 cut(s)	279
Hsp92II	CATG	3 cut(s)	61, 363, 370
HspAI	GCGC	1 cut(s)	363
Kzo9I	GATC	4 cut(s)	19, 169, 199, 292
LmnI	GCTCC	1 cut(s)	451
LpnPI	CCDG	2 cut(s)	136, 250
Lsp1109I	GCAGC	1 cut(s)	61
LweI	GCATC	3 cut(s)	307, 363, 396
MaeI	CTAG	4 cut(s)	95, 321, 416, 472
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	4 cut(s)	21, 171, 201, 294
MboI	GATC	4 cut(s)	19, 169, 199, 292
MboII	GAAGA	5 cut(s)	38, 63, 110, 164, 324
MflI	RGATCY	2 cut(s)	169, 199
MhlI	GDGCHC	1 cut(s)	456
MlsI	TGGCCA	1 cut(s)	284
MluNI	TGGCCA	1 cut(s)	284
MlyI	GAGTC	1 cut(s)	63
MnlI	CCTC	2 cut(s)	97, 363
Mox20I	TGGCCA	1 cut(s)	284
MscI	TGGCCA	1 cut(s)	284
MslI	CAYNNNNRTG	2 cut(s)	62, 371
Msp20I	TGGCCA	1 cut(s)	284
MspA1I	CMGCKG	1 cut(s)	74
Mva1269I	GAATGC	1 cut(s)	249
MvnI	CGCG	1 cut(s)	380
NdeII	GATC	4 cut(s)	19, 169, 199, 292
NlaIII	CATG	3 cut(s)	61, 363, 370
NmuCI	GTSAC	1 cut(s)	34
NspI	RCATGY	1 cut(s)	363
PagI	TCATGA	1 cut(s)	57
PctI	GAATGC	1 cut(s)	249
PfeI	GAWTC	2 cut(s)	107, 177
PkrI	GCNGC	2 cut(s)	73, 76
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
PsuI	RGATCY	2 cut(s)	169, 199
RseI	CAYNNNNRTG	2 cut(s)	62, 371
SatI	GCNGC	2 cut(s)	72, 75
Sau3AI	GATC	4 cut(s)	19, 169, 199, 292
SchI	GAGTC	1 cut(s)	63
SduI	GDGCHC	1 cut(s)	456
SetI	ASST	7 cut(s)	150, 165, 187, 212, 253, 282, 417
SfaNI	GCATC	3 cut(s)	307, 363, 396
SmiMI	CAYNNNNRTG	2 cut(s)	62, 371
SsiI	CCGC	1 cut(s)	72
SspI	AATATT	1 cut(s)	191
SspMI	CTAG	4 cut(s)	95, 321, 416, 472
StyI	CCWWGG	1 cut(s)	251
TaaI	ACNGT	2 cut(s)	34, 47
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	2 cut(s)	49, 175
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	2 cut(s)	107, 177
TscAI	CASTG	2 cut(s)	349, 439
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	1 cut(s)	74
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	349, 439
XbaI	TCTAGA	1 cut(s)	94
XceI	RCATGY	1 cut(s)	363
XcmI	CCANNNNNNNNNTGG	1 cut(s)	445
XspI	CTAG	4 cut(s)	95, 321, 416, 472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.