Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001651.1

Orthogroup ID

OG0016469

Physical Location & Seq

Genomic Coordinates Reverse (-)

83673 .. 84158

Gene Structure 486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001651.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

atgaattgtttgacgaaatggttgcagaaagatcaagaagaggccgtcacgagaagccgtcgacgagccttgatgatgtctgtcgctaccttgcaaatccaaactctggaagatgaggattcacaatggggtggctcttcagaaggtcgtacctataaggccagggatcgagagctgatggatcttcgactcaaagttcaatacttcatggatccgtgcatgtatgaatcaaacatatttcacaggcgatatagaatgcaaccttgggtttttgacaagatgatgtgtgacgtggccaactacgatccatattttgttcaaacaagagatgcttgtgggagactcagcttatccactgaaccaaaactgacatgcgccatgagaatgctcgcatatggcatcacagctgatttctgtgatgattacctagatattgcgaaaaccactaccattgatatttttgagcacttcacaaaagcaatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_tran

Protein Analysis

161

Amino Acids

19.04

Weight (kDa)

5.73

Isoelectric Point (pI)

54.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016469)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001144.1_g000027 Rmu_sc0001144.1_g000028 Rmu_sc0001348.1_g000015 Rmu_sc0001651.1_g000018 Rmu_sc0001873.1_g000005 Rmu_sc0002539.1_g000055 Rmu_sc0002902.1_g000047 Rmu_sc0003317.1_g000012 Rmu_sc0003927.1_g000004 Rmu_sc0004088.1_g000008 Rmu_sc0004324.1_g000007 Rmu_sc0006273.1_g000016 Rmu_sc0007034.1_g000016 Rmu_sc0007239.1_g000009 Rmu_sc0007314.1_g000008

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	106
AccI	GTMKAC	1 cut(s)	61
AclWI	GGATC	5 cut(s)	174, 189, 206, 219, 299
AcoI	YGGCCR	1 cut(s)	294
AcuI	CTGAAG	1 cut(s)	123
AfaI	GTAC	1 cut(s)	151
AfiI	CCNNNNNNNGG	1 cut(s)	106
AgsI	TTSAA	2 cut(s)	200, 320
AjiI	CACGTC	1 cut(s)	292
AjnI	CCWGG	1 cut(s)	161
AjuI	GAANNNNNNNTTGG	2 cut(s)	247, 279
AluBI	AGCT	3 cut(s)	175, 348, 407
AluI	AGCT	3 cut(s)	175, 348, 407
Alw21I	GWGCWC	1 cut(s)	468
Alw26I	GTCTC	1 cut(s)	334
AlwI	GGATC	5 cut(s)	174, 189, 206, 219, 299
AoxI	GGCC	3 cut(s)	42, 159, 294
AspLEI	GCGC	1 cut(s)	377
BalI	TGGCCA	1 cut(s)	296
BamHI	GGATCC	1 cut(s)	211
BauI	CACGAG	1 cut(s)	49
Bbv12I	GWGCWC	1 cut(s)	468
BccI	CCATC	1 cut(s)	172
BceAI	ACGGC	2 cut(s)	29, 42
BcgI	CGANNNNNNTGC	2 cut(s)	4, 38
BciT130I	CCWGG	1 cut(s)	163
BcoDI	GTCTC	1 cut(s)	334
BfaI	CTAG	2 cut(s)	428, 484
Bme1390I	CCNGG	1 cut(s)	163
BmgBI	CACGTC	1 cut(s)	292
BmiI	GGNNCC	1 cut(s)	213
BmrFI	CCNGG	1 cut(s)	163
BmsI	GCATC	2 cut(s)	319, 408
BsaJI	CCNNGG	2 cut(s)	162, 263
Bsc4I	CCNNNNNNNGG	1 cut(s)	106
BseBI	CCWGG	1 cut(s)	163
BseDI	CCNNGG	2 cut(s)	162, 263
BseLI	CCNNNNNNNGG	1 cut(s)	106
BseMII	CTCAG	1 cut(s)	358
BshFI	GGCC	3 cut(s)	44, 161, 296
BsiHKAI	GWGCWC	1 cut(s)	468
BslI	CCNNNNNNNGG	1 cut(s)	106
BsmAI	GTCTC	1 cut(s)	334
BsmI	GAATGC	2 cut(s)	261, 390
BsnI	GGCC	3 cut(s)	44, 161, 296
Bsp1286I	GDGCHC	1 cut(s)	468
Bsp143I	GATC	5 cut(s)	31, 166, 181, 211, 304
BspANI	GGCC	3 cut(s)	44, 161, 296
BspCNI	CTCAG	1 cut(s)	357
BspLI	GGNNCC	1 cut(s)	213
BspPI	GGATC	5 cut(s)	174, 189, 206, 219, 299
BspQI	GCTCTTC	1 cut(s)	142
BssECI	CCNNGG	2 cut(s)	162, 263
BssMI	GATC	5 cut(s)	31, 166, 181, 211, 304
BssSI	CACGAG	1 cut(s)	49
BssT1I	CCWWGG	1 cut(s)	263
Bst2BI	CACGAG	1 cut(s)	49
Bst2UI	CCWGG	1 cut(s)	163
Bst6I	CTCTTC	2 cut(s)	33, 142
BstC8I	GCNNGC	1 cut(s)	390
BstDEI	CTNAG	1 cut(s)	344
BstHHI	GCGC	1 cut(s)	377
BstKTI	GATC	5 cut(s)	34, 169, 184, 214, 307
BstMAI	GTCTC	1 cut(s)	334
BstMBI	GATC	5 cut(s)	31, 166, 181, 211, 304
BstNI	CCWGG	1 cut(s)	163
BstNSI	RCATGY	2 cut(s)	223, 375
BstSCI	CCNGG	1 cut(s)	161
BstX2I	RGATCY	2 cut(s)	181, 211
BstYI	RGATCY	2 cut(s)	181, 211
BsuRI	GGCC	3 cut(s)	44, 161, 296
BtrI	CACGTC	1 cut(s)	292
BtsIMutI	CAGTG	1 cut(s)	354
Cac8I	GCNNGC	1 cut(s)	390
CfoI	GCGC	1 cut(s)	377
Csp6I	GTAC	1 cut(s)	150
CspCI	CAANNNNNGTGG	2 cut(s)	433, 468
CviAII	CATG	4 cut(s)	208, 220, 372, 379
CviJI	RGCY	9 cut(s)	44, 57, 68, 135, 161, 175, 296, 348, 407
CviKI_1	RGCY	9 cut(s)	44, 57, 68, 135, 161, 175, 296, 348, 407
CviQI	GTAC	1 cut(s)	150
DdeI	CTNAG	1 cut(s)	344
DpnI	GATC	5 cut(s)	33, 168, 183, 213, 306
DpnII	GATC	5 cut(s)	31, 166, 181, 211, 304
EaeI	YGGCCR	1 cut(s)	294
Eam1104I	CTCTTC	2 cut(s)	33, 142
EarI	CTCTTC	2 cut(s)	33, 142
Eco130I	CCWWGG	1 cut(s)	263
Eco57I	CTGAAG	1 cut(s)	123
EcoRII	CCWGG	1 cut(s)	161
EcoT14I	CCWWGG	1 cut(s)	263
ErhI	CCWWGG	1 cut(s)	263
FaeI	CATG	4 cut(s)	211, 223, 375, 382
FalI	AAGNNNNNCTT	2 cut(s)	316, 348
FatI	CATG	4 cut(s)	207, 219, 371, 378
FauNDI	CATATG	1 cut(s)	394
FblI	GTMKAC	1 cut(s)	61
FspBI	CTAG	2 cut(s)	428, 484
GlaI	GCGC	1 cut(s)	376
HaeIII	GGCC	3 cut(s)	44, 161, 296
HhaI	GCGC	1 cut(s)	377
Hin1II	CATG	4 cut(s)	211, 223, 375, 382
Hin6I	GCGC	1 cut(s)	375
HinP1I	GCGC	1 cut(s)	375
HincII	GTYRAC	1 cut(s)	62
HindII	GTYRAC	1 cut(s)	62
HinfI	GANTC	4 cut(s)	119, 189, 227, 342
Hpy166II	GTNNAC	1 cut(s)	62
Hpy188I	TCNGA	1 cut(s)	142
Hpy188III	TCNNGA	4 cut(s)	35, 49, 107, 170
Hpy8I	GTNNAC	1 cut(s)	62
Hpy99I	CGWCG	2 cut(s)	63, 66
HpyAV	CCTTC	1 cut(s)	137
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	4 cut(s)	25, 94, 219, 259
HpyF3I	CTNAG	1 cut(s)	344
HpySE526I	ACGT	1 cut(s)	291
Hsp92II	CATG	4 cut(s)	211, 223, 375, 382
HspAI	GCGC	1 cut(s)	375
Kzo9I	GATC	5 cut(s)	31, 166, 181, 211, 304
LguI	GCTCTTC	1 cut(s)	142
LpnPI	CCDG	4 cut(s)	92, 148, 175, 229
LweI	GCATC	2 cut(s)	319, 408
MaeI	CTAG	2 cut(s)	428, 484
MaeII	ACGT	1 cut(s)	291
MaeIII	GTNAC	2 cut(s)	46, 287
MalI	GATC	5 cut(s)	33, 168, 183, 213, 306
MboI	GATC	5 cut(s)	31, 166, 181, 211, 304
MboII	GAAGA	4 cut(s)	50, 122, 129, 176
MflI	RGATCY	2 cut(s)	181, 211
MhlI	GDGCHC	1 cut(s)	468
MlsI	TGGCCA	1 cut(s)	296
MluCI	AATT	1 cut(s)	4
MluNI	TGGCCA	1 cut(s)	296
MlyI	GAGTC	2 cut(s)	183, 336
MnlI	CCTC	2 cut(s)	34, 109
Mox20I	TGGCCA	1 cut(s)	296
MscI	TGGCCA	1 cut(s)	296
MslI	CAYNNNNRTG	1 cut(s)	383
Msp20I	TGGCCA	1 cut(s)	296
MspA1I	CMGCKG	1 cut(s)	407
MspR9I	CCNGG	1 cut(s)	163
Mva1269I	GAATGC	2 cut(s)	261, 390
MvaI	CCWGG	1 cut(s)	163
NdeI	CATATG	1 cut(s)	394
NdeII	GATC	5 cut(s)	31, 166, 181, 211, 304
NlaIII	CATG	4 cut(s)	211, 223, 375, 382
NlaIV	GGNNCC	1 cut(s)	213
NmuCI	GTSAC	2 cut(s)	46, 287
NspI	RCATGY	2 cut(s)	223, 375
PciSI	GCTCTTC	1 cut(s)	142
PctI	GAATGC	2 cut(s)	261, 390
PfeI	GAWTC	2 cut(s)	119, 227
PflMI	CCANNNNNTGG	1 cut(s)	106
PleI	GAGTC	2 cut(s)	183, 336
PpsI	GAGTC	2 cut(s)	183, 336
Psp6I	CCWGG	1 cut(s)	161
PspGI	CCWGG	1 cut(s)	161
PspN4I	GGNNCC	1 cut(s)	213
PsuI	RGATCY	2 cut(s)	181, 211
PvuII	CAGCTG	1 cut(s)	407
RsaI	GTAC	1 cut(s)	151
RsaNI	GTAC	1 cut(s)	150
RseI	CAYNNNNRTG	1 cut(s)	383
SalI	GTCGAC	1 cut(s)	60
SapI	GCTCTTC	1 cut(s)	142
Sau3AI	GATC	5 cut(s)	31, 166, 181, 211, 304
SchI	GAGTC	2 cut(s)	183, 336
ScrFI	CCNGG	1 cut(s)	163
SduI	GDGCHC	1 cut(s)	468
SetI	ASST	9 cut(s)	92, 148, 155, 177, 265, 294, 350, 409, 429
SfaNI	GCATC	2 cut(s)	319, 408
SgrDI	CGTCGACG	1 cut(s)	60
SmiMI	CAYNNNNRTG	1 cut(s)	383
Sse9I	AATT	1 cut(s)	4
SspMI	CTAG	2 cut(s)	428, 484
StyD4I	CCNGG	1 cut(s)	161
StyI	CCWWGG	1 cut(s)	263
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	3 cut(s)	61, 169, 187
TasI	AATT	1 cut(s)	4
TfiI	GAWTC	2 cut(s)	119, 227
TscAI	CASTG	1 cut(s)	361
TseFI	GTSAC	2 cut(s)	46, 287
Tsp45I	GTSAC	2 cut(s)	46, 287
TspDTI	ATGAA	3 cut(s)	17, 196, 240
TspGWI	ACGGA	1 cut(s)	204
TspRI	CASTG	1 cut(s)	361
Van91I	CCANNNNNTGG	1 cut(s)	106
XceI	RCATGY	2 cut(s)	223, 375
XmiI	GTMKAC	1 cut(s)	61
XspI	CTAG	2 cut(s)	428, 484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.