Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007314.1

Orthogroup ID

OG0016469

Physical Location & Seq

Genomic Coordinates Forward (+)

26358 .. 27578

Gene Structure 1221 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007314.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

atgaatcgtttgacgaaatggttgcaaaaagatcaagaagagaccgtcacaagaagctgtcgaagagccttgatgatgtctattgctgccttgcaaatccaaactttggaaaatgaggattcacaatggggtggttcttcagaaggtcataactataaggctagggatcgagagctgatggatctttatctcaaagctcaatacttcacggatcagtgcaagtatgaaccaaacatatttcgtaggcgatatagaatgcaacctttggtctttgacaagatgatgtgcgacgtggccaactacgacccatattttgttcagacaagagatgcttgtgggagagtcaacttatccactgaacaaaaactgacatgcaccatgagaatgctcacgtatggcatcacagggattcccgggatggtcggtagccttgattgtatgcattggaaatggaaaaatggtctcatcggatgggcagggcagtatactggccacaaggggaaaacgacaatcatcttagaggcggtagcctcctatgatacttggatttggcatgccttctttggacttccagatgagcatgatgaagttgcagcagagccatttgatcctgatgatatcccaacaaaaccaaggaaagcagagatatatgccagaccagtattgacacagatgtttattgcaaaccgcaacaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_tran

Protein Analysis

232

Amino Acids

27.03

Weight (kDa)

6.95

Isoelectric Point (pI)

47.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016469)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001144.1_g000027 Rmu_sc0001144.1_g000028 Rmu_sc0001348.1_g000015 Rmu_sc0001651.1_g000018 Rmu_sc0001873.1_g000005 Rmu_sc0002539.1_g000055 Rmu_sc0002902.1_g000047 Rmu_sc0003317.1_g000012 Rmu_sc0003927.1_g000004 Rmu_sc0004088.1_g000008 Rmu_sc0004324.1_g000007 Rmu_sc0006273.1_g000016 Rmu_sc0007034.1_g000016 Rmu_sc0007239.1_g000009 Rmu_sc0007314.1_g000008

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	106
AccI	GTMKAC	1 cut(s)	485
AciI	CCGC	2 cut(s)	524, 688
AclWI	GGATC	4 cut(s)	174, 189, 219, 602
AcoI	YGGCCR	2 cut(s)	294, 490
AcuI	CTGAAG	1 cut(s)	123
AfiI	CCNNNNNNNGG	1 cut(s)	106
AjiI	CACGTC	1 cut(s)	292
AluBI	AGCT	3 cut(s)	57, 175, 197
AluI	AGCT	3 cut(s)	57, 175, 197
Alw26I	GTCTC	2 cut(s)	35, 467
AlwI	GGATC	4 cut(s)	174, 189, 219, 602
Ama87I	CYCGRG	1 cut(s)	413
AoxI	GGCC	2 cut(s)	294, 490
ApeKI	GCWGC	2 cut(s)	86, 593
ArsI	GACNNNNNNTTYG	2 cut(s)	296, 328
AsuC2I	CCSGG	2 cut(s)	414, 415
AvaI	CYCGRG	1 cut(s)	413
BalI	TGGCCA	2 cut(s)	296, 492
BbvI	GCAGC	2 cut(s)	73, 605
BccI	CCATC	3 cut(s)	172, 412, 465
BcgI	CGANNNNNNTGC	2 cut(s)	4, 38
BcnI	CCSGG	2 cut(s)	414, 415
BcoDI	GTCTC	2 cut(s)	35, 467
BfaI	CTAG	1 cut(s)	162
BisI	GCNGC	2 cut(s)	87, 594
BlsI	GCNGC	2 cut(s)	88, 595
Bme1390I	CCNGG	2 cut(s)	414, 415
BmeT110I	CYCGRG	1 cut(s)	413
BmgBI	CACGTC	1 cut(s)	292
BmrFI	CCNGG	2 cut(s)	414, 415
BmsI	GCATC	2 cut(s)	319, 408
BpuMI	CCSGG	2 cut(s)	414, 415
BsaAI	YACGTR	1 cut(s)	393
BsaBI	GATNNNNATC	1 cut(s)	186
BsaI	GGTCTC	2 cut(s)	35, 467
BsaJI	CCNNGG	2 cut(s)	413, 632
Bsc4I	CCNNNNNNNGG	1 cut(s)	106
Bse1I	ACTGG	2 cut(s)	493, 659
Bse8I	GATNNNNATC	1 cut(s)	186
BseDI	CCNNGG	2 cut(s)	413, 632
BseGI	GGATG	2 cut(s)	423, 476
BseJI	GATNNNNATC	1 cut(s)	186
BseLI	CCNNNNNNNGG	1 cut(s)	106
BseNI	ACTGG	2 cut(s)	493, 659
BseXI	GCAGC	2 cut(s)	73, 605
BshFI	GGCC	2 cut(s)	296, 492
BsiHKCI	CYCGRG	1 cut(s)	413
BsiSI	CCGG	1 cut(s)	414
BslI	CCNNNNNNNGG	1 cut(s)	106
BsmAI	GTCTC	2 cut(s)	35, 467
BsmI	GAATGC	2 cut(s)	261, 390
BsnI	GGCC	2 cut(s)	296, 492
Bso31I	GGTCTC	2 cut(s)	35, 467
BsoBI	CYCGRG	1 cut(s)	413
Bsp143I	GATC	5 cut(s)	31, 166, 181, 211, 607
BspACI	CCGC	2 cut(s)	524, 688
BspANI	GGCC	2 cut(s)	296, 492
BspPI	GGATC	4 cut(s)	174, 189, 219, 602
BspQI	GCTCTTC	1 cut(s)	58
BspTNI	GGTCTC	2 cut(s)	35, 467
BsrI	ACTGG	2 cut(s)	493, 659
BssECI	CCNNGG	2 cut(s)	413, 632
BssMI	GATC	5 cut(s)	31, 166, 181, 211, 607
BssNAI	GTATAC	1 cut(s)	486
BssT1I	CCWWGG	1 cut(s)	632
Bst1107I	GTATAC	1 cut(s)	486
Bst4CI	ACNGT	1 cut(s)	46
Bst6I	CTCTTC	2 cut(s)	33, 58
BstBAI	YACGTR	1 cut(s)	393
BstC8I	GCNNGC	1 cut(s)	555
BstDEI	CTNAG	1 cut(s)	517
BstF5I	GGATG	2 cut(s)	423, 476
BstKTI	GATC	5 cut(s)	34, 169, 184, 214, 610
BstMAI	GTCTC	2 cut(s)	35, 467
BstMBI	GATC	5 cut(s)	31, 166, 181, 211, 607
BstNSI	RCATGY	2 cut(s)	375, 557
BstSCI	CCNGG	2 cut(s)	412, 413
BstV1I	GCAGC	2 cut(s)	73, 605
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
BstZ17I	GTATAC	1 cut(s)	486
BsuRI	GGCC	2 cut(s)	296, 492
BtrI	CACGTC	1 cut(s)	292
BtsCI	GGATG	2 cut(s)	423, 476
BtsIMutI	CAGTG	2 cut(s)	221, 354
Cac8I	GCNNGC	1 cut(s)	555
Cfr9I	CCCGGG	1 cut(s)	413
CviAII	CATG	4 cut(s)	372, 379, 554, 581
DdeI	CTNAG	1 cut(s)	517
DpnI	GATC	5 cut(s)	33, 168, 183, 213, 609
DpnII	GATC	5 cut(s)	31, 166, 181, 211, 607
EaeI	YGGCCR	2 cut(s)	294, 490
Eam1104I	CTCTTC	2 cut(s)	33, 58
EarI	CTCTTC	2 cut(s)	33, 58
Eco130I	CCWWGG	1 cut(s)	632
Eco31I	GGTCTC	2 cut(s)	35, 467
Eco32I	GATATC	1 cut(s)	619
Eco57I	CTGAAG	1 cut(s)	123
Eco88I	CYCGRG	1 cut(s)	413
EcoRV	GATATC	1 cut(s)	619
EcoT14I	CCWWGG	1 cut(s)	632
EcoT22I	ATGCAT	1 cut(s)	444
ErhI	CCWWGG	1 cut(s)	632
FaeI	CATG	4 cut(s)	375, 382, 557, 584
FalI	AAGNNNNNCTT	2 cut(s)	316, 348
FatI	CATG	4 cut(s)	371, 378, 553, 580
FblI	GTMKAC	1 cut(s)	485
Fnu4HI	GCNGC	2 cut(s)	87, 594
FokI	GGATG	2 cut(s)	430, 483
Fsp4HI	GCNGC	2 cut(s)	87, 594
FspBI	CTAG	1 cut(s)	162
GluI	GCNGC	2 cut(s)	87, 594
HaeIII	GGCC	2 cut(s)	296, 492
HapII	CCGG	1 cut(s)	414
Hin1II	CATG	4 cut(s)	375, 382, 557, 584
HincII	GTYRAC	1 cut(s)	346
HindII	GTYRAC	1 cut(s)	346
HinfI	GANTC	4 cut(s)	4, 119, 342, 409
HpaII	CCGG	1 cut(s)	414
Hpy166II	GTNNAC	2 cut(s)	346, 486
Hpy188I	TCNGA	3 cut(s)	142, 321, 470
Hpy188III	TCNNGA	4 cut(s)	35, 170, 572, 611
Hpy8I	GTNNAC	2 cut(s)	346, 486
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	2 cut(s)	137, 568
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4IV	ACGT	2 cut(s)	291, 392
HpyCH4V	TGCA	8 cut(s)	25, 94, 219, 259, 375, 442, 593, 683
HpyF3I	CTNAG	1 cut(s)	517
HpySE526I	ACGT	2 cut(s)	291, 392
Hsp92II	CATG	4 cut(s)	375, 382, 557, 584
Kzo9I	GATC	5 cut(s)	31, 166, 181, 211, 607
LguI	GCTCTTC	1 cut(s)	58
LpnPI	CCDG	8 cut(s)	390, 427, 462, 474, 585, 624, 667, 672
Lsp1109I	GCAGC	2 cut(s)	73, 605
LweI	GCATC	2 cut(s)	319, 408
MaeI	CTAG	1 cut(s)	162
MaeII	ACGT	2 cut(s)	291, 392
MaeIII	GTNAC	1 cut(s)	46
MalI	GATC	5 cut(s)	33, 168, 183, 213, 609
MboI	GATC	5 cut(s)	31, 166, 181, 211, 607
MboII	GAAGA	3 cut(s)	50, 75, 129
MflI	RGATCY	1 cut(s)	181
MlsI	TGGCCA	2 cut(s)	296, 492
MluNI	TGGCCA	2 cut(s)	296, 492
MlyI	GAGTC	1 cut(s)	351
MnlI	CCTC	3 cut(s)	109, 514, 541
Mox20I	TGGCCA	2 cut(s)	296, 492
Mph1103I	ATGCAT	1 cut(s)	444
MscI	TGGCCA	2 cut(s)	296, 492
MslI	CAYNNNNRTG	1 cut(s)	383
Msp20I	TGGCCA	2 cut(s)	296, 492
MspI	CCGG	1 cut(s)	414
MspR9I	CCNGG	2 cut(s)	414, 415
Mva1269I	GAATGC	2 cut(s)	261, 390
NciI	CCSGG	2 cut(s)	414, 415
NdeII	GATC	5 cut(s)	31, 166, 181, 211, 607
NlaIII	CATG	4 cut(s)	375, 382, 557, 584
NmuCI	GTSAC	1 cut(s)	46
NsiI	ATGCAT	1 cut(s)	444
NspI	RCATGY	2 cut(s)	375, 557
PaeI	GCATGC	1 cut(s)	557
PciSI	GCTCTTC	1 cut(s)	58
PctI	GAATGC	2 cut(s)	261, 390
PfeI	GAWTC	3 cut(s)	4, 119, 409
PflMI	CCANNNNNTGG	1 cut(s)	106
PkrI	GCNGC	2 cut(s)	88, 595
PleI	GAGTC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	350
Ppu21I	YACGTR	1 cut(s)	393
PsuI	RGATCY	1 cut(s)	181
RseI	CAYNNNNRTG	1 cut(s)	383
SapI	GCTCTTC	1 cut(s)	58
SatI	GCNGC	2 cut(s)	87, 594
Sau3AI	GATC	5 cut(s)	31, 166, 181, 211, 607
SchI	GAGTC	1 cut(s)	351
ScrFI	CCNGG	2 cut(s)	414, 415
SetI	ASST	7 cut(s)	59, 148, 177, 199, 265, 294, 395
SfaNI	GCATC	2 cut(s)	319, 408
SmaI	CCCGGG	1 cut(s)	415
SmiMI	CAYNNNNRTG	1 cut(s)	383
SphI	GCATGC	1 cut(s)	557
SsiI	CCGC	2 cut(s)	524, 688
SspMI	CTAG	1 cut(s)	162
StyD4I	CCNGG	2 cut(s)	412, 413
StyI	CCWWGG	1 cut(s)	632
TaaI	ACNGT	1 cut(s)	46
TaiI	ACGT	2 cut(s)	294, 395
TaqI	TCGA	2 cut(s)	61, 169
TfiI	GAWTC	3 cut(s)	4, 119, 409
TscAI	CASTG	2 cut(s)	221, 361
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	2 cut(s)	86, 593
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	3 cut(s)	17, 240, 600
TspGWI	ACGGA	1 cut(s)	224
TspMI	CCCGGG	1 cut(s)	413
TspRI	CASTG	2 cut(s)	221, 361
Van91I	CCANNNNNTGG	1 cut(s)	106
XceI	RCATGY	2 cut(s)	375, 557
XmaI	CCCGGG	1 cut(s)	413
XmiI	GTMKAC	1 cut(s)	485
XspI	CTAG	1 cut(s)	162
Zsp2I	ATGCAT	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.