Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001362.1

Orthogroup ID

OG0004911

Physical Location & Seq

Genomic Coordinates Forward (+)

89299 .. 93022

Gene Structure 3724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

atgggattatctgattgctcttcggtagacagttcaaaagtctcccatgtagatggaagtaaaagtagactgaacctgaaggctacggaacttaggcttgggcttcctggatcccagtctcctgacagagactcagaactgaggctagtctccactaaacttgatgagaaaccccttttcccattacatcctttaaaggattcattgcagaaaacagttgtttcaggcaacaagagagggttctctgatgctatggatcagttctcagagggcaaatatgctaatacagaggtaaacatgttgctgtcacccaggccttctccaaacttgggattgaaaactggttctgtacttgagaaccttgggagtcaggagcccaaaatgaaagagatagcaccaccaaagataatgcaagagaggcctcatgctgccaaagaaactaggccaaatcattctagtactaacagtgcacctgctaccaaggcgcaggttgttggttggccacctataagatcatttaggaagaactcattggccactgtctcaaagaacgtggaggaagtagatggaaaagcagggcctggtgctctatatgtcaaagtcagcatggatggtgctccttatttgaggaaagtagatttgaaacattactctgcataccaggaactttcttctgctcttgaaaagatgtttagctgttttactataggtcaatatggatctcatggagctctgggcagagagattagtgaaagcaagctgaaggatctccttcatggctcagaatatgtcctcacctacgaggacaaagatggtgactggatgcttgtgggtgatgtcccttgggagatgtttatcgatacctgcaaaaggatgaggataatgaaaagctcagatgccattggccttgctccaagagccatggagaagtgcaggaacaggaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

315

Amino Acids

34.72

Weight (kDa)

8.97

Isoelectric Point (pI)

41.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	28 - 306	1.8e-88	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22670 AT2G22670 AT2G22670 AT2G22670 AT2G22670
fragaria_vesca	FvH4_5g33790 FvH4_5g33790 FvH4_5g33790 FvH4_5g33790 FvH4_5g33790 FvH4_5g33790 FvH4_5g33790 FvH4_5g33790
malus_domestica	MD08G1207300.v1.1 MD15G1391700.v1.1
prunus_persica	Prupe.1G540700_v2.0.a1
pyrus_communis	pycom08g17960 pycom15g35260
rosa_chinensis	RchiOBHm_Chr7g0233101
rosa_laevigata	RLG00000001299
rosa_multiflora	Rmu_co8377091.1_g000001 Rmu_sc0001362.1_g000019
rosa_roxburghii	Rroxscaffold_3G00227660
rosa_rugosa	Rorug07G0278100 Rorug07G0278200
rosa_samantha	Rh7AG433600 Rh7BG406400 Rh7CG452800 Rh7DG422000
rosa_wichuraiana	Rw7G035740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	481
Acc36I	ACCTGC	3 cut(s)	478, 481, 872
AccI	GTMKAC	2 cut(s)	27, 67
AclWI	GGATC	5 cut(s)	105, 118, 264, 727, 774
AcoI	YGGCCR	2 cut(s)	500, 534
AcuI	CTGAAG	2 cut(s)	98, 782
AfaI	GTAC	2 cut(s)	351, 460
AfiI	CCNNNNNNNGG	2 cut(s)	329, 870
AflIII	ACRYGT	1 cut(s)	297
AgsI	TTSAA	4 cut(s)	36, 337, 643, 683
AjnI	CCWGG	4 cut(s)	106, 311, 580, 660
AjuI	GAANNNNNNNTTGG	4 cut(s)	81, 113, 515, 547
AluBI	AGCT	4 cut(s)	696, 731, 760, 891
AluI	AGCT	4 cut(s)	696, 731, 760, 891
Alw21I	GWGCWC	4 cut(s)	472, 589, 619, 733
Alw26I	GTCTC	5 cut(s)	46, 123, 123, 154, 547
Alw44I	GTGCAC	1 cut(s)	468
AlwI	GGATC	5 cut(s)	105, 118, 264, 727, 774
AlwNI	CAGNNNCTG	1 cut(s)	581
AoxI	GGCC	7 cut(s)	314, 419, 443, 500, 534, 578, 904
ApaLI	GTGCAC	1 cut(s)	468
ApeKI	GCWGC	1 cut(s)	428
AspLEI	GCGC	1 cut(s)	487
AspS9I	GGNCC	1 cut(s)	578
AsuHPI	GGTGA	4 cut(s)	300, 787, 827, 845
BaeGI	GKGCMC	1 cut(s)	472
BalI	TGGCCA	2 cut(s)	502, 536
BamHI	GGATCC	1 cut(s)	110
BanII	GRGCYC	2 cut(s)	378, 733
Bbv12I	GWGCWC	4 cut(s)	472, 589, 619, 733
BbvI	GCAGC	1 cut(s)	415
BccI	CCATC	4 cut(s)	47, 560, 605, 806
BciT130I	CCWGG	4 cut(s)	108, 313, 582, 662
BcoDI	GTCTC	5 cut(s)	46, 123, 123, 154, 547
BfaI	CTAG	4 cut(s)	146, 441, 456, 946
BfmI	CTRYAG	1 cut(s)	705
BfuAI	ACCTGC	3 cut(s)	478, 481, 872
BisI	GCNGC	1 cut(s)	429
BlsI	GCNGC	1 cut(s)	430
BmcAI	AGTACT	1 cut(s)	460
Bme1390I	CCNGG	4 cut(s)	108, 313, 582, 662
BmgT120I	GGNCC	1 cut(s)	578
BmiI	GGNNCC	2 cut(s)	112, 375
BmrFI	CCNGG	4 cut(s)	108, 313, 582, 662
BmrI	ACTGGG	1 cut(s)	109
BmsI	GCATC	3 cut(s)	238, 813, 886
BmuI	ACTGGG	1 cut(s)	109
BpuEI	CTTGAG	1 cut(s)	374
Bsa29I	ATCGAT	1 cut(s)	858
BsaBI	GATNNNNATC	1 cut(s)	854
BsaJI	CCNNGG	5 cut(s)	311, 361, 480, 842, 921
Bsc4I	CCNNNNNNNGG	2 cut(s)	329, 870
Bse1I	ACTGG	3 cut(s)	115, 346, 824
Bse3DI	GCAATG	1 cut(s)	203
Bse8I	GATNNNNATC	1 cut(s)	854
BseBI	CCWGG	4 cut(s)	108, 313, 582, 662
BseCI	ATCGAT	1 cut(s)	858
BseDI	CCNNGG	5 cut(s)	311, 361, 480, 842, 921
BseGI	GGATG	4 cut(s)	187, 616, 828, 879
BseJI	GATNNNNATC	1 cut(s)	854
BseLI	CCNNNNNNNGG	2 cut(s)	329, 870
BseMI	GCAATG	1 cut(s)	203
BseMII	CTCAG	5 cut(s)	131, 147, 279, 795, 906
BseNI	ACTGG	3 cut(s)	115, 346, 824
BseSI	GKGCMC	1 cut(s)	472
BseXI	GCAGC	1 cut(s)	415
BshFI	GGCC	7 cut(s)	316, 421, 445, 502, 536, 580, 906
BshVI	ATCGAT	1 cut(s)	858
BsiHKAI	GWGCWC	4 cut(s)	472, 589, 619, 733
BslFI	GGGAC	1 cut(s)	824
BslI	CCNNNNNNNGG	2 cut(s)	329, 870
BsmAI	GTCTC	5 cut(s)	46, 123, 123, 154, 547
BsmFI	GGGAC	1 cut(s)	824
BsnI	GGCC	7 cut(s)	316, 421, 445, 502, 536, 580, 906
Bsp1286I	GDGCHC	5 cut(s)	378, 472, 589, 619, 733
Bsp143I	GATC	5 cut(s)	110, 256, 512, 719, 766
Bsp19I	CCATGG	1 cut(s)	921
BspANI	GGCC	7 cut(s)	316, 421, 445, 502, 536, 580, 906
BspCNI	CTCAG	5 cut(s)	132, 146, 278, 794, 905
BspDI	ATCGAT	1 cut(s)	858
BspLI	GGNNCC	2 cut(s)	112, 375
BspMI	ACCTGC	3 cut(s)	478, 481, 872
BspPI	GGATC	5 cut(s)	105, 118, 264, 727, 774
BspQI	GCTCTTC	1 cut(s)	25
BsrDI	GCAATG	1 cut(s)	203
BsrI	ACTGG	3 cut(s)	115, 346, 824
BssECI	CCNNGG	5 cut(s)	311, 361, 480, 842, 921
BssMI	GATC	5 cut(s)	110, 256, 512, 719, 766
BssT1I	CCWWGG	4 cut(s)	361, 480, 842, 921
Bst2UI	CCWGG	4 cut(s)	108, 313, 582, 662
Bst4CI	ACNGT	4 cut(s)	32, 217, 467, 541
Bst6I	CTCTTC	1 cut(s)	25
BstC8I	GCNNGC	1 cut(s)	758
BstDEI	CTNAG	6 cut(s)	92, 133, 140, 265, 781, 892
BstDSI	CCRYGG	1 cut(s)	921
BstENI	CCTNNNNNAGG	1 cut(s)	868
BstF5I	GGATG	4 cut(s)	187, 616, 828, 879
BstHHI	GCGC	1 cut(s)	487
BstKTI	GATC	5 cut(s)	113, 259, 515, 722, 769
BstMAI	GTCTC	5 cut(s)	46, 123, 123, 154, 547
BstMBI	GATC	5 cut(s)	110, 256, 512, 719, 766
BstMWI	GCNNNNNNNGC	3 cut(s)	418, 482, 917
BstNI	CCWGG	4 cut(s)	108, 313, 582, 662
BstNSI	RCATGY	1 cut(s)	301
BstSCI	CCNGG	4 cut(s)	106, 311, 580, 660
BstSFI	CTRYAG	1 cut(s)	705
BstSLI	GKGCMC	1 cut(s)	472
BstV1I	GCAGC	1 cut(s)	415
BstX2I	RGATCY	3 cut(s)	110, 719, 766
BstXI	CCANNNNNNTGG	1 cut(s)	53
BstYI	RGATCY	3 cut(s)	110, 719, 766
Bsu15I	ATCGAT	1 cut(s)	858
BsuRI	GGCC	7 cut(s)	316, 421, 445, 502, 536, 580, 906
BsuTUI	ATCGAT	1 cut(s)	858
BtgI	CCRYGG	1 cut(s)	921
BtsCI	GGATG	4 cut(s)	187, 616, 828, 879
BtsIMutI	CAGTG	2 cut(s)	472, 537
BveI	ACCTGC	3 cut(s)	478, 481, 872
Cac8I	GCNNGC	1 cut(s)	758
CaiI	CAGNNNCTG	1 cut(s)	581
CfoI	GCGC	1 cut(s)	487
Cfr13I	GGNCC	1 cut(s)	578
ClaI	ATCGAT	1 cut(s)	858
Csp6I	GTAC	2 cut(s)	350, 459
CspCI	CAANNNNNGTGG	4 cut(s)	142, 177, 534, 569
CviAII	CATG	7 cut(s)	47, 298, 425, 607, 725, 776, 922
CviQI	GTAC	2 cut(s)	350, 459
DdeI	CTNAG	6 cut(s)	92, 133, 140, 265, 781, 892
DpnI	GATC	5 cut(s)	112, 258, 514, 721, 768
DpnII	GATC	5 cut(s)	110, 256, 512, 719, 766
DraI	TTTAAA	1 cut(s)	195
EaeI	YGGCCR	2 cut(s)	500, 534
Eam1104I	CTCTTC	1 cut(s)	25
EarI	CTCTTC	1 cut(s)	25
Ecl136II	GAGCTC	1 cut(s)	731
Eco130I	CCWWGG	4 cut(s)	361, 480, 842, 921
Eco147I	AGGCCT	2 cut(s)	316, 421
Eco24I	GRGCYC	2 cut(s)	378, 733
Eco53kI	GAGCTC	1 cut(s)	731
Eco57I	CTGAAG	2 cut(s)	98, 782
EcoICRI	GAGCTC	1 cut(s)	731
EcoNI	CCTNNNNNAGG	1 cut(s)	868
EcoO109I	RGGNCCY	1 cut(s)	578
EcoRII	CCWGG	4 cut(s)	106, 311, 580, 660
EcoT14I	CCWWGG	4 cut(s)	361, 480, 842, 921
EcoT38I	GRGCYC	2 cut(s)	378, 733
ErhI	CCWWGG	4 cut(s)	361, 480, 842, 921
FaeI	CATG	7 cut(s)	50, 301, 428, 610, 728, 779, 925
FaqI	GGGAC	1 cut(s)	824
FatI	CATG	7 cut(s)	46, 297, 424, 606, 724, 775, 921
FblI	GTMKAC	2 cut(s)	27, 67
Fnu4HI	GCNGC	1 cut(s)	429
FokI	GGATG	4 cut(s)	174, 623, 835, 886
FriOI	GRGCYC	2 cut(s)	378, 733
Fsp4HI	GCNGC	1 cut(s)	429
FspBI	CTAG	4 cut(s)	146, 441, 456, 946
GlaI	GCGC	1 cut(s)	486
GluI	GCNGC	1 cut(s)	429
HaeIII	GGCC	7 cut(s)	316, 421, 445, 502, 536, 580, 906
HhaI	GCGC	1 cut(s)	487
Hin1II	CATG	7 cut(s)	50, 301, 428, 610, 728, 779, 925
Hin6I	GCGC	1 cut(s)	485
HinP1I	GCGC	1 cut(s)	485
HinfI	GANTC	3 cut(s)	131, 200, 367
HphI	GGTGA	4 cut(s)	300, 787, 827, 845
Hpy166II	GTNNAC	4 cut(s)	28, 68, 295, 470
Hpy188I	TCNGA	6 cut(s)	13, 136, 247, 268, 784, 895
Hpy188III	TCNNGA	3 cut(s)	122, 371, 680
Hpy8I	GTNNAC	4 cut(s)	28, 68, 295, 470
HpyAV	CCTTC	4 cut(s)	73, 327, 757, 782
HpyCH4III	ACNGT	4 cut(s)	32, 217, 467, 541
HpyCH4IV	ACGT	1 cut(s)	552
HpyCH4V	TGCA	6 cut(s)	208, 412, 470, 656, 867, 933
HpyF10VI	GCNNNNNNNGC	3 cut(s)	418, 482, 917
HpyF3I	CTNAG	6 cut(s)	92, 133, 140, 265, 781, 892
HpySE526I	ACGT	1 cut(s)	552
Hsp92II	CATG	7 cut(s)	50, 301, 428, 610, 728, 779, 925
HspAI	GCGC	1 cut(s)	485
Kzo9I	GATC	5 cut(s)	110, 256, 512, 719, 766
LguI	GCTCTTC	1 cut(s)	25
LmnI	GCTCC	4 cut(s)	373, 622, 728, 916
Lsp1109I	GCAGC	1 cut(s)	415
LweI	GCATC	3 cut(s)	238, 813, 886
MaeI	CTAG	4 cut(s)	146, 441, 456, 946
MaeII	ACGT	1 cut(s)	552
MaeIII	GTNAC	2 cut(s)	306, 815
MalI	GATC	5 cut(s)	112, 258, 514, 721, 768
MboI	GATC	5 cut(s)	110, 256, 512, 719, 766
MboII	GAAGA	3 cut(s)	12, 535, 663
MflI	RGATCY	3 cut(s)	110, 719, 766
MhlI	GDGCHC	5 cut(s)	378, 472, 589, 619, 733
MlsI	TGGCCA	2 cut(s)	502, 536
MluNI	TGGCCA	2 cut(s)	502, 536
MlyI	GAGTC	2 cut(s)	125, 376
Mox20I	TGGCCA	2 cut(s)	502, 536
MscI	TGGCCA	2 cut(s)	502, 536
MseI	TTAA	1 cut(s)	194
MslI	CAYNNNNRTG	1 cut(s)	51
Msp20I	TGGCCA	2 cut(s)	502, 536
MspR9I	CCNGG	4 cut(s)	108, 313, 582, 662
MvaI	CCWGG	4 cut(s)	108, 313, 582, 662
MwoI	GCNNNNNNNGC	3 cut(s)	418, 482, 917
NcoI	CCATGG	1 cut(s)	921
NdeII	GATC	5 cut(s)	110, 256, 512, 719, 766
NlaIII	CATG	7 cut(s)	50, 301, 428, 610, 728, 779, 925
NlaIV	GGNNCC	2 cut(s)	112, 375
NmuCI	GTSAC	2 cut(s)	306, 815
NspI	RCATGY	1 cut(s)	301
PaqCI	CACCTGC	1 cut(s)	481
PceI	AGGCCT	2 cut(s)	316, 421
PciI	ACATGT	1 cut(s)	297
PciSI	GCTCTTC	1 cut(s)	25
PfeI	GAWTC	1 cut(s)	200
PfoI	TCCNGGA	1 cut(s)	106
PkrI	GCNGC	1 cut(s)	430
PleI	GAGTC	2 cut(s)	125, 375
PpsI	GAGTC	2 cut(s)	125, 375
PscI	ACATGT	1 cut(s)	297
Psp124BI	GAGCTC	1 cut(s)	733
Psp6I	CCWGG	4 cut(s)	106, 311, 580, 660
PspGI	CCWGG	4 cut(s)	106, 311, 580, 660
PspN4I	GGNNCC	2 cut(s)	112, 375
PspPI	GGNCC	1 cut(s)	578
PstNI	CAGNNNCTG	1 cut(s)	581
PsuI	RGATCY	3 cut(s)	110, 719, 766
RsaI	GTAC	2 cut(s)	351, 460
RsaNI	GTAC	2 cut(s)	350, 459
RseI	CAYNNNNRTG	1 cut(s)	51
SacI	GAGCTC	1 cut(s)	733
SapI	GCTCTTC	1 cut(s)	25
SaqAI	TTAA	1 cut(s)	194
SatI	GCNGC	1 cut(s)	429
Sau3AI	GATC	5 cut(s)	110, 256, 512, 719, 766
Sau96I	GGNCC	1 cut(s)	578
ScaI	AGTACT	1 cut(s)	460
SchI	GAGTC	2 cut(s)	125, 376
ScrFI	CCNGG	4 cut(s)	108, 313, 582, 662
SduI	GDGCHC	5 cut(s)	378, 472, 589, 619, 733
SfaNI	GCATC	3 cut(s)	238, 813, 886
SfcI	CTRYAG	1 cut(s)	705
SmiMI	CAYNNNNRTG	1 cut(s)	51
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
SseBI	AGGCCT	2 cut(s)	316, 421
SspMI	CTAG	4 cut(s)	146, 441, 456, 946
SstI	GAGCTC	1 cut(s)	733
StuI	AGGCCT	2 cut(s)	316, 421
StyD4I	CCNGG	4 cut(s)	106, 311, 580, 660
StyI	CCWWGG	4 cut(s)	361, 480, 842, 921
TaaI	ACNGT	4 cut(s)	32, 217, 467, 541
TaiI	ACGT	1 cut(s)	555
TaqI	TCGA	1 cut(s)	858
TatI	WGTACW	2 cut(s)	349, 458
TfiI	GAWTC	1 cut(s)	200
Tru1I	TTAA	1 cut(s)	194
Tru9I	TTAA	1 cut(s)	194
TscAI	CASTG	2 cut(s)	472, 544
TseFI	GTSAC	2 cut(s)	306, 815
TseI	GCWGC	1 cut(s)	428
Tsp45I	GTSAC	2 cut(s)	306, 815
TspDTI	ATGAA	4 cut(s)	192, 398, 764, 899
TspGWI	ACGGA	1 cut(s)	101
TspRI	CASTG	2 cut(s)	472, 544
VneI	GTGCAC	1 cut(s)	468
XagI	CCTNNNNNAGG	1 cut(s)	868
XceI	RCATGY	1 cut(s)	301
XmiI	GTMKAC	2 cut(s)	27, 67
XspI	CTAG	4 cut(s)	146, 441, 456, 946
ZrmI	AGTACT	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.