Rmu_sc0001353.1_g000039

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001353.1
OG0013540
Physical Location & Seq
Reverse (-)
144299 .. 145192
894 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 405 bp
atggataaggacagccttgtgccctccgacgacgccgaagatggagtcttgcttggtaccatgaaattgcctgatgatactgactttcccagattccaaatcttgctcttccagtgggctaacagtctctgccaaggagcaaatctaccgcttgatatgcctttgaaggttgacaaaatagcaggtgggactagattgggtttcattacaattggggatggggagacggaggtcattggctacattgattgcttggttttccctccagaaggtggttccggtcccatttttcgagctgttagaaatggacgtttgaaggatcgggtccttcccggggagcccaggatcatgagaaatcttatgcaggctcttcagaagtcggttcaaatcgctagagtgtattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

14.75

Weight (kDa)

4.89

Isoelectric Point (pI)

23.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7148 PF23650 13 - 132 8.1e-58 Domain of unknown function (DUF7148)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013540)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36145
fragaria_vesca FvH4_6g19360
malus_domestica MD12G1029300.v1.1 MD12G1029500.v1.1 MD14G1029600.v1.1 MD14G1029800.v1.1
prunus_persica Prupe.7G102300_v2.0.a1
pyrus_communis pycom14g02750
rosa_chinensis RchiOBHm_Chr3g0474621
rosa_laevigata RLG00000023907
rosa_multiflora Rmu_sc0001353.1_g000039 Rmu_sc0001353.1_g000048
rosa_roxburghii Rroxscaffold_6G00407040
rosa_rugosa Rorug03G0142200
rosa_samantha Rh3AG192500 Rh3BG222400 Rh3CG217100 Rh3DG218000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 173
Acc36I ACCTGC 1 cut(s) 173
Acc65I GGTACC 1 cut(s) 56
AccB1I GGYRCC 1 cut(s) 56
AccB7I CCANNNNNTGG 1 cut(s) 272
AciI CCGC 1 cut(s) 149
AclWI GGATC 2 cut(s) 327, 353
AcuI CTGAAG 1 cut(s) 356
AcyI GRCGYC 1 cut(s) 33
AfaI GTAC 1 cut(s) 58
AfiI CCNNNNNNNGG 3 cut(s) 269, 272, 334
AgsI TTSAA 3 cut(s) 166, 316, 386
AjnI CCWGG 1 cut(s) 341
AluBI AGCT 1 cut(s) 296
AluI AGCT 1 cut(s) 296
Alw26I GTCTC 2 cut(s) 131, 218
AlwI GGATC 2 cut(s) 327, 353
AlwNI CAGNNNCTG 1 cut(s) 129
Ama87I CYCGRG 1 cut(s) 332
ArsI GACNNNNNNTTYG 2 cut(s) 30, 62
Asp718I GGTACC 1 cut(s) 56
AspS9I GGNCC 2 cut(s) 281, 325
AsuC2I CCSGG 2 cut(s) 333, 334
AvaI CYCGRG 1 cut(s) 332
AvaII GGWCC 2 cut(s) 281, 325
BaeGI GKGCMC 1 cut(s) 24
BanI GGYRCC 1 cut(s) 56
BanII GRGCYC 1 cut(s) 342
BccI CCATC 2 cut(s) 35, 212
BciT130I CCWGG 1 cut(s) 343
BcnI CCSGG 2 cut(s) 333, 334
BcoDI GTCTC 2 cut(s) 131, 218
BfaI CTAG 2 cut(s) 192, 393
BfuAI ACCTGC 1 cut(s) 173
Bme1390I CCNGG 3 cut(s) 333, 334, 343
Bme18I GGWCC 2 cut(s) 281, 325
BmeT110I CYCGRG 1 cut(s) 332
BmgT120I GGNCC 2 cut(s) 281, 325
BmiI GGNNCC 5 cut(s) 58, 277, 283, 326, 339
BmrFI CCNGG 3 cut(s) 333, 334, 343
BoxI GACNNNNGTC 1 cut(s) 230
BpmI CTGGAG 1 cut(s) 249
BpuMI CCSGG 2 cut(s) 333, 334
BsaHI GRCGYC 1 cut(s) 33
BsaJI CCNNGG 4 cut(s) 133, 332, 333, 341
BsaWI WCCGGW 1 cut(s) 278
Bsc4I CCNNNNNNNGG 3 cut(s) 269, 272, 334
Bse1I ACTGG 1 cut(s) 112
BseBI CCWGG 1 cut(s) 343
BseDI CCNNGG 4 cut(s) 133, 332, 333, 341
BseGI GGATG 1 cut(s) 223
BseLI CCNNNNNNNGG 3 cut(s) 269, 272, 334
BseNI ACTGG 1 cut(s) 112
BseSI GKGCMC 1 cut(s) 24
BshNI GGYRCC 1 cut(s) 56
BsiHKCI CYCGRG 1 cut(s) 332
BsiSI CCGG 2 cut(s) 279, 333
BslFI GGGAC 2 cut(s) 202, 267
BslI CCNNNNNNNGG 3 cut(s) 269, 272, 334
BsmAI GTCTC 2 cut(s) 131, 218
BsmBI CGTCTC 1 cut(s) 218
BsmFI GGGAC 2 cut(s) 202, 267
BsoBI CYCGRG 1 cut(s) 332
Bsp1286I GDGCHC 2 cut(s) 24, 342
Bsp143I GATC 2 cut(s) 319, 345
BspACI CCGC 1 cut(s) 149
BspHI TCATGA 1 cut(s) 348
BspLI GGNNCC 5 cut(s) 58, 277, 283, 326, 339
BspMI ACCTGC 1 cut(s) 173
BspPI GGATC 2 cut(s) 327, 353
BspQI GCTCTTC 2 cut(s) 113, 375
BspT107I GGYRCC 1 cut(s) 56
BsrI ACTGG 1 cut(s) 112
BssECI CCNNGG 4 cut(s) 133, 332, 333, 341
BssMI GATC 2 cut(s) 319, 345
BssNI GRCGYC 1 cut(s) 33
BssT1I CCWWGG 1 cut(s) 133
Bst2UI CCWGG 1 cut(s) 343
Bst4CI ACNGT 1 cut(s) 125
Bst6I CTCTTC 2 cut(s) 113, 375
BstACI GRCGYC 1 cut(s) 33
BstC8I GCNNGC 1 cut(s) 366
BstENI CCTNNNNNAGG 1 cut(s) 267
BstF5I GGATG 1 cut(s) 223
BstKTI GATC 2 cut(s) 322, 348
BstMAI GTCTC 2 cut(s) 131, 218
BstMBI GATC 2 cut(s) 319, 345
BstMWI GCNNNNNNNGC 1 cut(s) 157
BstNI CCWGG 1 cut(s) 343
BstPAI GACNNNNGTC 1 cut(s) 230
BstSCI CCNGG 3 cut(s) 331, 332, 341
BstSLI GKGCMC 1 cut(s) 24
BtsCI GGATG 1 cut(s) 223
BtsIMutI CAGTG 1 cut(s) 119
BveI ACCTGC 1 cut(s) 173
Cac8I GCNNGC 1 cut(s) 366
CaiI CAGNNNCTG 1 cut(s) 129
CciI TCATGA 1 cut(s) 348
Cfr13I GGNCC 2 cut(s) 281, 325
Cfr9I CCCGGG 1 cut(s) 332
CseI GACGC 1 cut(s) 41
Csp6I GTAC 1 cut(s) 57
CviAII CATG 2 cut(s) 61, 349
CviJI RGCY 6 cut(s) 15, 119, 240, 296, 340, 368
CviKI_1 RGCY 6 cut(s) 15, 119, 240, 296, 340, 368
CviQI GTAC 1 cut(s) 57
DpnI GATC 2 cut(s) 321, 347
DpnII GATC 2 cut(s) 319, 345
Eam1104I CTCTTC 2 cut(s) 113, 375
EarI CTCTTC 2 cut(s) 113, 375
Eco130I CCWWGG 1 cut(s) 133
Eco24I GRGCYC 1 cut(s) 342
Eco47I GGWCC 2 cut(s) 281, 325
Eco57I CTGAAG 1 cut(s) 356
Eco88I CYCGRG 1 cut(s) 332
EcoNI CCTNNNNNAGG 1 cut(s) 267
EcoO109I RGGNCCY 1 cut(s) 325
EcoRII CCWGG 1 cut(s) 341
EcoT14I CCWWGG 1 cut(s) 133
EcoT38I GRGCYC 1 cut(s) 342
ErhI CCWWGG 1 cut(s) 133
Esp3I CGTCTC 1 cut(s) 218
FaeI CATG 2 cut(s) 64, 352
FaiI YATR 4 cut(s) 62, 158, 350, 362
FaqI GGGAC 2 cut(s) 202, 267
FatI CATG 2 cut(s) 60, 348
FokI GGATG 1 cut(s) 230
FriOI GRGCYC 1 cut(s) 342
FspBI CTAG 2 cut(s) 192, 393
GsuI CTGGAG 1 cut(s) 249
HapII CCGG 2 cut(s) 279, 333
HgaI GACGC 1 cut(s) 41
Hin1I GRCGYC 1 cut(s) 33
Hin1II CATG 2 cut(s) 64, 352
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HinfI GANTC 2 cut(s) 45, 93
HpaII CCGG 2 cut(s) 279, 333
Hpy166II GTNNAC 1 cut(s) 172
Hpy188I TCNGA 2 cut(s) 28, 375
Hpy188III TCNNGA 2 cut(s) 266, 349
Hpy8I GTNNAC 1 cut(s) 172
Hpy99I CGWCG 2 cut(s) 32, 35
HpyAV CCTTC 4 cut(s) 160, 263, 310, 338
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4IV ACGT 1 cut(s) 310
HpyCH4V TGCA 1 cut(s) 364
HpyF10VI GCNNNNNNNGC 1 cut(s) 157
HpySE526I ACGT 1 cut(s) 310
Hsp92I GRCGYC 1 cut(s) 33
Hsp92II CATG 2 cut(s) 64, 352
KpnI GGTACC 1 cut(s) 60
Kzo9I GATC 2 cut(s) 319, 345
LguI GCTCTTC 2 cut(s) 113, 375
LmnI GCTCC 2 cut(s) 137, 337
MaeI CTAG 2 cut(s) 192, 393
MaeII ACGT 1 cut(s) 310
MalI GATC 2 cut(s) 321, 347
MboI GATC 2 cut(s) 319, 345
MboII GAAGA 3 cut(s) 50, 100, 362
MfeI CAATTG 1 cut(s) 210
MhlI GDGCHC 2 cut(s) 24, 342
MluCI AATT 2 cut(s) 65, 210
MlyI GAGTC 1 cut(s) 54
MmeI TCCRAC 1 cut(s) 51
MnlI CCTC 3 cut(s) 34, 223, 273
MspI CCGG 2 cut(s) 279, 333
MspR9I CCNGG 3 cut(s) 333, 334, 343
MunI CAATTG 1 cut(s) 210
MvaI CCWGG 1 cut(s) 343
MwoI GCNNNNNNNGC 1 cut(s) 157
NciI CCSGG 2 cut(s) 333, 334
NdeII GATC 2 cut(s) 319, 345
NlaIII CATG 2 cut(s) 64, 352
NlaIV GGNNCC 5 cut(s) 58, 277, 283, 326, 339
PagI TCATGA 1 cut(s) 348
PaqCI CACCTGC 1 cut(s) 173
PciSI GCTCTTC 2 cut(s) 113, 375
PfeI GAWTC 1 cut(s) 93
PflMI CCANNNNNTGG 1 cut(s) 272
PleI GAGTC 1 cut(s) 53
PpsI GAGTC 1 cut(s) 53
PpuMI RGGWCCY 1 cut(s) 325
PshAI GACNNNNGTC 1 cut(s) 230
Psp5II RGGWCCY 1 cut(s) 325
Psp6I CCWGG 1 cut(s) 341
PspGI CCWGG 1 cut(s) 341
PspN4I GGNNCC 5 cut(s) 58, 277, 283, 326, 339
PspPI GGNCC 2 cut(s) 281, 325
PspPPI RGGWCCY 1 cut(s) 325
PstNI CAGNNNCTG 1 cut(s) 129
RsaI GTAC 1 cut(s) 58
RsaNI GTAC 1 cut(s) 57
SapI GCTCTTC 2 cut(s) 113, 375
Sau3AI GATC 2 cut(s) 319, 345
Sau96I GGNCC 2 cut(s) 281, 325
SchI GAGTC 1 cut(s) 54
ScrFI CCNGG 3 cut(s) 333, 334, 343
SduI GDGCHC 2 cut(s) 24, 342
SetI ASST 6 cut(s) 171, 187, 234, 274, 298, 313
SinI GGWCC 2 cut(s) 281, 325
SmaI CCCGGG 1 cut(s) 334
Sse9I AATT 2 cut(s) 65, 210
SsiI CCGC 1 cut(s) 149
SspMI CTAG 2 cut(s) 192, 393
StyD4I CCNGG 3 cut(s) 331, 332, 341
StyI CCWWGG 1 cut(s) 133
TaaI ACNGT 1 cut(s) 125
TaiI ACGT 1 cut(s) 313
TaqI TCGA 1 cut(s) 292
TasI AATT 2 cut(s) 65, 210
TfiI GAWTC 1 cut(s) 93
TscAI CASTG 1 cut(s) 119
TspDTI ATGAA 2 cut(s) 77, 193
TspGWI ACGGA 1 cut(s) 242
TspMI CCCGGG 1 cut(s) 332
TspRI CASTG 1 cut(s) 119
Van91I CCANNNNNTGG 1 cut(s) 272
VpaK11BI GGWCC 2 cut(s) 281, 325
XagI CCTNNNNNAGG 1 cut(s) 267
XmaI CCCGGG 1 cut(s) 332
XspI CTAG 2 cut(s) 192, 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.