Rmu_sc0002539.1_g000055

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002539.1
OG0016469
Physical Location & Seq
Reverse (-)
206304 .. 206864
561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002539.1_g000055.1.cds

Sequence Viewer

Length: 504 bp
atgaatcgtttgatgaaatggttgcagaaagatcaagaagaggccgtcacgagaagttgtcaaagagccttgatgatgtctgccgcttccttgcaaatccaaactctagaagatgaggattcacaatggggtggttcttcagaaggtcgtaactataaggccagggatcgagagttgatggatcttcgactcaaagctcaatacttcatggatccgtgcaggatgatgcgcgacgtggccaactacgacccatattttgttcagacaagagatgcttgtgggagagtcagcttatccactgcacaaaagctgacatgcgccatgaggatgctcgcttatggcatcacatcgttgaaagtgttcgaccttgttaagagcttggcgccacttcatacatgccggacttattttcttccaacgagcgtggcaactagaatttgttctatccatgcaaccggccggtttgtgagcattgtactcctccgccacacgattccacaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

167

Amino Acids

19.17

Weight (kDa)

9.27

Isoelectric Point (pI)

36.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 382
AccII CGCG 1 cut(s) 231
AciI CCGC 2 cut(s) 84, 484
AclWI GGATC 4 cut(s) 174, 189, 206, 219
AcoI YGGCCR 2 cut(s) 237, 457
AcsI RAATTY 1 cut(s) 435
AcuI CTGAAG 1 cut(s) 123
AcyI GRCGYC 1 cut(s) 383
AfaI GTAC 1 cut(s) 477
AgsI TTSAA 1 cut(s) 355
AjiI CACGTC 1 cut(s) 235
AjnI CCWGG 1 cut(s) 161
AluBI AGCT 4 cut(s) 197, 291, 310, 378
AluI AGCT 4 cut(s) 197, 291, 310, 378
AlwI GGATC 4 cut(s) 174, 189, 206, 219
AoxI GGCC 4 cut(s) 42, 159, 237, 457
ApoI RAATTY 1 cut(s) 435
ArsI GACNNNNNNTTYG 2 cut(s) 239, 271
Asp700I GAANNNNTTC 2 cut(s) 359, 439
AspLEI GCGC 3 cut(s) 231, 320, 385
BalI TGGCCA 1 cut(s) 239
BamHI GGATCC 1 cut(s) 211
BanI GGYRCC 1 cut(s) 382
BauI CACGAG 1 cut(s) 49
BccI CCATC 1 cut(s) 172
BceAI ACGGC 1 cut(s) 29
BciT130I CCWGG 1 cut(s) 163
BfaI CTAG 2 cut(s) 107, 432
BfoI RGCGCY 1 cut(s) 386
BisI GCNGC 1 cut(s) 84
BlsI GCNGC 1 cut(s) 85
Bme1390I CCNGG 1 cut(s) 163
BmgBI CACGTC 1 cut(s) 235
BmiI GGNNCC 2 cut(s) 213, 384
BmrFI CCNGG 1 cut(s) 163
BmsI GCATC 4 cut(s) 216, 262, 318, 351
BsaHI GRCGYC 1 cut(s) 383
BsaJI CCNNGG 1 cut(s) 162
Bse118I RCCGGY 2 cut(s) 455, 459
BseBI CCWGG 1 cut(s) 163
BseDI CCNNGG 1 cut(s) 162
BseGI GGATG 2 cut(s) 228, 333
BseRI GAGGAG 1 cut(s) 470
BseX3I CGGCCG 1 cut(s) 457
BsgI GTGCAG 2 cut(s) 238, 285
Bsh1236I CGCG 1 cut(s) 231
Bsh1285I CGRYCG 1 cut(s) 460
BshFI GGCC 4 cut(s) 44, 161, 239, 459
BshNI GGYRCC 1 cut(s) 382
BsiEI CGRYCG 1 cut(s) 460
BsiSI CCGG 3 cut(s) 400, 456, 460
BsnI GGCC 4 cut(s) 44, 161, 239, 459
Bsp143I GATC 4 cut(s) 31, 166, 181, 211
BspACI CCGC 2 cut(s) 84, 484
BspANI GGCC 4 cut(s) 44, 161, 239, 459
BspFNI CGCG 1 cut(s) 231
BspLI GGNNCC 2 cut(s) 213, 384
BspPI GGATC 4 cut(s) 174, 189, 206, 219
BspT107I GGYRCC 1 cut(s) 382
BsrFI RCCGGY 2 cut(s) 455, 459
BssAI RCCGGY 2 cut(s) 455, 459
BssECI CCNNGG 1 cut(s) 162
BssMI GATC 4 cut(s) 31, 166, 181, 211
BssNI GRCGYC 1 cut(s) 383
BssSI CACGAG 1 cut(s) 49
Bst2BI CACGAG 1 cut(s) 49
Bst2UI CCWGG 1 cut(s) 163
Bst6I CTCTTC 1 cut(s) 33
BstACI GRCGYC 1 cut(s) 383
BstC8I GCNNGC 1 cut(s) 333
BstF5I GGATG 2 cut(s) 228, 333
BstFNI CGCG 1 cut(s) 231
BstH2I RGCGCY 1 cut(s) 386
BstHHI GCGC 3 cut(s) 231, 320, 385
BstKTI GATC 4 cut(s) 34, 169, 184, 214
BstMBI GATC 4 cut(s) 31, 166, 181, 211
BstMCI CGRYCG 1 cut(s) 460
BstNI CCWGG 1 cut(s) 163
BstNSI RCATGY 2 cut(s) 318, 399
BstSCI CCNGG 1 cut(s) 161
BstUI CGCG 1 cut(s) 231
BstX2I RGATCY 2 cut(s) 181, 211
BstYI RGATCY 2 cut(s) 181, 211
BstZI CGGCCG 1 cut(s) 457
BsuRI GGCC 4 cut(s) 44, 161, 239, 459
BtrI CACGTC 1 cut(s) 235
BtsCI GGATG 2 cut(s) 228, 333
BtsI GCAGTG 1 cut(s) 297
BtsIMutI CAGTG 1 cut(s) 297
Cac8I GCNNGC 1 cut(s) 333
CfoI GCGC 3 cut(s) 231, 320, 385
Cfr10I RCCGGY 2 cut(s) 455, 459
Csp6I GTAC 1 cut(s) 476
CspCI CAANNNNNGTGG 2 cut(s) 405, 440
CviAII CATG 5 cut(s) 208, 315, 322, 396, 449
CviJI RGCY 9 cut(s) 44, 68, 161, 197, 239, 291, 310, 378, 459
CviKI_1 RGCY 9 cut(s) 44, 68, 161, 197, 239, 291, 310, 378, 459
CviQI GTAC 1 cut(s) 476
DinI GGCGCC 1 cut(s) 384
DpnI GATC 4 cut(s) 33, 168, 183, 213
DpnII GATC 4 cut(s) 31, 166, 181, 211
EaeI YGGCCR 2 cut(s) 237, 457
EagI CGGCCG 1 cut(s) 457
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
EciI GGCGGA 1 cut(s) 473
EclXI CGGCCG 1 cut(s) 457
Eco52I CGGCCG 1 cut(s) 457
Eco57I CTGAAG 1 cut(s) 123
EcoRII CCWGG 1 cut(s) 161
EgeI GGCGCC 1 cut(s) 384
EheI GGCGCC 1 cut(s) 384
FaeI CATG 5 cut(s) 211, 318, 325, 399, 452
FaiI YATR 9 cut(s) 156, 209, 253, 316, 323, 339, 393, 397, 450
FalI AAGNNNNNCTT 2 cut(s) 259, 291
FatI CATG 5 cut(s) 207, 314, 321, 395, 448
Fnu4HI GCNGC 1 cut(s) 84
FokI GGATG 2 cut(s) 235, 340
Fsp4HI GCNGC 1 cut(s) 84
FspBI CTAG 2 cut(s) 107, 432
GlaI GCGC 3 cut(s) 230, 319, 384
GluI GCNGC 1 cut(s) 84
HaeII RGCGCY 1 cut(s) 386
HaeIII GGCC 4 cut(s) 44, 161, 239, 459
HapII CCGG 3 cut(s) 400, 456, 460
HhaI GCGC 3 cut(s) 231, 320, 385
Hin1I GRCGYC 1 cut(s) 383
Hin1II CATG 5 cut(s) 211, 318, 325, 399, 452
Hin6I GCGC 3 cut(s) 229, 318, 383
HinP1I GCGC 3 cut(s) 229, 318, 383
HinfI GANTC 5 cut(s) 4, 119, 189, 285, 493
HpaII CCGG 3 cut(s) 400, 456, 460
Hpy188I TCNGA 2 cut(s) 142, 264
Hpy188III TCNNGA 4 cut(s) 35, 49, 107, 170
Hpy99I CGWCG 1 cut(s) 236
HpyAV CCTTC 1 cut(s) 137
HpyCH4IV ACGT 1 cut(s) 234
HpyCH4V TGCA 5 cut(s) 25, 94, 219, 302, 452
HpySE526I ACGT 1 cut(s) 234
Hsp92I GRCGYC 1 cut(s) 383
Hsp92II CATG 5 cut(s) 211, 318, 325, 399, 452
HspAI GCGC 3 cut(s) 229, 318, 383
KasI GGCGCC 1 cut(s) 382
Kzo9I GATC 4 cut(s) 31, 166, 181, 211
LpnPI CCDG 6 cut(s) 148, 175, 205, 413, 469, 473
LweI GCATC 4 cut(s) 216, 262, 318, 351
MaeI CTAG 2 cut(s) 107, 432
MaeII ACGT 1 cut(s) 234
MaeIII GTNAC 2 cut(s) 46, 149
MalI GATC 4 cut(s) 33, 168, 183, 213
MboI GATC 4 cut(s) 31, 166, 181, 211
MboII GAAGA 5 cut(s) 50, 122, 129, 176, 404
MflI RGATCY 2 cut(s) 181, 211
MlsI TGGCCA 1 cut(s) 239
MluCI AATT 1 cut(s) 435
MluNI TGGCCA 1 cut(s) 239
Mly113I GGCGCC 1 cut(s) 383
MlyI GAGTC 2 cut(s) 183, 294
MmeI TCCRAC 1 cut(s) 440
MnlI CCTC 4 cut(s) 34, 109, 318, 491
Mox20I TGGCCA 1 cut(s) 239
MroXI GAANNNNTTC 2 cut(s) 359, 439
MscI TGGCCA 1 cut(s) 239
MseI TTAA 1 cut(s) 372
MslI CAYNNNNRTG 1 cut(s) 326
Msp20I TGGCCA 1 cut(s) 239
MspI CCGG 3 cut(s) 400, 456, 460
MspR9I CCNGG 1 cut(s) 163
MvaI CCWGG 1 cut(s) 163
MvnI CGCG 1 cut(s) 231
NarI GGCGCC 1 cut(s) 383
NdeII GATC 4 cut(s) 31, 166, 181, 211
NlaIII CATG 5 cut(s) 211, 318, 325, 399, 452
NlaIV GGNNCC 2 cut(s) 213, 384
NmuCI GTSAC 1 cut(s) 46
NspI RCATGY 2 cut(s) 318, 399
PdmI GAANNNNTTC 2 cut(s) 359, 439
PfeI GAWTC 3 cut(s) 4, 119, 493
PkrI GCNGC 1 cut(s) 85
PleI GAGTC 2 cut(s) 183, 293
PluTI GGCGCC 1 cut(s) 386
PpsI GAGTC 2 cut(s) 183, 293
Psp6I CCWGG 1 cut(s) 161
PspGI CCWGG 1 cut(s) 161
PspN4I GGNNCC 2 cut(s) 213, 384
PsuI RGATCY 2 cut(s) 181, 211
RsaI GTAC 1 cut(s) 477
RsaNI GTAC 1 cut(s) 476
RseI CAYNNNNRTG 1 cut(s) 326
SaqAI TTAA 1 cut(s) 372
SatI GCNGC 1 cut(s) 84
Sau3AI GATC 4 cut(s) 31, 166, 181, 211
SchI GAGTC 2 cut(s) 183, 294
ScrFI CCNGG 1 cut(s) 163
SetI ASST 7 cut(s) 148, 199, 237, 293, 312, 369, 380
SfaNI GCATC 4 cut(s) 216, 262, 318, 351
SfoI GGCGCC 1 cut(s) 384
SmiMI CAYNNNNRTG 1 cut(s) 326
Sse9I AATT 1 cut(s) 435
SsiI CCGC 2 cut(s) 84, 484
SspDI GGCGCC 1 cut(s) 382
SspMI CTAG 2 cut(s) 107, 432
StyD4I CCNGG 1 cut(s) 161
TaiI ACGT 1 cut(s) 237
TaqI TCGA 3 cut(s) 169, 187, 363
TasI AATT 1 cut(s) 435
TatI WGTACW 1 cut(s) 475
TauI GCSGC 1 cut(s) 86
TfiI GAWTC 3 cut(s) 4, 119, 493
Tru1I TTAA 1 cut(s) 372
Tru9I TTAA 1 cut(s) 372
TscAI CASTG 1 cut(s) 304
TseFI GTSAC 1 cut(s) 46
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 4 cut(s) 17, 29, 196, 380
TspGWI ACGGA 1 cut(s) 204
TspRI CASTG 1 cut(s) 304
XapI RAATTY 1 cut(s) 435
XbaI TCTAGA 1 cut(s) 106
XceI RCATGY 2 cut(s) 318, 399
XmnI GAANNNNTTC 2 cut(s) 359, 439
XspI CTAG 2 cut(s) 107, 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.