Rmu_sc0001873.1_g000005

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001873.1
OG0016469
Physical Location & Seq
Reverse (-)
21829 .. 22344
516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001873.1_g000005.1.cds

Sequence Viewer

Length: 516 bp
atgtatcgtttgacgaaatggttgcagaaagatcaagaagaggctgccacgagaagtcgtcgacgagccttgatgatgtctgccgctcccttgcaaatccaaactctggaagatgaggattcacaatggggtggttcttcagaaggtcgtacctataaggccagggatcgagagttgatggctcttcgactcaaagctcaatacttcaaggatctgtgcaggtatgaaccaaacatatttcgtaggtcatatagaatgcaaccttgggtctttgacaggatgatacgcgacgtggtcaactacgacccatattttgttcaaacaagagatgcttgtgggagactaagcttatccactgaacaaaagctgacatgcgccatgagaatgctcgcgtatggcatcagagctgatttctgcgatgattacctagatatggcgaagaccactgccattgagatttttgagcacttcacaaaagcaatctggaatgtgtaccatgagacttacctccgctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

171

Amino Acids

20.55

Weight (kDa)

8.87

Isoelectric Point (pI)

56.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 210
AccB7I CCANNNNNTGG 1 cut(s) 106
AccBSI CCGCTC 1 cut(s) 86
AccI GTMKAC 1 cut(s) 61
AccII CGCG 2 cut(s) 288, 392
AciI CCGC 2 cut(s) 84, 511
AclWI GGATC 2 cut(s) 174, 219
AcuI CTGAAG 1 cut(s) 123
AfaI GTAC 2 cut(s) 151, 494
AfiI CCNNNNNNNGG 2 cut(s) 106, 433
AgsI TTSAA 2 cut(s) 208, 320
AjiI CACGTC 1 cut(s) 292
AjnI CCWGG 1 cut(s) 161
AjuI GAANNNNNNNTTGG 2 cut(s) 247, 279
AluBI AGCT 4 cut(s) 197, 348, 367, 407
AluI AGCT 4 cut(s) 197, 348, 367, 407
Alw21I GWGCWC 1 cut(s) 468
Alw26I GTCTC 2 cut(s) 334, 494
AlwI GGATC 2 cut(s) 174, 219
AoxI GGCC 1 cut(s) 159
ApeKI GCWGC 1 cut(s) 44
ArsI GACNNNNNNTTYG 2 cut(s) 296, 328
AspLEI GCGC 1 cut(s) 377
BauI CACGAG 1 cut(s) 49
BbsI GAAGAC 1 cut(s) 446
Bbv12I GWGCWC 1 cut(s) 468
BbvI GCAGC 1 cut(s) 31
BccI CCATC 1 cut(s) 172
BcgI CGANNNNNNTGC 2 cut(s) 4, 38
BciT130I CCWGG 1 cut(s) 163
BcoDI GTCTC 2 cut(s) 334, 494
BfaI CTAG 1 cut(s) 428
BfuAI ACCTGC 1 cut(s) 210
BisI GCNGC 2 cut(s) 45, 84
BlsI GCNGC 2 cut(s) 46, 85
Bme1390I CCNGG 1 cut(s) 163
BmgBI CACGTC 1 cut(s) 292
BmrFI CCNGG 1 cut(s) 163
BmsI GCATC 2 cut(s) 319, 408
BpiI GAAGAC 1 cut(s) 446
BsaJI CCNNGG 2 cut(s) 162, 263
Bsc4I CCNNNNNNNGG 2 cut(s) 106, 433
BseBI CCWGG 1 cut(s) 163
BseDI CCNNGG 2 cut(s) 162, 263
BseGI GGATG 1 cut(s) 285
BseLI CCNNNNNNNGG 2 cut(s) 106, 433
BseXI GCAGC 1 cut(s) 31
BsgI GTGCAG 1 cut(s) 238
Bsh1236I CGCG 2 cut(s) 288, 392
BshFI GGCC 1 cut(s) 161
BsiHKAI GWGCWC 1 cut(s) 468
BslI CCNNNNNNNGG 2 cut(s) 106, 433
BsmAI GTCTC 2 cut(s) 334, 494
BsmI GAATGC 2 cut(s) 261, 390
BsnI GGCC 1 cut(s) 161
Bsp1286I GDGCHC 1 cut(s) 468
Bsp143I GATC 3 cut(s) 31, 166, 211
BspACI CCGC 2 cut(s) 84, 511
BspANI GGCC 1 cut(s) 161
BspFNI CGCG 2 cut(s) 288, 392
BspMI ACCTGC 1 cut(s) 210
BspPI GGATC 2 cut(s) 174, 219
BspQI GCTCTTC 1 cut(s) 189
BsrBI CCGCTC 1 cut(s) 86
BssECI CCNNGG 2 cut(s) 162, 263
BssMI GATC 3 cut(s) 31, 166, 211
BssSI CACGAG 1 cut(s) 49
BssT1I CCWWGG 1 cut(s) 263
Bst2BI CACGAG 1 cut(s) 49
Bst2UI CCWGG 1 cut(s) 163
Bst6I CTCTTC 2 cut(s) 33, 189
BstC8I GCNNGC 1 cut(s) 390
BstDEI CTNAG 1 cut(s) 344
BstF5I GGATG 1 cut(s) 285
BstFNI CGCG 2 cut(s) 288, 392
BstHHI GCGC 1 cut(s) 377
BstKTI GATC 3 cut(s) 34, 169, 214
BstMAI GTCTC 2 cut(s) 334, 494
BstMBI GATC 3 cut(s) 31, 166, 211
BstNI CCWGG 1 cut(s) 163
BstNSI RCATGY 1 cut(s) 375
BstSCI CCNGG 1 cut(s) 161
BstUI CGCG 2 cut(s) 288, 392
BstV1I GCAGC 1 cut(s) 31
BstV2I GAAGAC 1 cut(s) 446
BstX2I RGATCY 1 cut(s) 211
BstYI RGATCY 1 cut(s) 211
BsuRI GGCC 1 cut(s) 161
BtgZI GCGATG 1 cut(s) 432
BtrI CACGTC 1 cut(s) 292
BtsCI GGATG 1 cut(s) 285
BtsI GCAGTG 1 cut(s) 444
BtsIMutI CAGTG 2 cut(s) 354, 444
BveI ACCTGC 1 cut(s) 210
Cac8I GCNNGC 1 cut(s) 390
CfoI GCGC 1 cut(s) 377
Csp6I GTAC 2 cut(s) 150, 493
CspCI CAANNNNNGTGG 2 cut(s) 433, 468
CviAII CATG 3 cut(s) 372, 379, 497
CviJI RGCY 8 cut(s) 44, 68, 161, 182, 197, 348, 367, 407
CviKI_1 RGCY 8 cut(s) 44, 68, 161, 182, 197, 348, 367, 407
CviQI GTAC 2 cut(s) 150, 493
DdeI CTNAG 1 cut(s) 344
DpnI GATC 3 cut(s) 33, 168, 213
DpnII GATC 3 cut(s) 31, 166, 211
Eam1104I CTCTTC 2 cut(s) 33, 189
EarI CTCTTC 2 cut(s) 33, 189
Eco130I CCWWGG 1 cut(s) 263
Eco57I CTGAAG 1 cut(s) 123
EcoRII CCWGG 1 cut(s) 161
EcoT14I CCWWGG 1 cut(s) 263
ErhI CCWWGG 1 cut(s) 263
FaeI CATG 3 cut(s) 375, 382, 500
FalI AAGNNNNNCTT 2 cut(s) 316, 348
FatI CATG 3 cut(s) 371, 378, 496
FblI GTMKAC 1 cut(s) 61
Fnu4HI GCNGC 2 cut(s) 45, 84
FokI GGATG 1 cut(s) 292
Fsp4HI GCNGC 2 cut(s) 45, 84
FspBI CTAG 1 cut(s) 428
GlaI GCGC 1 cut(s) 376
GluI GCNGC 2 cut(s) 45, 84
HaeIII GGCC 1 cut(s) 161
HhaI GCGC 1 cut(s) 377
Hin1II CATG 3 cut(s) 375, 382, 500
Hin6I GCGC 1 cut(s) 375
HinP1I GCGC 1 cut(s) 375
HincII GTYRAC 2 cut(s) 62, 298
HindII GTYRAC 2 cut(s) 62, 298
HindIII AAGCTT 1 cut(s) 346
HinfI GANTC 2 cut(s) 119, 189
Hpy166II GTNNAC 3 cut(s) 62, 298, 493
Hpy188I TCNGA 2 cut(s) 142, 404
Hpy188III TCNNGA 4 cut(s) 35, 107, 170, 484
Hpy8I GTNNAC 3 cut(s) 62, 298, 493
Hpy99I CGWCG 3 cut(s) 63, 66, 293
HpyAV CCTTC 1 cut(s) 137
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 4 cut(s) 25, 94, 219, 259
HpyF3I CTNAG 1 cut(s) 344
HpySE526I ACGT 1 cut(s) 291
Hsp92II CATG 3 cut(s) 375, 382, 500
HspAI GCGC 1 cut(s) 375
Kzo9I GATC 3 cut(s) 31, 166, 211
LguI GCTCTTC 1 cut(s) 189
LmnI GCTCC 1 cut(s) 91
LpnPI CCDG 6 cut(s) 92, 148, 175, 205, 262, 469
Lsp1109I GCAGC 1 cut(s) 31
LweI GCATC 2 cut(s) 319, 408
MaeI CTAG 1 cut(s) 428
MaeII ACGT 1 cut(s) 291
MalI GATC 3 cut(s) 33, 168, 213
MbiI CCGCTC 1 cut(s) 86
MboI GATC 3 cut(s) 31, 166, 211
MboII GAAGA 5 cut(s) 50, 122, 129, 176, 451
MflI RGATCY 1 cut(s) 211
MhlI GDGCHC 1 cut(s) 468
MlyI GAGTC 1 cut(s) 183
MnlI CCTC 2 cut(s) 34, 109
MslI CAYNNNNRTG 1 cut(s) 383
MspA1I CMGCKG 1 cut(s) 513
MspR9I CCNGG 1 cut(s) 163
Mva1269I GAATGC 2 cut(s) 261, 390
MvaI CCWGG 1 cut(s) 163
MvnI CGCG 2 cut(s) 288, 392
NdeII GATC 3 cut(s) 31, 166, 211
NlaIII CATG 3 cut(s) 375, 382, 500
NspI RCATGY 1 cut(s) 375
PciSI GCTCTTC 1 cut(s) 189
PctI GAATGC 2 cut(s) 261, 390
PfeI GAWTC 1 cut(s) 119
PflFI GACNNNGTC 1 cut(s) 293
PflMI CCANNNNNTGG 1 cut(s) 106
PkrI GCNGC 2 cut(s) 46, 85
PleI GAGTC 1 cut(s) 183
PpsI GAGTC 1 cut(s) 183
Psp6I CCWGG 1 cut(s) 161
PspGI CCWGG 1 cut(s) 161
PsuI RGATCY 1 cut(s) 211
PsyI GACNNNGTC 1 cut(s) 293
RsaI GTAC 2 cut(s) 151, 494
RsaNI GTAC 2 cut(s) 150, 493
RseI CAYNNNNRTG 1 cut(s) 383
SalI GTCGAC 1 cut(s) 60
SapI GCTCTTC 1 cut(s) 189
SatI GCNGC 2 cut(s) 45, 84
Sau3AI GATC 3 cut(s) 31, 166, 211
SchI GAGTC 1 cut(s) 183
ScrFI CCNGG 1 cut(s) 163
SduI GDGCHC 1 cut(s) 468
SfaNI GCATC 2 cut(s) 319, 408
SgrDI CGTCGACG 1 cut(s) 60
SmiMI CAYNNNNRTG 1 cut(s) 383
SsiI CCGC 2 cut(s) 84, 511
SspMI CTAG 1 cut(s) 428
StyD4I CCNGG 1 cut(s) 161
StyI CCWWGG 1 cut(s) 263
TaiI ACGT 1 cut(s) 294
TaqI TCGA 3 cut(s) 61, 169, 187
TauI GCSGC 1 cut(s) 86
TfiI GAWTC 1 cut(s) 119
TscAI CASTG 2 cut(s) 361, 451
TseI GCWGC 1 cut(s) 44
TspDTI ATGAA 1 cut(s) 240
TspRI CASTG 2 cut(s) 361, 451
Tth111I GACNNNGTC 1 cut(s) 293
Van91I CCANNNNNTGG 1 cut(s) 106
XceI RCATGY 1 cut(s) 375
XmiI GTMKAC 1 cut(s) 61
XspI CTAG 1 cut(s) 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.